data_3MKP # _model_server_result.job_id BbMgOMr2-KkUybwoGzz9Hw _model_server_result.datetime_utc '2024-11-16 04:51:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":211}' # _entry.id 3MKP # _exptl.entry_id 3MKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MKP _cell.length_a 129.73 _cell.length_b 129.73 _cell.length_c 118.19 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,O,P 1 1 C,D,E,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 L N N ? 4 N N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 IDS SGN C1 O1 . O4 HO4 . sing 2 ? 2 3 2 SGN IDS C1 O1 . O4 HO4 . sing 3 ? 2 4 3 IDS SGN C1 O1 . O4 HO4 . sing 4 ? 2 5 4 SGN IDS C1 O1 . O4 HO4 . sing 5 ? 2 6 5 IDS SGN C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E SGN 1 E 1 SGN X 2 SGN 2 n E IDS 2 E 2 IDS X 3 IDS 2 n E SGN 3 E 3 SGN X 4 SGN 2 n E IDS 4 E 4 IDS X 5 IDS 2 n E SGN 5 E 5 SGN X 6 SGN 2 n E IDS 6 E 6 IDS X 7 IDS # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 70 1_555 A SG CYS 69 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 47 A CYS 74 1_555 A SG CYS 57 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 101 A CYS 128 1_555 A SG CYS 179 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 122 A CYS 149 1_555 A SG CYS 162 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 150 A CYS 177 1_555 A SG CYS 174 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 43 B CYS 70 1_555 B SG CYS 69 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 B SG CYS 47 B CYS 74 1_555 B SG CYS 57 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf8 B SG CYS 101 B CYS 128 1_555 B SG CYS 179 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 B SG CYS 122 B CYS 149 1_555 B SG CYS 162 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf10 B SG CYS 150 B CYS 177 1_555 B SG CYS 174 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 C SG CYS 43 C CYS 70 1_555 C SG CYS 69 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 C SG CYS 47 C CYS 74 1_555 C SG CYS 57 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf13 C SG CYS 101 C CYS 128 1_555 C SG CYS 179 C CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf14 C SG CYS 122 C CYS 149 1_555 C SG CYS 162 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 C SG CYS 150 C CYS 177 1_555 C SG CYS 174 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 D SG CYS 43 D CYS 70 1_555 D SG CYS 69 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf17 D SG CYS 47 D CYS 74 1_555 D SG CYS 57 D CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf18 D SG CYS 101 D CYS 128 1_555 D SG CYS 179 D CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf19 D SG CYS 122 D CYS 149 1_555 D SG CYS 162 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf20 D SG CYS 150 D CYS 177 1_555 D SG CYS 174 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 E O4 SGN . E SGN 1 1_555 E C1 IDS . E IDS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 E O4 IDS . E IDS 2 1_555 E C1 SGN . E SGN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 E O4 SGN . E SGN 3 1_555 E C1 IDS . E IDS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 E O4 IDS . E IDS 4 1_555 E C1 SGN . E SGN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E O4 SGN . E SGN 5 1_555 E C1 IDS . E IDS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 3MKP _atom_sites.fract_transf_matrix[1][1] 0.007708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 SO4 A 1 1 1 SO4 SO4 . G 4 EPE A 1 211 1 EPE EPE . H 5 SGN A 1 3 3 SGN SGN . I 3 SO4 B 1 2 2 SO4 SO4 . J 4 EPE B 1 211 2 EPE EPE . K 3 SO4 C 1 3 3 SO4 SO4 . L 4 EPE C 1 211 3 EPE EPE . M 3 SO4 D 1 4 4 SO4 SO4 . N 4 EPE D 1 211 4 EPE EPE . O 6 HOH A 1 2 2 HOH HOH . O 6 HOH A 2 4 4 HOH HOH . O 6 HOH A 3 5 5 HOH HOH . O 6 HOH A 4 6 6 HOH HOH . O 6 HOH A 5 7 7 HOH HOH . O 6 HOH A 6 8 8 HOH HOH . O 6 HOH A 7 9 9 HOH HOH . O 6 HOH A 8 10 10 HOH HOH . O 6 HOH A 9 11 11 HOH HOH . O 6 HOH A 