data_3MIJ # _model_server_result.job_id q-9BKs82E-1y1kqRwXKR9g _model_server_result.datetime_utc '2024-11-21 17:06:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":30}' # _entry.id 3MIJ # _exptl.entry_id 3MIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.906 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide]" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MIJ _cell.length_a 56.606 _cell.length_b 56.606 _cell.length_c 56.606 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -56.606 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 G 3 A G 3 1_555 C K K . A K 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 A O6 G 4 A G 4 1_555 B K K . A K 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc3 A O6 G 4 A G 4 1_555 C K K . A K 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.334 ? metalc ? metalc4 A O6 G 5 A G 5 1_555 B K K . A K 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc5 A O6 G 9 A G 9 1_555 C K K . A K 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc6 A O6 G 10 A G 10 1_555 B K K . A K 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc7 A O6 G 10 A G 10 1_555 C K K . A K 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc8 A O6 G 11 A G 11 1_555 B K K . A K 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? hydrog TYPE_6_PAIR hydrog1 A N1 G 3 A G 3 1_555 A O6 G 9 A G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 G 3 A G 3 1_555 A N7 G 9 A G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N1 G 4 A G 4 1_555 A O6 G 10 A G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A N2 G 4 A G 4 1_555 A N7 G 10 A G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 G 5 A G 5 1_555 A O6 G 11 A G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 G 5 A G 5 1_555 A N7 G 11 A G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C43 H47 N11 O2' _chem_comp.formula_weight 749.906 _chem_comp.id R14 _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide]" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'triazole-acridine conjugate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAX CAA R14 sing 82 n n CAA HAA R14 sing 83 n n CAA HAAA R14 sing 84 n n CAA HAAB R14 sing 85 n n CAY CAB R14 sing 86 n n CAB HAB R14 sing 87 n n CAB HABA R14 sing 88 n n CAB HABB R14 sing 89 n n CAC CAZ R14 sing 90 n n CAC HAC R14 sing 91 n n CAC HACA R14 sing 92 n n CAC HACB R14 sing 93 n n CAD CBA R14 sing 94 n n CAD HAD R14 sing 95 n n CAD HADA R14 sing 96 n n CAD HADB R14 sing 97 n n OAE CBM R14 doub 98 n n CBN OAF R14 doub 99 n n CAK CAG R14 doub 100 n y CAG CAI R14 sing 101 n y CAG HAG R14 sing 102 n n CAJ CAH R14 doub 103 n y CAH CAL R14 sing 104 n y CAH HAH R14 sing 105 n n CAI CBO R14 doub 106 n y CAI HAI R14 sing 107 n n CBP CAJ R14 sing 108 n y CAJ HAJ R14 sing 109 n n CAK CBQ R14 sing 110 n y CAK HAK R14 sing 111 n n CBR CAL R14 doub 112 n y CAL HAL R14 sing 113 n n CAO CAM R14 doub 114 n y CAM CBS R14 sing 115 n y CAM HAM R14 sing 116 n n CAN CBT R14 doub 117 n y CAN CAP R14 sing 118 n y CAN HAN R14 sing 119 n n CBW CAO R14 sing 120 n y CAO HAO R14 sing 121 n n CAP CBX R14 doub 122 n y CAP HAP R14 sing 123 n n CBQ CAQ R14 doub 124 n y CAQ CBO R14 sing 125 n y CAQ HAQ R14 sing 126 n n CBP CAR R14 doub 127 n y CAR CBR R14 sing 128 n y CAR HAR R14 sing 129 n n CBY CAS R14 sing 130 n y CAS CBS R14 doub 131 n y CAS HAS R14 sing 132 n n CBT CAT R14 sing 133 n y CAT CBZ R14 doub 134 n y CAT HAT R14 sing 135 n n CBX CAU R14 sing 136 n y CAU CBW R14 doub 137 n y CAU HAU R14 sing 138 n n NCC CAV R14 sing 139 n y CAV CBU R14 doub 140 n y CAV HAV R14 sing 141 n n CBV CAW R14 doub 142 n y NCD CAW R14 sing 143 n y CAW HAW R14 sing 144 n n NCA CAX R14 sing 145 n n CAX HAX R14 sing 146 n n CAX HAXA R14 sing 147 n n CAY NCA R14 sing 148 n n CAY HAY R14 sing 149 n n CAY HAYA R14 sing 150 n n CAZ NCB R14 sing 151 n n CAZ HAZ R14 sing 152 n n CAZ HAZA R14 sing 153 n n NCB CBA R14 sing 154 n n CBA HBA R14 sing 155 n n CBA HBAA R14 sing 156 n n CBM CBB R14 sing 157 n n CBB CBD R14 sing 158 n n CBB HBB R14 sing 159 n n CBB HBBA R14 sing 160 n n CBE CBC R14 sing 161 n n CBC CBN R14 sing 162 n n CBC HBC R14 sing 163 n n CBC HBCA R14 sing 164 n n CBD NCA R14 sing 165 n n CBD HBD R14 sing 166 n n CBD HBDA R14 sing 167 n n NCB CBE R14 sing 168 n n CBE HBE R14 sing 169 n n CBE HBEA R14 sing 170 n n NBH NBF R14 doub 171 n y CBU NBF R14 sing 172 n y NBG NBI R14 doub 173 n y NBG CBV R14 sing 174 n y NCC NBH R14 sing 175 n y NBI NCD R14 sing 176 n y CBZ NBJ R14 sing 177 n y NBJ CBY R14 doub 178 n y CBO NBK R14 sing 179 n n NBK CBM R14 sing 180 n n NBK HNBK R14 sing 181 n n CBN NBL R14 sing 182 n n NBL CBP R14 sing 183 n n NBL HNBL R14 sing 184 n n CBU CBQ R14 sing 185 n y CBR CBV R14 sing 186 n y CBS NCC R14 sing 187 n y NCD CBT R14 sing 188 n y CBW CBY R14 sing 189 n y CBX CBZ R14 sing 190 n y # _atom_sites.entry_id 3MIJ _atom_sites.fract_transf_matrix[1][1] 0.017666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 21 21 K K . C 2 K A 1 22 22 K K . D 3 R14 A 1 30 30 R14 R14 . E 4 HOH A 1 41 41 HOH HOH . E 4 HOH A 2 42 42 HOH HOH . E 4 HOH A 3 43 43 HOH HOH . E 4 HOH A 4 44 44 HOH HOH . E 4 HOH A 5 45 45 HOH HOH . E 4 HOH A 6 46 46 HOH HOH . E 4 HOH A 7 47 47 HOH HOH . E 4 HOH A 8 48 48 HOH HOH . E 4 HOH A 9 49 49 HOH HOH . E 4 HOH A 10 50 50 HOH HOH . E 4 HOH A 11 51 51 HOH HOH . E 4 HOH A 12 52 52 HOH HOH . E 4 HOH A 13 53 53 HOH HOH . E 4 HOH A 14 54 54 HOH HOH . E 4 HOH A 15 55 55 HOH HOH . E 4 HOH A 16 56 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA R14 . . . D 3 26.351 -24.584 13.891 1 57.77 ? CAA R14 30 A 1 HETATM 2 C CAB R14 . . . D 3 27.871 -20.382 13.393 1 55.11 ? CAB R14 30 A 1 HETATM 3 C CAC R14 . . . D 3 31.048 -16.128 -17.788 1 72.78 ? CAC R14 30 A 1 HETATM 4 C CAD R14 . . . D 3 30.826 -12.375 -15.954 1 72.59 ? CAD R14 30 A 1 HETATM 5 O OAE R14 . . . D 3 25.691 -21.513 8.887 1 48.85 ? OAE R14 30 A 1 HETATM 6 O OAF R14 . . . D 3 29.242 -14.849 -12.169 1 67.59 ? OAF R14 30 A 1 HETATM 7 C CAG R14 . . . D 3 26.21 -20.972 5.098 1 38.34 ? CAG R14 30 A 1 HETATM 8 C CAH R14 . . . D 3 27.387 -16.132 -8.837 1 58.91 ? CAH R14 30 A 1 HETATM 9 C CAI R14 . . . D 3 26.354 -21.45 6.4 1 39.35 ? CAI R14 30 A 1 HETATM 10 C CAJ R14 . . . D 3 27.87 -15.987 -10.147 1 60.11 ? CAJ R14 30 A 1 HETATM 11 C CAK R14 . . . D 3 26.253 -21.858 4.025 1 36.97 ? CAK R14 30 A 1 HETATM 12 C CAL R14 . . . D 3 27.167 -17.412 -8.303 1 57.68 ? CAL R14 30 A 1 HETATM 13 C CAM R14 . . . D 3 26.422 -26.513 -0.475 1 27.48 ? CAM R14 30 A 1 HETATM 14 C CAN R14 . . . D 3 26.791 -23.928 -7.157 1 40.18 ? CAN R14 30 A 1 HETATM 15 C CAO R14 . . . D 3 26.428 -26.749 -1.841 1 28.98 ? CAO R14 30 A 1 HETATM 16 C CAP R14 . . . D 3 26.679 -25.009 -6.305 1 38.04 ? CAP R14 30 A 1 HETATM 17 C CAQ R14 . . . D 3 26.576 -23.695 5.556 1 38.5 ? CAQ R14 30 A 1 HETATM 18 C CAR R14 . . . D 3 27.916 -18.382 -10.382 1 59.04 ? CAR R14 30 A 1 HETATM 19 C CAS R14 . . . D 3 26.63 -24.152 -0.879 1 30.31 ? CAS R14 30 A 1 HETATM 20 C CAT R14 . . . D 3 26.882 -22.427 -5.281 1 39.18 ? CAT R14 30 A 1 HETATM 21 C CAU R14 . . . D 3 26.554 -25.906 -4.086 1 33.42 ? CAU R14 30 A 1 HETATM 22 C CAV R14 . . . D 3 26.422 -23.815 1.923 1 29.89 ? CAV R14 30 A 1 HETATM 23 C CAW R14 . . . D 3 27.232 -20.328 -7.377 1 51.37 ? CAW R14 30 A 1 HETATM 24 C CAX R14 . . . D 3 27.293 -23.836 12.921 1 57.62 ? CAX R14 30 A 1 HETATM 25 C CAY R14 . . . D 3 27.906 -21.533 12.385 1 55.66 ? CAY R14 30 A 1 HETATM 26 C CAZ R14 . . . D 3 31.938 -15.675 -16.618 1 72.68 ? CAZ R14 30 A 1 HETATM 27 C CBA R14 . . . D 3 31.813 -13.49 -15.575 1 72.91 ? CBA R14 30 A 1 HETATM 28 C CBB R14 . . . D 3 26.471 -23.303 10.296 1 50.3 ? CBB R14 30 A 1 HETATM 29 C CBC R14 . . . D 3 29.699 -16.132 -14.17 1 68.54 ? CBC R14 30 A 1 HETATM 30 C CBD R14 . . . D 3 25.867 -22.48 11.457 1 53.45 ? CBD R14 30 A 1 HETATM 31 C CBE R14 . . . D 3 31.076 -15.456 -14.359 1 70.96 ? CBE R14 30 A 1 HETATM 32 N NBF R14 . . . D 3 26.65 -25.414 3.28 1 31.59 ? NBF R14 30 A 1 HETATM 33 N NBG R14 . . . D 3 27.002 -20.872 -9.419 1 53.86 ? NBG R14 30 A 1 HETATM 34 N NBH R14 . . . D 3 26.661 -25.883 2.132 1 30.26 ? NBH R14 30 A 1 HETATM 35 N NBI R14 . . . D 3 26.873 -21.893 -8.743 1 52.14 ? NBI R14 30 A 1 HETATM 36 N NBJ R14 . . . D 3 26.752 -23.338 -3.089 1 33.51 ? NBJ R14 30 A 1 HETATM 37 N NBK R14 . . . D 3 26.683 -23.284 7.884 1 45.16 ? NBK R14 30 A 1 HETATM 38 N NBL R14 . . . D 3 28.617 -17.05 -12.192 1 64.33 ? NBL R14 30 A 1 HETATM 39 C CBM R14 . . . D 3 26.238 -22.612 8.947 1 48.3 ? CBM R14 30 A 1 HETATM 40 C CBN R14 . . . D 3 29.168 -15.946 -12.732 1 66.97 ? CBN R14 30 A 1 HETATM 41 C CBO R14 . . . D 3 26.538 -22.81 6.634 1 41.12 ? CBO R14 30 A 1 HETATM 42 C CBP R14 . . . D 3 28.138 -17.124 -10.925 1 61.16 ? CBP R14 30 A 1 HETATM 43 C CBQ R14 . . . D 3 26.43 -23.221 4.258 1 35.28 ? CBQ R14 30 A 1 HETATM 44 C CBR R14 . . . D 3 27.441 -18.539 -9.08 1 56.51 ? CBR R14 30 A 1 HETATM 45 C CBS R14 . . . D 3 26.516 -25.214 0.003 1 28.59 ? CBS R14 30 A 1 HETATM 46 C CBT R14 . . . D 3 26.892 -22.637 -6.656 1 42.73 ? CBT R14 30 A 1 HETATM 47 C CBU R14 . . . D 3 26.488 -24.104 3.199 1 32.27 ? CBU R14 30 A 1 HETATM 48 C CBV R14 . . . D 3 27.23 -19.843 -8.62 1 54.1 ? CBV R14 30 A 1 HETATM 49 C CBW R14 . . . D 3 26.541 -25.684 -2.723 1 31.43 ? CBW R14 30 A 1 HETATM 50 C CBX R14 . . . D 3 26.661 -24.813 -4.937 1 35.68 ? CBX R14 30 A 1 HETATM 51 C CBY R14 . . . D 3 26.642 -24.381 -2.242 1 31.94 ? CBY R14 30 A 1 HETATM 52 C CBZ R14 . . . D 3 26.762 -23.525 -4.418 1 35.67 ? CBZ R14 30 A 1 HETATM 53 N NCA R14 . . . D 3 26.776 -22.464 12.631 1 55.86 ? NCA R14 30 A 1 HETATM 54 N NCB R14 . . . D 3 31.156 -14.815 -15.696 1 72.68 ? NCB R14 30 A 1 HETATM 55 N NCC R14 . . . D 3 26.52 -24.978 1.304 1 28.98 ? NCC R14 30 A 1 HETATM 56 N NCD R14 . . . D 3 26.996 -21.639 -7.539 1 48.54 ? NCD R14 30 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #