data_3MKP # _model_server_result.job_id vxZPHGutSNIlG1YEd4djsA _model_server_result.datetime_utc '2024-11-16 04:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2}' # _entry.id 3MKP # _exptl.entry_id 3MKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MKP _cell.length_a 129.73 _cell.length_b 129.73 _cell.length_c 118.19 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,O,P 1 1 C,D,E,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 IDS SGN C1 O1 . O4 HO4 . sing 2 ? 2 3 2 SGN IDS C1 O1 . O4 HO4 . sing 3 ? 2 4 3 IDS SGN C1 O1 . O4 HO4 . sing 4 ? 2 5 4 SGN IDS C1 O1 . O4 HO4 . sing 5 ? 2 6 5 IDS SGN C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E SGN 1 E 1 SGN X 2 SGN 2 n E IDS 2 E 2 IDS X 3 IDS 2 n E SGN 3 E 3 SGN X 4 SGN 2 n E IDS 4 E 4 IDS X 5 IDS 2 n E SGN 5 E 5 SGN X 6 SGN 2 n E IDS 6 E 6 IDS X 7 IDS # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 70 1_555 A SG CYS 69 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 47 A CYS 74 1_555 A SG CYS 57 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 101 A CYS 128 1_555 A SG CYS 179 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 122 A CYS 149 1_555 A SG CYS 162 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 150 A CYS 177 1_555 A SG CYS 174 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 43 B CYS 70 1_555 B SG CYS 69 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 B SG CYS 47 B CYS 74 1_555 B SG CYS 57 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf8 B SG CYS 101 B CYS 128 1_555 B SG CYS 179 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 B SG CYS 122 B CYS 149 1_555 B SG CYS 162 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf10 B SG CYS 150 B CYS 177 1_555 B SG CYS 174 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 C SG CYS 43 C CYS 70 1_555 C SG CYS 69 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 C SG CYS 47 C CYS 74 1_555 C SG CYS 57 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf13 C SG CYS 101 C CYS 128 1_555 C SG CYS 179 C CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf14 C SG CYS 122 C CYS 149 1_555 C SG CYS 162 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 C SG CYS 150 C CYS 177 1_555 C SG CYS 174 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 D SG CYS 43 D CYS 70 1_555 D SG CYS 69 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf17 D SG CYS 47 D CYS 74 1_555 D SG CYS 57 D CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf18 D SG CYS 101 D CYS 128 1_555 D SG CYS 179 D CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf19 D SG CYS 122 D CYS 149 1_555 D SG CYS 162 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf20 D SG CYS 150 D CYS 177 1_555 D SG CYS 174 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 E O4 SGN . E SGN 1 1_555 E C1 IDS . E IDS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 E O4 IDS . E IDS 2 1_555 E C1 SGN . E SGN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 E O4 SGN . E SGN 3 1_555 E C1 IDS . E IDS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 E O4 IDS . E IDS 4 1_555 E C1 SGN . E SGN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E O4 SGN . E SGN 5 1_555 E C1 IDS . E IDS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 383 n n S O2 SO4 doub 384 n n S O3 SO4 sing 385 n n S O4 SO4 sing 386 n n # _atom_sites.entry_id 3MKP _atom_sites.fract_transf_matrix[1][1] 0.007708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 SO4 A 1 1 1 SO4 SO4 . G 4 EPE A 1 211 1 EPE EPE . H 5 SGN A 1 3 3 SGN SGN . I 3 SO4 B 1 2 2 SO4 SO4 . J 4 EPE B 1 211 2 EPE EPE . K 3 SO4 C 1 3 3 SO4 SO4 . L 4 EPE C 1 211 3 EPE EPE . M 3 SO4 D 1 4 4 SO4 SO4 . N 4 EPE D 1 211 4 EPE EPE . O 6 HOH A 1 2 2 HOH HOH . O 6 HOH A 2 4 4 HOH HOH . O 6 HOH A 3 5 5 HOH HOH . O 6 HOH A 4 6 6 HOH HOH . O 6 HOH A 5 7 7 HOH HOH . O 6 HOH A 6 8 8 HOH HOH . O 6 HOH A 7 9 9 HOH HOH . O 6 HOH A 8 10 10 HOH HOH . O 6 HOH A 9 11 11 HOH HOH . O 6 HOH A 10 12 12 HOH HOH . O 6 HOH A 11 13 13 HOH HOH . O 6 HOH A 12 14 14 HOH HOH . O 6 HOH A 13 15 15 HOH HOH . O 6 HOH A 14 16 16 HOH HOH . O 6 HOH A 15 17 17 HOH HOH . O 6 HOH A 16 212 1 HOH HOH . O 6 HOH A 17 213 3 HOH HOH . O 6 HOH A 18 214 65 HOH HOH . O 6 HOH A 19 215 66 HOH HOH . O 6 HOH A 20 216 67 HOH HOH . O 6 HOH A 21 217 68 HOH HOH . O 6 HOH A 22 218 69 HOH HOH . O 6 HOH A 23 219 70 HOH HOH . O 6 HOH A 24 220 71 HOH HOH . O 6 HOH A 25 221 72 HOH HOH . O 6 HOH A 26 222 73 HOH HOH . O 6 HOH A 27 223 74 HOH HOH . O 6 HOH A 28 224 75 HOH HOH . O 6 HOH A 29 225 76 HOH HOH . O 6 HOH A 30 226 96 HOH HOH . O 6 HOH A 31 227 97 HOH HOH . P 6 HOH B 1 18 18 HOH HOH . P 6 HOH B 2 19 19 HOH HOH . P 6 HOH B 3 20 20 HOH HOH . P 6 HOH B 4 21 21 HOH HOH . P 6 HOH B 5 22 22 HOH HOH . P 6 HOH B 6 23 23 HOH HOH . P 6 HOH B 7 24 24 HOH HOH . P 6 HOH B 8 25 25 HOH HOH . P 6 HOH B 9 26 26 HOH HOH . P 6 HOH B 10 27 27 HOH HOH . P 6 HOH B 11 212 28 HOH HOH . P 6 HOH B 12 213 29 HOH HOH . P 6 HOH B 13 214 30 HOH HOH . P 6 HOH B 14 215 31 HOH HOH . P 6 HOH B 15 216 77 HOH HOH . P 6 HOH B 16 217 78 HOH HOH . P 6 HOH B 17 218 79 HOH HOH . P 6 HOH B 18 219 80 HOH HOH . P 6 HOH B 19 220 81 HOH HOH . P 6 HOH B 20 221 82 HOH HOH . P 6 HOH B 21 222 83 HOH HOH . P 6 HOH B 22 223 84 HOH HOH . P 6 HOH B 23 224 85 HOH HOH . P 6 HOH B 24 225 86 HOH HOH . P 6 HOH B 25 226 98 HOH HOH . Q 6 HOH C 1 213 32 HOH HOH . Q 6 HOH C 2 214 33 HOH HOH . Q 6 HOH C 3 215 34 HOH HOH . Q 6 HOH C 4 216 35 HOH HOH . Q 6 HOH C 5 217 38 HOH HOH . Q 6 HOH C 6 218 39 HOH HOH . Q 6 HOH C 7 219 40 HOH HOH . Q 6 HOH C 8 220 41 HOH HOH . Q 6 HOH C 9 221 87 HOH HOH . Q 6 HOH C 10 222 88 HOH HOH . Q 6 HOH C 11 223 89 HOH HOH . Q 6 HOH C 12 224 90 HOH HOH . Q 6 HOH C 13 225 91 HOH HOH . Q 6 HOH C 14 226 92 HOH HOH . Q 6 HOH C 15 227 99 HOH HOH . R 6 HOH D 1 212 36 HOH HOH . R 6 HOH D 2 213 37 HOH HOH . R 6 HOH D 3 214 42 HOH HOH . R 6 HOH D 4 215 43 HOH HOH . R 6 HOH D 5 216 44 HOH HOH . R 6 HOH D 6 217 45 HOH HOH . R 6 HOH D 7 218 46 HOH HOH . R 6 HOH D 8 219 47 HOH HOH . R 6 HOH D 9 220 48 HOH HOH . R 6 HOH D 10 221 49 HOH HOH . R 6 HOH D 11 222 50 HOH HOH . R 6 HOH D 12 223 51 HOH HOH . R 6 HOH D 13 224 52 HOH HOH . R 6 HOH D 14 225 53 HOH HOH . R 6 HOH D 15 226 54 HOH HOH . R 6 HOH D 16 227 55 HOH HOH . R 6 HOH D 17 228 56 HOH HOH . R 6 HOH D 18 229 57 HOH HOH . R 6 HOH D 19 230 58 HOH HOH . R 6 HOH D 20 231 59 HOH HOH . R 6 HOH D 21 232 60 HOH HOH . R 6 HOH D 22 233 61 HOH HOH . R 6 HOH D 23 234 62 HOH HOH . R 6 HOH D 24 235 63 HOH HOH . R 6 HOH D 25 236 64 HOH HOH . R 6 HOH D 26 237 93 HOH HOH . R 6 HOH D 27 238 94 HOH HOH . R 6 HOH D 28 239 95 HOH HOH . R 6 HOH D 29 240 100 HOH HOH . R 6 HOH D 30 241 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 3 -12.025 38.302 -1.816 1 14.61 ? S SO4 2 B 1 HETATM 2 O O1 SO4 . . . I 3 -10.789 38.038 -2.54 1 11.2 ? O1 SO4 2 B 1 HETATM 3 O O2 SO4 . . . I 3 -12.967 38.979 -2.703 1 19.19 ? O2 SO4 2 B 1 HETATM 4 O O3 SO4 . . . I 3 -12.583 37.042 -1.36 1 10.18 ? O3 SO4 2 B 1 HETATM 5 O O4 SO4 . . . I 3 -11.769 39.163 -0.659 1 12.95 ? O4 SO4 2 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 5 #