data_3MIC # _model_server_result.job_id 28wqkXxy2SnhAbC4jCIO-Q _model_server_result.datetime_utc '2024-10-10 07:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":3}' # _entry.id 3MIC # _exptl.entry_id 3MIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MIC _cell.length_a 68.454 _cell.length_b 68.579 _cell.length_c 81.409 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 47 1_555 A SG CYS 144 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 39 A CYS 81 1_555 A SG CYS 84 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 72 A CYS 114 1_555 A SG CYS 89 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 185 A CYS 227 1_555 A SG CYS 292 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 251 A CYS 293 1_555 A SG CYS 273 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 G N1 AZI . A AZI 1 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc2 A ND1 HIS 65 A HIS 107 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 A ND1 HIS 66 A HIS 108 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 A O ASP 85 A ASP 127 1_555 E NA NA . A NA 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc5 A ND1 HIS 130 A HIS 172 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 A NE2 HIS 193 A HIS 235 1_555 D NI NI . A NI 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc7 A NE2 HIS 200 A HIS 242 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc8 A NE2 HIS 202 A HIS 244 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc9 A O GLY 266 A GLY 308 1_555 E NA NA . A NA 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc10 A SD MET 272 A MET 314 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc11 A O PHE 301 A PHE 343 1_555 F NA NA . A NA 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc12 D NI NI . A NI 359 1_555 L O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc13 D NI NI . A NI 359 1_555 L O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc14 D NI NI . A NI 359 1_555 L O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc15 D NI NI . A NI 359 1_555 L O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 131 n n C1 C2 GOL sing 132 n n C1 H11 GOL sing 133 n n C1 H12 GOL sing 134 n n O1 HO1 GOL sing 135 n n C2 O2 GOL sing 136 n n C2 C3 GOL sing 137 n n C2 H2 GOL sing 138 n n O2 HO2 GOL sing 139 n n C3 O3 GOL sing 140 n n C3 H31 GOL sing 141 n n C3 H32 GOL sing 142 n n O3 HO3 GOL sing 143 n n # _atom_sites.entry_id 3MIC _atom_sites.fract_transf_matrix[1][1] 0.014608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 357 357 CU CU . C 2 CU A 1 358 358 CU CU . D 3 NI A 1 359 359 NI NI . E 4 NA A 1 360 360 NA NA . F 4 NA A 1 361 361 NA NA . G 5 AZI A 1 1 1 AZI AZI . H 5 AZI A 1 2 2 AZI AZI . I 6 GOL A 1 362 1 GOL GOL . J 6 GOL A 1 363 2 GOL GOL . K 6 GOL A 1 3 3 GOL GOL . L 7 HOH A 1 5 5 HOH HOH . L 7 HOH A 2 6 6 HOH HOH . L 7 HOH A 3 8 8 HOH HOH . L 7 HOH A 4 9 9 HOH HOH . L 7 HOH A 5 10 10 HOH HOH . L 7 HOH A 6 12 12 HOH HOH . L 7 HOH A 7 13 13 HOH HOH . L 7 HOH A 8 14 14 HOH HOH . L 7 HOH A 9 16 16 HOH HOH . L 7 HOH A 10 17 17 HOH HOH . L 7 HOH A 11 18 18 HOH HOH . L 7 HOH A 12 19 19 HOH HOH . L 7 HOH A 13 20 20 HOH HOH . L 7 HOH A 14 21 21 HOH HOH . L 7 HOH A 15 22 22 HOH HOH . L 7 HOH A 16 23 23 HOH HOH . L 7 HOH A 17 24 24 HOH HOH . L 7 HOH A 18 25 25 HOH HOH . L 7 HOH A 19 26 26 HOH HOH . L 7 HOH A 20 27 27 HOH HOH . L 7 HOH A 21 28 28 HOH HOH . L 7 HOH A 22 29 29 HOH HOH . L 7 HOH A 23 30 30 HOH HOH . L 7 HOH A 24 31 31 HOH HOH . L 7 HOH A 25 33 33 HOH HOH . L 7 HOH A 26 34 34 HOH HOH . L 7 HOH A 27 35 35 HOH HOH . L 7 HOH A 28 36 36 HOH HOH . L 7 HOH A 29 37 37 HOH HOH . L 7 HOH A 30 38 38 HOH HOH . L 7 HOH A 31 39 39 HOH HOH . L 7 HOH A 32 40 40 HOH HOH . L 7 HOH A 33 41 41 HOH HOH . L 7 HOH A 34 42 42 HOH HOH . L 7 HOH A 35 364 1 HOH HOH . L 7 HOH A 36 365 2 HOH HOH . L 7 HOH A 37 366 3 HOH HOH . L 7 HOH A 38 367 43 HOH HOH . L 7 HOH A 39 368 44 HOH HOH . L 7 HOH A 40 369 45 HOH HOH . L 7 HOH A 41 370 46 HOH HOH . L 7 HOH A 42 371 47 HOH HOH . L 7 HOH A 43 372 48 HOH HOH . L 7 HOH A 44 373 49 HOH HOH . L 7 HOH A 45 374 50 HOH HOH . L 7 HOH A 46 375 51 HOH HOH . L 7 HOH A 47 376 52 HOH HOH . L 7 HOH A 48 377 54 HOH HOH . L 7 HOH A 49 378 56 HOH HOH . L 7 HOH A 50 379 57 HOH HOH . L 7 HOH A 51 380 59 HOH HOH . L 7 HOH A 52 381 60 HOH HOH . L 7 HOH A 53 382 61 HOH HOH . L 7 HOH A 54 383 62 HOH HOH . L 7 HOH A 55 384 64 HOH HOH . L 7 HOH A 56 385 66 HOH HOH . L 7 HOH A 57 386 67 HOH HOH . L 7 HOH A 58 387 68 HOH HOH . L 7 HOH A 59 388 69 HOH HOH . L 7 HOH A 60 389 72 HOH HOH . L 7 HOH A 61 390 73 HOH HOH . L 7 HOH A 62 391 75 HOH HOH . L 7 HOH A 63 392 77 HOH HOH . L 7 HOH A 64 393 78 HOH HOH . L 7 HOH A 65 394 79 HOH HOH . L 7 HOH A 66 395 80 HOH HOH . L 7 HOH A 67 396 81 HOH HOH . L 7 HOH A 68 397 82 HOH HOH . L 7 HOH A 69 398 83 HOH HOH . L 7 HOH A 70 399 84 HOH HOH . L 7 HOH A 71 400 85 HOH HOH . L 7 HOH A 72 401 86 HOH HOH . L 7 HOH A 73 402 87 HOH HOH . L 7 HOH A 74 403 88 HOH HOH . L 7 HOH A 75 404 89 HOH HOH . L 7 HOH A 76 405 90 HOH HOH . L 7 HOH A 77 406 91 HOH HOH . L 7 HOH A 78 407 92 HOH HOH . L 7 HOH A 79 408 93 HOH HOH . L 7 HOH A 80 409 94 HOH HOH . L 7 HOH A 81 410 95 HOH HOH . L 7 HOH A 82 411 96 HOH HOH . L 7 HOH A 83 412 97 HOH HOH . L 7 HOH A 84 413 98 HOH HOH . L 7 HOH A 85 414 99 HOH HOH . L 7 HOH A 86 415 101 HOH HOH . L 7 HOH A 87 416 103 HOH HOH . L 7 HOH A 88 417 104 HOH HOH . L 7 HOH A 89 418 106 HOH HOH . L 7 HOH A 90 419 107 HOH HOH . L 7 HOH A 91 420 108 HOH HOH . L 7 HOH A 92 421 109 HOH HOH . L 7 HOH A 93 422 111 HOH HOH . L 7 HOH A 94 423 112 HOH HOH . L 7 HOH A 95 424 113 HOH HOH . L 7 HOH A 96 425 114 HOH HOH . L 7 HOH A 97 426 115 HOH HOH . L 7 HOH A 98 427 117 HOH HOH . L 7 HOH A 99 428 118 HOH HOH . L 7 HOH A 100 429 119 HOH HOH . L 7 HOH A 101 430 120 HOH HOH . L 7 HOH A 102 431 122 HOH HOH . L 7 HOH A 103 432 123 HOH HOH . L 7 HOH A 104 433 124 HOH HOH . L 7 HOH A 105 434 125 HOH HOH . L 7 HOH A 106 435 126 HOH HOH . L 7 HOH A 107 436 127 HOH HOH . L 7 HOH A 108 437 128 HOH HOH . L 7 HOH A 109 438 129 HOH HOH . L 7 HOH A 110 439 130 HOH HOH . L 7 HOH A 111 440 131 HOH HOH . L 7 HOH A 112 441 132 HOH HOH . L 7 HOH A 113 442 133 HOH HOH . L 7 HOH A 114 443 134 HOH HOH . L 7 HOH A 115 444 135 HOH HOH . L 7 HOH A 116 445 136 HOH HOH . L 7 HOH A 117 446 137 HOH HOH . L 7 HOH A 118 447 138 HOH HOH . L 7 HOH A 119 448 139 HOH HOH . L 7 HOH A 120 449 140 HOH HOH . L 7 HOH A 121 450 141 HOH HOH . L 7 HOH A 122 451 142 HOH HOH . L 7 HOH A 123 452 143 HOH HOH . L 7 HOH A 124 453 144 HOH HOH . L 7 HOH A 125 454 145 HOH HOH . L 7 HOH A 126 455 146 HOH HOH . L 7 HOH A 127 456 149 HOH HOH . L 7 HOH A 128 457 151 HOH HOH . L 7 HOH A 129 458 152 HOH HOH . L 7 HOH A 130 459 153 HOH HOH . L 7 HOH A 131 460 154 HOH HOH . L 7 HOH A 132 461 156 HOH HOH . L 7 HOH A 133 462 157 HOH HOH . L 7 HOH A 134 463 158 HOH HOH . L 7 HOH A 135 464 159 HOH HOH . L 7 HOH A 136 465 160 HOH HOH . L 7 HOH A 137 466 161 HOH HOH . L 7 HOH A 138 467 162 HOH HOH . L 7 HOH A 139 468 163 HOH HOH . L 7 HOH A 140 469 164 HOH HOH . L 7 HOH A 141 470 165 HOH HOH . L 7 HOH A 142 471 166 HOH HOH . L 7 HOH A 143 472 167 HOH HOH . L 7 HOH A 144 473 168 HOH HOH . L 7 HOH A 145 474 169 HOH HOH . L 7 HOH A 146 475 170 HOH HOH . L 7 HOH A 147 476 172 HOH HOH . L 7 HOH A 148 477 174 HOH HOH . L 7 HOH A 149 478 175 HOH HOH . L 7 HOH A 150 479 176 HOH HOH . L 7 HOH A 151 480 177 HOH HOH . L 7 HOH A 152 481 179 HOH HOH . L 7 HOH A 153 482 180 HOH HOH . L 7 HOH A 154 483 181 HOH HOH . L 7 HOH A 155 484 182 HOH HOH . L 7 HOH A 156 485 183 HOH HOH . L 7 HOH A 157 486 184 HOH HOH . L 7 HOH A 158 487 185 HOH HOH . L 7 HOH A 159 488 186 HOH HOH . L 7 HOH A 160 489 187 HOH HOH . L 7 HOH A 161 490 188 HOH HOH . L 7 HOH A 162 491 189 HOH HOH . L 7 HOH A 163 492 190 HOH HOH . L 7 HOH A 164 493 191 HOH HOH . L 7 HOH A 165 494 192 HOH HOH . L 7 HOH A 166 495 193 HOH HOH . L 7 HOH A 167 496 194 HOH HOH . L 7 HOH A 168 497 195 HOH HOH . L 7 HOH A 169 498 196 HOH HOH . L 7 HOH A 170 499 197 HOH HOH . L 7 HOH A 171 500 198 HOH HOH . L 7 HOH A 172 501 200 HOH HOH . L 7 HOH A 173 502 201 HOH HOH . L 7 HOH A 174 503 202 HOH HOH . L 7 HOH A 175 504 203 HOH HOH . L 7 HOH A 176 505 204 HOH HOH . L 7 HOH A 177 506 206 HOH HOH . L 7 HOH A 178 507 207 HOH HOH . L 7 HOH A 179 508 209 HOH HOH . L 7 HOH A 180 509 211 HOH HOH . L 7 HOH A 181 510 213 HOH HOH . L 7 HOH A 182 511 216 HOH HOH . L 7 HOH A 183 512 217 HOH HOH . L 7 HOH A 184 513 218 HOH HOH . L 7 HOH A 185 514 219 HOH HOH . L 7 HOH A 186 515 221 HOH HOH . L 7 HOH A 187 516 223 HOH HOH . L 7 HOH A 188 517 225 HOH HOH . L 7 HOH A 189 518 226 HOH HOH . L 7 HOH A 190 519 227 HOH HOH . L 7 HOH A 191 520 228 HOH HOH . L 7 HOH A 192 521 229 HOH HOH . L 7 HOH A 193 522 231 HOH HOH . L 7 HOH A 194 523 232 HOH HOH . L 7 HOH A 195 524 233 HOH HOH . L 7 HOH A 196 525 235 HOH HOH . L 7 HOH A 197 526 237 HOH HOH . L 7 HOH A 198 527 239 HOH HOH . L 7 HOH A 199 528 241 HOH HOH . L 7 HOH A 200 529 234 HOH HOH . L 7 HOH A 201 530 236 HOH HOH . L 7 HOH A 202 531 230 HOH HOH . L 7 HOH A 203 532 242 HOH HOH . L 7 HOH A 204 533 243 HOH HOH . L 7 HOH A 205 534 244 HOH HOH . L 7 HOH A 206 535 245 HOH HOH . L 7 HOH A 207 536 246 HOH HOH . L 7 HOH A 208 537 247 HOH HOH . L 7 HOH A 209 538 248 HOH HOH . L 7 HOH A 210 539 249 HOH HOH . L 7 HOH A 211 540 250 HOH HOH . L 7 HOH A 212 541 251 HOH HOH . L 7 HOH A 213 542 252 HOH HOH . L 7 HOH A 214 543 253 HOH HOH . L 7 HOH A 215 544 254 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 6 27.164 9.386 32.251 1 50.81 ? C1 GOL 3 A 1 HETATM 2 O O1 GOL . . . K 6 26.471 9.986 33.324 1 52.05 ? O1 GOL 3 A 1 HETATM 3 C C2 GOL . . . K 6 28.619 9.176 32.648 1 50.33 ? C2 GOL 3 A 1 HETATM 4 O O2 GOL . . . K 6 28.707 8.51 33.889 1 50.25 ? O2 GOL 3 A 1 HETATM 5 C C3 GOL . . . K 6 29.426 8.439 31.583 1 50.2 ? C3 GOL 3 A 1 HETATM 6 O O3 GOL . . . K 6 28.613 7.609 30.783 1 50.48 ? O3 GOL 3 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #