data_3MJ6 # _model_server_result.job_id P6A7sAID8OJvwEBA_VlMTw _model_server_result.datetime_utc '2025-07-06 06:39:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 3MJ6 # _exptl.entry_id 3MJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MJ6 _cell.length_a 61.946 _cell.length_b 61.946 _cell.length_c 82.477 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 501 NAG 2 n B FUC 2 B 2 FUC A 502 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 25 1_555 A SG CYS 101 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 140 A CYS 138 1_555 A SG CYS 218 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? covale ? covale1 A ND2 ASN 61 A ASN 59 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale2 A ND2 ASN 71 A ASN 69 1_555 D C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 107 A ASN 105 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? metalc ? metalc1 A O VAL 37 A VAL 35 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 A OH TYR 58 A TYR 56 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A OD1 ASN 61 A ASN 59 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 E NA NA . A NA 503 1_555 N O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc5 E NA NA . A NA 503 1_555 N O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc6 E NA NA . A NA 503 1_555 N O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 264 n n C1 O1 NAG sing 265 n n C1 O5 NAG sing 266 n n C1 H1 NAG sing 267 n n C2 C3 NAG sing 268 n n C2 N2 NAG sing 269 n n C2 H2 NAG sing 270 n n C3 C4 NAG sing 271 n n C3 O3 NAG sing 272 n n C3 H3 NAG sing 273 n n C4 C5 NAG sing 274 n n C4 O4 NAG sing 275 n n C4 H4 NAG sing 276 n n C5 C6 NAG sing 277 n n C5 O5 NAG sing 278 n n C5 H5 NAG sing 279 n n C6 O6 NAG sing 280 n n C6 H61 NAG sing 281 n n C6 H62 NAG sing 282 n n C7 C8 NAG sing 283 n n C7 N2 NAG sing 284 n n C7 O7 NAG doub 285 n n C8 H81 NAG sing 286 n n C8 H82 NAG sing 287 n n C8 H83 NAG sing 288 n n N2 HN2 NAG sing 289 n n O1 HO1 NAG sing 290 n n O3 HO3 NAG sing 291 n n O4 HO4 NAG sing 292 n n O6 HO6 NAG sing 293 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3MJ6 _atom_sites.fract_transf_matrix[1][1] 0.016143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 301 NAG NAG . D 3 NAG A 1 401 401 NAG NAG . E 4 NA A 1 503 503 NA NA . F 5 FMT A 1 601 601 FMT FMT . G 5 FMT A 1 602 602 FMT FMT . H 5 FMT A 1 603 603 FMT FMT . I 5 FMT A 1 604 604 FMT FMT . J 5 FMT A 1 605 605 FMT FMT . K 5 FMT A 1 606 606 FMT FMT . L 5 FMT A 1 607 607 FMT FMT . M 5 FMT A 1 608 608 FMT FMT . N 6 HOH A 1 609 609 HOH HOH . N 6 HOH A 2 610 610 HOH HOH . N 6 HOH A 3 611 611 HOH HOH . N 6 HOH A 4 612 612 HOH HOH . N 6 HOH A 5 613 613 HOH HOH . N 6 HOH A 6 614 614 HOH HOH . N 6 HOH A 7 615 615 HOH HOH . N 6 HOH A 8 616 616 HOH HOH . N 6 HOH A 9 617 617 HOH HOH . N 6 HOH A 10 618 618 HOH HOH . N 6 HOH A 11 619 619 HOH HOH . N 6 HOH A 12 620 620 HOH HOH . N 6 HOH A 13 621 621 HOH HOH . N 6 HOH A 14 622 622 HOH HOH . N 6 HOH A 15 623 623 HOH HOH . N 6 HOH A 16 624 624 HOH HOH . N 6 HOH A 17 625 625 HOH HOH . N 6 HOH A 18 626 626 HOH HOH . N 6 HOH A 19 627 627 HOH HOH . N 6 HOH A 20 628 628 HOH HOH . N 6 HOH A 21 629 629 HOH HOH . N 6 HOH A 22 630 630 HOH HOH . N 6 HOH A 23 631 631 HOH HOH . N 6 HOH A 24 632 632 HOH HOH . N 6 HOH A 25 633 633 HOH HOH . N 6 HOH A 26 634 634 HOH HOH . N 6 HOH A 27 635 635 HOH HOH . N 6 HOH A 28 636 636 HOH HOH . N 6 HOH A 29 637 637 HOH HOH . N 6 HOH A 30 638 638 HOH HOH . N 6 HOH A 31 639 639 HOH HOH . N 6 HOH A 32 640 640 HOH HOH . N 6 HOH A 33 641 641 HOH HOH . N 6 HOH A 34 642 642 HOH HOH . N 6 HOH A 35 643 643 HOH HOH . N 6 HOH A 36 644 644 HOH HOH . N 6 HOH A 37 645 645 HOH HOH . N 6 HOH A 38 646 646 HOH HOH . N 6 HOH A 39 647 647 HOH HOH . N 6 HOH A 40 648 648 HOH HOH . N 6 HOH A 41 649 649 HOH HOH . N 6 HOH A 42 650 650 HOH HOH . N 6 HOH A 43 651 651 HOH HOH . N 6 HOH A 44 652 652 HOH HOH . N 6 HOH A 45 653 653 HOH HOH . N 6 HOH A 46 654 654 HOH HOH . N 6 HOH A 47 655 655 HOH HOH . N 6 HOH A 48 656 656 HOH HOH . N 6 HOH A 49 657 657 HOH HOH . N 6 HOH A 50 658 658 HOH HOH . N 6 HOH A 51 659 659 HOH HOH . N 6 HOH A 52 660 660 HOH HOH . N 6 HOH A 53 661 661 HOH HOH . N 6 HOH A 54 662 662 HOH HOH . N 6 HOH A 55 663 663 HOH HOH . N 6 HOH A 56 664 664 HOH HOH . N 6 HOH A 57 665 665 HOH HOH . N 6 HOH A 58 666 666 HOH HOH . N 6 HOH A 59 667 667 HOH HOH . N 6 HOH A 60 668 668 HOH HOH . N 6 HOH A 61 669 669 HOH HOH . N 6 HOH A 62 670 670 HOH HOH . N 6 HOH A 63 671 671 HOH HOH . N 6 HOH A 64 672 672 HOH HOH . N 6 HOH A 65 673 673 HOH HOH . N 6 HOH A 66 674 674 HOH HOH . N 6 HOH A 67 675 675 HOH HOH . N 6 HOH A 68 676 676 HOH HOH . N 6 HOH A 69 677 677 HOH HOH . N 6 HOH A 70 678 678 HOH HOH . N 6 HOH A 71 679 679 HOH HOH . N 6 HOH A 72 680 680 HOH HOH . N 6 HOH A 73 681 681 HOH HOH . N 6 HOH A 74 682 682 HOH HOH . N 6 HOH A 75 683 683 HOH HOH . N 6 HOH A 76 684 684 HOH HOH . N 6 HOH A 77 685 685 HOH HOH . N 6 HOH A 78 686 686 HOH HOH . N 6 HOH A 79 687 687 HOH HOH . N 6 HOH A 80 688 688 HOH HOH . N 6 HOH A 81 689 689 HOH HOH . N 6 HOH A 82 690 690 HOH HOH . N 6 HOH A 83 691 691 HOH HOH . N 6 HOH A 84 692 692 HOH HOH . N 6 HOH A 85 693 693 HOH HOH . N 6 HOH A 86 694 694 HOH HOH . N 6 HOH A 87 695 695 HOH HOH . N 6 HOH A 88 696 696 HOH HOH . N 6 HOH A 89 697 697 HOH HOH . N 6 HOH A 90 698 698 HOH HOH . N 6 HOH A 91 699 699 HOH HOH . N 6 HOH A 92 700 700 HOH HOH . N 6 HOH A 93 701 701 HOH HOH . N 6 HOH A 94 702 702 HOH HOH . N 6 HOH A 95 703 703 HOH HOH . N 6 HOH A 96 704 704 HOH HOH . N 6 HOH A 97 705 705 HOH HOH . N 6 HOH A 98 706 706 HOH HOH . N 6 HOH A 99 707 707 HOH HOH . N 6 HOH A 100 708 708 HOH HOH . N 6 HOH A 101 709 709 HOH HOH . N 6 HOH A 102 710 710 HOH HOH . N 6 HOH A 103 711 711 HOH HOH . N 6 HOH A 104 712 712 HOH HOH . N 6 HOH A 105 713 713 HOH HOH . N 6 HOH A 106 714 714 HOH HOH . N 6 HOH A 107 715 715 HOH HOH . N 6 HOH A 108 716 716 HOH HOH . N 6 HOH A 109 717 717 HOH HOH . N 6 HOH A 110 718 718 HOH HOH . N 6 HOH A 111 719 719 HOH HOH . N 6 HOH A 112 720 720 HOH HOH . N 6 HOH A 113 721 721 HOH HOH . N 6 HOH A 114 722 722 HOH HOH . N 6 HOH A 115 723 723 HOH HOH . N 6 HOH A 116 724 724 HOH HOH . N 6 HOH A 117 725 725 HOH HOH . N 6 HOH A 118 726 726 HOH HOH . N 6 HOH A 119 727 727 HOH HOH . N 6 HOH A 120 728 728 HOH HOH . N 6 HOH A 121 729 729 HOH HOH . N 6 HOH A 122 730 730 HOH HOH . N 6 HOH A 123 731 731 HOH HOH . N 6 HOH A 124 732 732 HOH HOH . N 6 HOH A 125 733 733 HOH HOH . N 6 HOH A 126 734 734 HOH HOH . N 6 HOH A 127 735 735 HOH HOH . N 6 HOH A 128 736 736 HOH HOH . N 6 HOH A 129 737 737 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 24.953 -0.17 8.164 1 74.3 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . D 3 24.018 -0.619 7.034 1 79.32 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . D 3 22.528 -0.285 7.274 1 80.29 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . D 3 22.114 -0.044 8.739 1 80.38 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . D 3 23.237 0.608 9.557 1 79.42 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . D 3 22.884 0.876 11.03 1 79.8 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . D 3 24.243 -0.457 4.576 1 82.89 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . D 3 23.783 0.56 3.563 1 82.33 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . D 3 24.5 0.012 5.8 1 80.99 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . D 3 21.725 -1.332 6.753 1 81.4 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . D 3 20.943 0.754 8.788 1 80.64 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . D 3 24.356 -0.249 9.453 1 76.32 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . D 3 22.239 -0.225 11.647 1 80.27 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . D 3 24.374 -1.649 4.268 1 83.66 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #