data_3MID # _model_server_result.job_id lXsq6QCt4JH2-Goinn_xpw _model_server_result.datetime_utc '2025-01-11 13:09:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":4}' # _entry.id 3MID # _exptl.entry_id 3MID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 42.02 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AZIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MID _cell.length_a 68.882 _cell.length_b 69.258 _cell.length_c 81.494 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MID _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 47 1_555 A SG CYS 144 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 39 A CYS 81 1_555 A SG CYS 84 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 72 A CYS 114 1_555 A SG CYS 89 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 185 A CYS 227 1_555 A SG CYS 292 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 251 A CYS 293 1_555 A SG CYS 273 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 E N1 AZI . A AZI 2 1_555 D NI NI . A NI 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc2 E N2 AZI . A AZI 2 1_555 D NI NI . A NI 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 F N3 AZI . A AZI 3 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc4 K O HOH . A HOH 6 1_555 D NI NI . A NI 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc5 K O HOH . A HOH 8 1_555 D NI NI . A NI 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc6 A ND1 HIS 65 A HIS 107 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc7 A ND1 HIS 66 A HIS 108 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc8 A ND1 HIS 130 A HIS 172 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc9 A NE2 HIS 193 A HIS 235 1_555 D NI NI . A NI 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 A NE2 HIS 200 A HIS 242 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc11 A NE2 HIS 202 A HIS 244 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc12 A SD MET 272 A MET 314 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? # _chem_comp.formula 'N3 -1' _chem_comp.formula_weight 42.02 _chem_comp.id AZI _chem_comp.mon_nstd_flag . _chem_comp.name 'AZIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 N2 AZI doub 70 n n N2 N3 AZI doub 71 n n # _atom_sites.entry_id 3MID _atom_sites.fract_transf_matrix[1][1] 0.014518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 357 357 CU CU . C 2 CU A 1 358 358 CU CU . D 3 NI A 1 359 359 NI NI . E 4 AZI A 1 2 2 AZI AZI . F 4 AZI A 1 3 3 AZI AZI . G 4 AZI A 1 4 4 AZI AZI . H 5 GOL A 1 1 1 GOL GOL . I 5 GOL A 1 360 2 GOL GOL . J 5 GOL A 1 361 3 GOL GOL . K 6 HOH A 1 5 5 HOH HOH . K 6 HOH A 2 6 6 HOH HOH . K 6 HOH A 3 8 8 HOH HOH . K 6 HOH A 4 9 9 HOH HOH . K 6 HOH A 5 10 10 HOH HOH . K 6 HOH A 6 11 11 HOH HOH . K 6 HOH A 7 12 12 HOH HOH . K 6 HOH A 8 13 13 HOH HOH . K 6 HOH A 9 14 14 HOH HOH . K 6 HOH A 10 15 15 HOH HOH . K 6 HOH A 11 16 16 HOH HOH . K 6 HOH A 12 17 17 HOH HOH . K 6 HOH A 13 362 1 HOH HOH . K 6 HOH A 14 363 2 HOH HOH . K 6 HOH A 15 364 3 HOH HOH . K 6 HOH A 16 365 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AZI . . . G 4 52.392 17.192 19.542 1 80.61 ? N1 AZI 4 A 1 HETATM 2 N N2 AZI . . . G 4 52.334 16.92 20.67 1 80.38 ? N2 AZI 4 A 1 HETATM 3 N N3 AZI . . . G 4 52.273 16.652 21.799 1 79.79 ? N3 AZI 4 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #