data_3MJR # _model_server_result.job_id 0OwdfO3z-7LiMh7lr5alwg _model_server_result.datetime_utc '2024-11-21 17:32:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mjr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3MJR # _exptl.entry_id 3MJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-HYROXYETHOXYMETHYLGUANINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MJR _cell.length_a 97.31 _cell.length_b 97.31 _cell.length_c 121.5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,D,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 J N N # _chem_comp.formula 'C8 H11 N5 O3' _chem_comp.formula_weight 225.205 _chem_comp.id AC2 _chem_comp.mon_nstd_flag . _chem_comp.name 9-HYROXYETHOXYMETHYLGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3' O3' AC2 sing 1 n n C3' C2' AC2 sing 2 n n C3' "H3'1" AC2 sing 3 n n C3' "H3'2" AC2 sing 4 n n O3' "HO'3" AC2 sing 5 n n C2' O1' AC2 sing 6 n n C2' "H2'1" AC2 sing 7 n n C2' "H2'2" AC2 sing 8 n n O1' C1' AC2 sing 9 n n C1' N9 AC2 sing 10 n n C1' "H1'1" AC2 sing 11 n n C1' "H1'2" AC2 sing 12 n n N9 C8 AC2 sing 13 n y N9 C4 AC2 sing 14 n y C8 N7 AC2 doub 15 n y C8 H8 AC2 sing 16 n n N7 C5 AC2 sing 17 n y C5 C6 AC2 sing 18 n n C5 C4 AC2 doub 19 n y C6 O6 AC2 doub 20 n n C6 N1 AC2 sing 21 n n N1 C2 AC2 sing 22 n n N1 HN1 AC2 sing 23 n n C2 N2 AC2 sing 24 n n C2 N3 AC2 doub 25 n n N2 HN21 AC2 sing 26 n n N2 HN22 AC2 sing 27 n n N3 C4 AC2 sing 28 n n # _atom_sites.entry_id 3MJR _atom_sites.fract_transf_matrix[1][1] 0.010276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AC2 A 1 301 301 AC2 AC2 . F 3 UDP A 1 261 301 UDP UDP . G 2 AC2 B 1 401 401 AC2 AC2 . H 3 UDP B 1 261 401 UDP UDP . I 3 UDP C 1 501 501 UDP UDP . J 2 AC2 D 1 601 601 AC2 AC2 . K 3 UDP D 1 261 601 UDP UDP . L 4 HOH A 1 262 5 HOH HOH . L 4 HOH A 2 263 7 HOH HOH . L 4 HOH A 3 264 10 HOH HOH . L 4 HOH A 4 265 14 HOH HOH . L 4 HOH A 5 266 20 HOH HOH . L 4 HOH A 6 267 21 HOH HOH . L 4 HOH A 7 268 27 HOH HOH . L 4 HOH A 8 269 29 HOH HOH . L 4 HOH A 9 270 31 HOH HOH . L 4 HOH A 10 271 32 HOH HOH . L 4 HOH A 11 272 35 HOH HOH . L 4 HOH A 12 273 41 HOH HOH . L 4 HOH A 13 274 55 HOH HOH . L 4 HOH A 14 275 68 HOH HOH . L 4 HOH A 15 276 71 HOH HOH . L 4 HOH A 16 277 73 HOH HOH . L 4 HOH A 17 278 74 HOH HOH . L 4 HOH A 18 279 77 HOH HOH . L 4 HOH A 19 280 78 HOH HOH . L 4 HOH A 20 281 80 HOH HOH . L 4 HOH A 21 282 88 HOH HOH . L 4 HOH A 22 283 91 HOH HOH . M 4 HOH B 1 262 2 HOH HOH . M 4 HOH B 2 263 3 HOH HOH . M 4 HOH B 3 264 4 HOH HOH . M 4 HOH B 4 265 6 HOH HOH . M 4 HOH B 5 266 8 HOH HOH . M 4 HOH B 6 267 9 HOH HOH . M 4 HOH B 7 268 15 HOH HOH . M 4 HOH B 8 269 18 HOH HOH . M 4 HOH B 9 270 19 HOH HOH . M 4 HOH B 10 271 22 HOH HOH . M 4 HOH B 11 272 23 HOH HOH . M 4 HOH B 12 273 24 HOH HOH . M 4 HOH B 13 274 26 HOH HOH . M 4 HOH B 14 275 30 HOH HOH . M 4 HOH B 15 276 33 HOH HOH . M 4 HOH B 16 277 38 HOH HOH . M 4 HOH B 17 278 42 HOH HOH . M 4 HOH B 18 279 44 HOH HOH . M 4 HOH B 19 280 45 HOH HOH . M 4 HOH B 20 281 50 HOH HOH . M 4 HOH B 21 282 54 HOH HOH . M 4 HOH B 22 283 57 HOH HOH . M 4 HOH B 23 284 69 HOH HOH . M 4 HOH B 24 285 70 HOH HOH . M 4 HOH B 25 286 83 HOH HOH . M 4 HOH B 26 287 87 HOH HOH . M 4 HOH B 27 288 89 HOH HOH . M 4 HOH B 28 289 90 HOH HOH . M 4 HOH B 29 290 94 HOH HOH . M 4 HOH B 30 291 96 HOH HOH . M 4 HOH B 31 292 97 HOH HOH . M 4 HOH B 32 293 99 HOH HOH . N 4 HOH C 1 261 11 HOH HOH . N 4 HOH C 2 262 40 HOH HOH . N 4 HOH C 3 263 53 HOH HOH . N 4 HOH C 4 264 63 HOH HOH . N 4 HOH C 5 265 72 HOH HOH . N 4 HOH C 6 266 75 HOH HOH . N 4 HOH C 7 267 82 HOH HOH . O 4 HOH D 1 262 39 HOH HOH . O 4 HOH D 2 263 52 HOH HOH . O 4 HOH D 3 264 62 HOH HOH . O 4 HOH D 4 265 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3' AC2 . . . E 2 12.948 18.363 10.772 1 65.13 ? C3' AC2 301 A 1 HETATM 2 O O3' AC2 . . . E 2 12.273 18.578 12.016 1 65.79 ? O3' AC2 301 A 1 HETATM 3 C C2' AC2 . . . E 2 12.174 17.359 9.928 1 65.05 ? C2' AC2 301 A 1 HETATM 4 O O1' AC2 . . . E 2 10.924 17.934 9.552 1 64.13 ? O1' AC2 301 A 1 HETATM 5 C C1' AC2 . . . E 2 10.918 18.35 8.188 1 63.77 ? C1' AC2 301 A 1 HETATM 6 N N9 AC2 . . . E 2 11.24 19.774 8.113 1 63.41 ? N9 AC2 301 A 1 HETATM 7 C C8 AC2 . . . E 2 12.461 20.286 7.905 1 63.24 ? C8 AC2 301 A 1 HETATM 8 N N7 AC2 . . . E 2 12.376 21.635 7.896 1 63.08 ? N7 AC2 301 A 1 HETATM 9 C C5 AC2 . . . E 2 11.088 21.972 8.101 1 62.44 ? C5 AC2 301 A 1 HETATM 10 C C6 AC2 . . . E 2 10.419 23.193 8.184 1 62.19 ? C6 AC2 301 A 1 HETATM 11 O O6 AC2 . . . E 2 11.081 24.376 8.059 1 61.62 ? O6 AC2 301 A 1 HETATM 12 N N1 AC2 . . . E 2 9.087 23.199 8.4 1 62.15 ? N1 AC2 301 A 1 HETATM 13 C C2 AC2 . . . E 2 8.408 22.038 8.533 1 61.63 ? C2 AC2 301 A 1 HETATM 14 N N2 AC2 . . . E 2 7.081 22.087 8.746 1 61.33 ? N2 AC2 301 A 1 HETATM 15 N N3 AC2 . . . E 2 9.035 20.839 8.451 1 62.39 ? N3 AC2 301 A 1 HETATM 16 C C4 AC2 . . . E 2 10.375 20.788 8.238 1 62.84 ? C4 AC2 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 441 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #