data_3MKE # _model_server_result.job_id xNvMsNEUM1gOYsv-zzHsYw _model_server_result.datetime_utc '2025-01-02 17:55:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3MKE # _exptl.entry_id 3MKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.125 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PINACOL[[2-AMINO-ALPHA-(1-CARBOXY-1-METHYLETHOXYIMINO)-4-THIAZOLEACETYL]AMINO]METHANEBORONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MKE _cell.length_a 49.554 _cell.length_b 56.484 _cell.length_c 82.067 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 52 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 77 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 98 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 123 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 B N4 O6 S' _chem_comp.formula_weight 330.125 _chem_comp.id CB4 _chem_comp.mon_nstd_flag . _chem_comp.name PINACOL[[2-AMINO-ALPHA-(1-CARBOXY-1-METHYLETHOXYIMINO)-4-THIAZOLEACETYL]AMINO]METHANEBORONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag B OB1 CB4 sing 70 n n B OB2 CB4 sing 71 n n B C7 CB4 sing 72 n n OB1 HB1O CB4 sing 73 n n OB2 HB2O CB4 sing 74 n n C7 N10 CB4 sing 75 n n C7 HC71 CB4 sing 76 n n C7 HC72 CB4 sing 77 n n N10 C11 CB4 sing 78 n n N10 H10N CB4 sing 79 n n C11 O12 CB4 doub 80 n n C11 C13 CB4 sing 81 n n C13 N16 CB4 doub 82 z n C13 C14 CB4 sing 83 n n N16 O17 CB4 sing 84 n n O17 C18 CB4 sing 85 n n C18 C19 CB4 sing 86 n n C18 C20 CB4 sing 87 n n C18 C21 CB4 sing 88 n n C14 C15 CB4 doub 89 n y C14 N19 CB4 sing 90 n y C15 S16 CB4 sing 91 n y C15 H15C CB4 sing 92 n n S16 C17 CB4 sing 93 n y C17 N18 CB4 sing 94 n n C17 N19 CB4 doub 95 n y N18 H181 CB4 sing 96 n n N18 H182 CB4 sing 97 n n C19 H191 CB4 sing 98 n n C19 H192 CB4 sing 99 n n C19 H193 CB4 sing 100 n n C20 H201 CB4 sing 101 n n C20 H202 CB4 sing 102 n n C20 H203 CB4 sing 103 n n C21 O2A CB4 doub 104 n n C21 O2B CB4 sing 105 n n O2B H2BO CB4 sing 106 n n # _atom_sites.entry_id 3MKE _atom_sites.fract_transf_matrix[1][1] 0.02018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MA4 A 1 400 400 MA4 MA4 . C 2 MA4 A 1 401 401 MA4 MA4 . D 3 CB4 A 1 1 1 CB4 CB4 . E 4 CZ6 A 1 293 1 CZ6 CZ6 . F 5 HOH A 1 2 2 HOH HOH . F 5 HOH A 2 3 3 HOH HOH . F 5 HOH A 3 4 4 HOH HOH . F 5 HOH A 4 5 5 HOH HOH . F 5 HOH A 5 6 6 HOH HOH . F 5 HOH A 6 7 7 HOH HOH . F 5 HOH A 7 8 8 HOH HOH . F 5 HOH A 8 9 9 HOH HOH . F 5 HOH A 9 10 10 HOH HOH . F 5 HOH A 10 11 11 HOH HOH . F 5 HOH A 11 12 12 HOH HOH . F 5 HOH A 12 13 13 HOH HOH . F 5 HOH A 13 14 14 HOH HOH . F 5 HOH A 14 15 15 HOH HOH . F 5 HOH A 15 16 16 HOH HOH . F 5 HOH A 16 17 17 HOH HOH . F 5 HOH A 17 18 18 HOH HOH . F 5 HOH A 18 19 19 HOH HOH . F 5 HOH A 19 20 20 HOH HOH . F 5 HOH A 20 21 21 HOH HOH . F 5 HOH A 21 22 22 HOH HOH . F 5 HOH A 22 23 23 HOH HOH . F 5 HOH A 23 24 24 HOH HOH . F 5 HOH A 24 25 25 HOH HOH . F 5 HOH A 25 294 1 HOH HOH . F 5 HOH A 26 295 26 HOH HOH . F 5 HOH A 27 296 27 HOH HOH . F 5 HOH A 28 297 28 HOH HOH . F 5 HOH A 29 298 29 HOH HOH . F 5 HOH A 30 299 30 HOH HOH . F 5 HOH A 31 300 31 HOH HOH . F 5 HOH A 32 301 32 HOH HOH . F 5 HOH A 33 302 33 HOH HOH . F 5 HOH A 34 303 34 HOH HOH . F 5 HOH A 35 304 35 HOH HOH . F 5 HOH A 36 305 36 HOH HOH . F 5 HOH A 37 306 37 HOH HOH . F 5 HOH A 38 307 38 HOH HOH . F 5 HOH A 39 308 39 HOH HOH . F 5 HOH A 40 309 40 HOH HOH . F 5 HOH A 41 310 41 HOH HOH . F 5 HOH A 42 311 42 HOH HOH . F 5 HOH A 43 312 43 HOH HOH . F 5 HOH A 44 313 44 HOH HOH . F 5 HOH A 45 314 45 HOH HOH . F 5 HOH A 46 315 46 HOH HOH . F 5 HOH A 47 316 47 HOH HOH . F 5 HOH A 48 317 48 HOH HOH . F 5 HOH A 49 318 49 HOH HOH . F 5 HOH A 50 319 50 HOH HOH . F 5 HOH A 51 320 51 HOH HOH . F 5 HOH A 52 321 52 HOH HOH . F 5 HOH A 53 322 53 HOH HOH . F 5 HOH A 54 323 54 HOH HOH . F 5 HOH A 55 324 55 HOH HOH . F 5 HOH A 56 325 56 HOH HOH . F 5 HOH A 57 326 57 HOH HOH . F 5 HOH A 58 327 58 HOH HOH . F 5 HOH A 59 328 59 HOH HOH . F 5 HOH A 60 329 60 HOH HOH . F 5 HOH A 61 330 61 HOH HOH . F 5 HOH A 62 331 62 HOH HOH . F 5 HOH A 63 332 63 HOH HOH . F 5 HOH A 64 333 64 HOH HOH . F 5 HOH A 65 334 65 HOH HOH . F 5 HOH A 66 335 66 HOH HOH . F 5 HOH A 67 336 67 HOH HOH . F 5 HOH A 68 337 68 HOH HOH . F 5 HOH A 69 338 69 HOH HOH . F 5 HOH A 70 339 70 HOH HOH . F 5 HOH A 71 340 71 HOH HOH . F 5 HOH A 72 341 72 HOH HOH . F 5 HOH A 73 342 73 HOH HOH . F 5 HOH A 74 343 74 HOH HOH . F 5 HOH A 75 344 75 HOH HOH . F 5 HOH A 76 345 76 HOH HOH . F 5 HOH A 77 346 77 HOH HOH . F 5 HOH A 78 347 78 HOH HOH . F 5 HOH A 79 348 79 HOH HOH . F 5 HOH A 80 349 80 HOH HOH . F 5 HOH A 81 350 81 HOH HOH . F 5 HOH A 82 351 82 HOH HOH . F 5 HOH A 83 352 83 HOH HOH . F 5 HOH A 84 353 84 HOH HOH . F 5 HOH A 85 354 85 HOH HOH . F 5 HOH A 86 355 86 HOH HOH . F 5 HOH A 87 356 87 HOH HOH . F 5 HOH A 88 357 88 HOH HOH . F 5 HOH A 89 358 89 HOH HOH . F 5 HOH A 90 359 90 HOH HOH . F 5 HOH A 91 360 91 HOH HOH . F 5 HOH A 92 361 92 HOH HOH . F 5 HOH A 93 362 93 HOH HOH . F 5 HOH A 94 363 94 HOH HOH . F 5 HOH A 95 364 95 HOH HOH . F 5 HOH A 96 365 96 HOH HOH . F 5 HOH A 97 366 97 HOH HOH . F 5 HOH A 98 367 98 HOH HOH . F 5 HOH A 99 368 99 HOH HOH . F 5 HOH A 100 369 100 HOH HOH . F 5 HOH A 101 370 101 HOH HOH . F 5 HOH A 102 371 102 HOH HOH . F 5 HOH A 103 372 103 HOH HOH . F 5 HOH A 104 373 104 HOH HOH . F 5 HOH A 105 374 105 HOH HOH . F 5 HOH A 106 375 106 HOH HOH . F 5 HOH A 107 376 107 HOH HOH . F 5 HOH A 108 377 108 HOH HOH . F 5 HOH A 109 378 109 HOH HOH . F 5 HOH A 110 379 110 HOH HOH . F 5 HOH A 111 380 111 HOH HOH . F 5 HOH A 112 381 112 HOH HOH . F 5 HOH A 113 382 113 HOH HOH . F 5 HOH A 114 383 114 HOH HOH . F 5 HOH A 115 384 115 HOH HOH . F 5 HOH A 116 385 116 HOH HOH . F 5 HOH A 117 386 117 HOH HOH . F 5 HOH A 118 387 118 HOH HOH . F 5 HOH A 119 388 119 HOH HOH . F 5 HOH A 120 389 120 HOH HOH . F 5 HOH A 121 390 121 HOH HOH . F 5 HOH A 122 391 122 HOH HOH . F 5 HOH A 123 392 123 HOH HOH . F 5 HOH A 124 393 124 HOH HOH . F 5 HOH A 125 394 125 HOH HOH . F 5 HOH A 126 395 126 HOH HOH . F 5 HOH A 127 396 127 HOH HOH . F 5 HOH A 128 397 128 HOH HOH . F 5 HOH A 129 398 129 HOH HOH . F 5 HOH A 130 399 130 HOH HOH . F 5 HOH A 131 402 131 HOH HOH . F 5 HOH A 132 403 132 HOH HOH . F 5 HOH A 133 404 133 HOH HOH . F 5 HOH A 134 405 134 HOH HOH . F 5 HOH A 135 406 135 HOH HOH . F 5 HOH A 136 407 136 HOH HOH . F 5 HOH A 137 408 137 HOH HOH . F 5 HOH A 138 409 138 HOH HOH . F 5 HOH A 139 410 139 HOH HOH . F 5 HOH A 140 411 140 HOH HOH . F 5 HOH A 141 412 141 HOH HOH . F 5 HOH A 142 413 142 HOH HOH . F 5 HOH A 143 414 143 HOH HOH . F 5 HOH A 144 415 144 HOH HOH . F 5 HOH A 145 416 145 HOH HOH . F 5 HOH A 146 417 146 HOH HOH . F 5 HOH A 147 418 147 HOH HOH . F 5 HOH A 148 419 148 HOH HOH . F 5 HOH A 149 420 149 HOH HOH . F 5 HOH A 150 421 150 HOH HOH . F 5 HOH A 151 422 151 HOH HOH . F 5 HOH A 152 423 152 HOH HOH . F 5 HOH A 153 424 153 HOH HOH . F 5 HOH A 154 425 154 HOH HOH . F 5 HOH A 155 426 155 HOH HOH . F 5 HOH A 156 427 156 HOH HOH . F 5 HOH A 157 428 157 HOH HOH . F 5 HOH A 158 429 158 HOH HOH . F 5 HOH A 159 430 159 HOH HOH . F 5 HOH A 160 431 160 HOH HOH . F 5 HOH A 161 432 161 HOH HOH . F 5 HOH A 162 433 162 HOH HOH . F 5 HOH A 163 434 163 HOH HOH . F 5 HOH A 164 435 164 HOH HOH . F 5 HOH A 165 436 165 HOH HOH . F 5 HOH A 166 437 166 HOH HOH . F 5 HOH A 167 438 167 HOH HOH . F 5 HOH A 168 439 168 HOH HOH . F 5 HOH A 169 440 169 HOH HOH . F 5 HOH A 170 441 170 HOH HOH . F 5 HOH A 171 442 171 HOH HOH . F 5 HOH A 172 443 172 HOH HOH . F 5 HOH A 173 444 173 HOH HOH . F 5 HOH A 174 445 174 HOH HOH . F 5 HOH A 175 446 175 HOH HOH . F 5 HOH A 176 447 176 HOH HOH . F 5 HOH A 177 448 177 HOH HOH . F 5 HOH A 178 449 178 HOH HOH . F 5 HOH A 179 450 179 HOH HOH . F 5 HOH A 180 451 180 HOH HOH . F 5 HOH A 181 452 181 HOH HOH . F 5 HOH A 182 453 182 HOH HOH . F 5 HOH A 183 454 183 HOH HOH . F 5 HOH A 184 455 184 HOH HOH . F 5 HOH A 185 456 185 HOH HOH . F 5 HOH A 186 457 186 HOH HOH . F 5 HOH A 187 458 187 HOH HOH . F 5 HOH A 188 459 188 HOH HOH . F 5 HOH A 189 460 189 HOH HOH . F 5 HOH A 190 461 190 HOH HOH . F 5 HOH A 191 462 191 HOH HOH . F 5 HOH A 192 463 192 HOH HOH . F 5 HOH A 193 464 193 HOH HOH . F 5 HOH A 194 465 194 HOH HOH . F 5 HOH A 195 466 195 HOH HOH . F 5 HOH A 196 467 196 HOH HOH . F 5 HOH A 197 468 197 HOH HOH . F 5 HOH A 198 469 198 HOH HOH . F 5 HOH A 199 470 199 HOH HOH . F 5 HOH A 200 471 200 HOH HOH . F 5 HOH A 201 472 201 HOH HOH . F 5 HOH A 202 473 202 HOH HOH . F 5 HOH A 203 474 203 HOH HOH . F 5 HOH A 204 475 204 HOH HOH . F 5 HOH A 205 476 205 HOH HOH . F 5 HOH A 206 477 206 HOH HOH . F 5 HOH A 207 478 207 HOH HOH . F 5 HOH A 208 479 208 HOH HOH . F 5 HOH A 209 480 209 HOH HOH . F 5 HOH A 210 481 210 HOH HOH . F 5 HOH A 211 482 211 HOH HOH . F 5 HOH A 212 483 212 HOH HOH . F 5 HOH A 213 484 213 HOH HOH . F 5 HOH A 214 485 214 HOH HOH . F 5 HOH A 215 486 215 HOH HOH . F 5 HOH A 216 487 216 HOH HOH . F 5 HOH A 217 488 217 HOH HOH . F 5 HOH A 218 489 218 HOH HOH . F 5 HOH A 219 490 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B CB4 . . . D 3 32.228 62.974 6.192 1 9.12 ? B CB4 1 A 1 HETATM 2 O OB1 CB4 . . . D 3 31.224 62.946 7.358 1 7.37 ? OB1 CB4 1 A 1 HETATM 3 O OB2 CB4 . . . D 3 33.658 63.466 6.448 1 6.51 ? OB2 CB4 1 A 1 HETATM 4 C C7 CB4 . . . D 3 31.575 63.877 5.027 1 8.83 ? C7 CB4 1 A 1 HETATM 5 N N10 CB4 . . . D 3 32.391 64.022 3.814 1 11.22 ? N10 CB4 1 A 1 HETATM 6 C C11 CB4 . . . D 3 32.007 64.837 2.818 1 17.52 ? C11 CB4 1 A 1 HETATM 7 O O12 CB4 . . . D 3 30.939 65.452 2.877 1 14.02 ? O12 CB4 1 A 1 HETATM 8 C C13 CB4 . . . D 3 32.843 64.991 1.62 1 19.56 ? C13 CB4 1 A 1 HETATM 9 N N16 CB4 . . . D 3 33.927 64.301 1.378 1 20.21 ? N16 CB4 1 A 1 HETATM 10 O O17 CB4 . . . D 3 34.477 63.354 2.152 1 20.42 ? O17 CB4 1 A 1 HETATM 11 C C18 CB4 . . . D 3 35.793 62.946 1.781 1 19 ? C18 CB4 1 A 1 HETATM 12 C C14 CB4 . . . D 3 32.577 65.966 0.541 1 20.88 ? C14 CB4 1 A 1 HETATM 13 C C15 CB4 . . . D 3 31.499 66.854 0.521 1 21.38 ? C15 CB4 1 A 1 HETATM 14 S S16 CB4 . . . D 3 31.535 67.823 -0.923 1 22.66 ? S16 CB4 1 A 1 HETATM 15 C C17 CB4 . . . D 3 32.968 66.991 -1.391 1 21.41 ? C17 CB4 1 A 1 HETATM 16 N N18 CB4 . . . D 3 33.606 67.288 -2.562 1 21.81 ? N18 CB4 1 A 1 HETATM 17 N N19 CB4 . . . D 3 33.41 66.041 -0.545 1 21 ? N19 CB4 1 A 1 HETATM 18 C C19 CB4 . . . D 3 35.74 62.298 0.401 1 18.15 ? C19 CB4 1 A 1 HETATM 19 C C20 CB4 . . . D 3 36.817 64.093 1.79 1 19.3 ? C20 CB4 1 A 1 HETATM 20 C C21 CB4 . . . D 3 36.142 61.945 2.824 1 17.3 ? C21 CB4 1 A 1 HETATM 21 O O2A CB4 . . . D 3 37.335 61.783 3.118 1 19.3 ? O2A CB4 1 A 1 HETATM 22 O O2B CB4 . . . D 3 35.187 61.358 3.359 1 17.46 ? O2B CB4 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 22 #