10 12 12 HOH HOH . O 6 HOH A 11 13 13 HOH HOH . O 6 HOH A 12 14 14 HOH HOH . O 6 HOH A 13 15 15 HOH HOH . O 6 HOH A 14 16 16 HOH HOH . O 6 HOH A 15 17 17 HOH HOH . O 6 HOH A 16 212 1 HOH HOH . O 6 HOH A 17 213 3 HOH HOH . O 6 HOH A 18 214 65 HOH HOH . O 6 HOH A 19 215 66 HOH HOH . O 6 HOH A 20 216 67 HOH HOH . O 6 HOH A 21 217 68 HOH HOH . O 6 HOH A 22 218 69 HOH HOH . O 6 HOH A 23 219 70 HOH HOH . O 6 HOH A 24 220 71 HOH HOH . O 6 HOH A 25 221 72 HOH HOH . O 6 HOH A 26 222 73 HOH HOH . O 6 HOH A 27 223 74 HOH HOH . O 6 HOH A 28 224 75 HOH HOH . O 6 HOH A 29 225 76 HOH HOH . O 6 HOH A 30 226 96 HOH HOH . O 6 HOH A 31 227 97 HOH HOH . P 6 HOH B 1 18 18 HOH HOH . P 6 HOH B 2 19 19 HOH HOH . P 6 HOH B 3 20 20 HOH HOH . P 6 HOH B 4 21 21 HOH HOH . P 6 HOH B 5 22 22 HOH HOH . P 6 HOH B 6 23 23 HOH HOH . P 6 HOH B 7 24 24 HOH HOH . P 6 HOH B 8 25 25 HOH HOH . P 6 HOH B 9 26 26 HOH HOH . P 6 HOH B 10 27 27 HOH HOH . P 6 HOH B 11 212 28 HOH HOH . P 6 HOH B 12 213 29 HOH HOH . P 6 HOH B 13 214 30 HOH HOH . P 6 HOH B 14 215 31 HOH HOH . P 6 HOH B 15 216 77 HOH HOH . P 6 HOH B 16 217 78 HOH HOH . P 6 HOH B 17 218 79 HOH HOH . P 6 HOH B 18 219 80 HOH HOH . P 6 HOH B 19 220 81 HOH HOH . P 6 HOH B 20 221 82 HOH HOH . P 6 HOH B 21 222 83 HOH HOH . P 6 HOH B 22 223 84 HOH HOH . P 6 HOH B 23 224 85 HOH HOH . P 6 HOH B 24 225 86 HOH HOH . P 6 HOH B 25 226 98 HOH HOH . Q 6 HOH C 1 213 32 HOH HOH . Q 6 HOH C 2 214 33 HOH HOH . Q 6 HOH C 3 215 34 HOH HOH . Q 6 HOH C 4 216 35 HOH HOH . Q 6 HOH C 5 217 38 HOH HOH . Q 6 HOH C 6 218 39 HOH HOH . Q 6 HOH C 7 219 40 HOH HOH . Q 6 HOH C 8 220 41 HOH HOH . Q 6 HOH C 9 221 87 HOH HOH . Q 6 HOH C 10 222 88 HOH HOH . Q 6 HOH C 11 223 89 HOH HOH . Q 6 HOH C 12 224 90 HOH HOH . Q 6 HOH C 13 225 91 HOH HOH . Q 6 HOH C 14 226 92 HOH HOH . Q 6 HOH C 15 227 99 HOH HOH . R 6 HOH D 1 212 36 HOH HOH . R 6 HOH D 2 213 37 HOH HOH . R 6 HOH D 3 214 42 HOH HOH . R 6 HOH D 4 215 43 HOH HOH . R 6 HOH D 5 216 44 HOH HOH . R 6 HOH D 6 217 45 HOH HOH . R 6 HOH D 7 218 46 HOH HOH . R 6 HOH D 8 219 47 HOH HOH . R 6 HOH D 9 220 48 HOH HOH . R 6 HOH D 10 221 49 HOH HOH . R 6 HOH D 11 222 50 HOH HOH . R 6 HOH D 12 223 51 HOH HOH . R 6 HOH D 13 224 52 HOH HOH . R 6 HOH D 14 225 53 HOH HOH . R 6 HOH D 15 226 54 HOH HOH . R 6 HOH D 16 227 55 HOH HOH . R 6 HOH D 17 228 56 HOH HOH . R 6 HOH D 18 229 57 HOH HOH . R 6 HOH D 19 230 58 HOH HOH . R 6 HOH D 20 231 59 HOH HOH . R 6 HOH D 21 232 60 HOH HOH . R 6 HOH D 22 233 61 HOH HOH . R 6 HOH D 23 234 62 HOH HOH . R 6 HOH D 24 235 63 HOH HOH . R 6 HOH D 25 236 64 HOH HOH . R 6 HOH D 26 237 93 HOH HOH . R 6 HOH D 27 238 94 HOH HOH . R 6 HOH D 28 239 95 HOH HOH . R 6 HOH D 29 240 100 HOH HOH . R 6 HOH D 30 241 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . J 4 -24.184 36.882 13.002 1 41.49 ? N1 EPE 211 B 1 HETATM 2 C C2 EPE . . . J 4 -22.766 36.76 12.609 1 41.84 ? C2 EPE 211 B 1 HETATM 3 C C3 EPE . . . J 4 -21.856 36.76 13.825 1 41.92 ? C3 EPE 211 B 1 HETATM 4 N N4 EPE . . . J 4 -22.147 37.889 14.689 1 43.22 ? N4 EPE 211 B 1 HETATM 5 C C5 EPE . . . J 4 -23.546 38.149 14.985 1 43.61 ? C5 EPE 211 B 1 HETATM 6 C C6 EPE . . . J 4 -24.405 38.151 13.72 1 41.7 ? C6 EPE 211 B 1 HETATM 7 C C7 EPE . . . J 4 -21.202 38.998 14.793 1 43.88 ? C7 EPE 211 B 1 HETATM 8 C C8 EPE . . . J 4 -19.759 38.628 15.181 1 46.47 ? C8 EPE 211 B 1 HETATM 9 O O8 EPE . . . J 4 -19.701 37.527 16.073 1 45.7 ? O8 EPE 211 B 1 HETATM 10 C C9 EPE . . . J 4 -25.009 36.866 11.783 1 37.8 ? C9 EPE 211 B 1 HETATM 11 C C10 EPE . . . J 4 -25.13 35.435 11.269 1 30.33 ? C10 EPE 211 B 1 HETATM 12 S S EPE . . . J 4 -26.746 35.065 10.539 1 28.06 ? S EPE 211 B 1 HETATM 13 O O1S EPE . . . J 4 -27.26 33.858 11.206 1 22.2 ? O1S EPE 211 B 1 HETATM 14 O O2S EPE . . . J 4 -26.656 34.855 9.092 1 24.44 ? O2S EPE 211 B 1 HETATM 15 O O3S EPE . . . J 4 -27.62 36.212 10.734 1 23.48 ? O3S EPE 211 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #