data_3ML9 # _model_server_result.job_id GIvmSyQsFRGsg9LjkzGJIg _model_server_result.datetime_utc '2024-11-15 08:17:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ml9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9999}' # _entry.id 3ML9 # _exptl.entry_id 3ML9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-8-[trans-4-(2-hydroxyethoxy)cyclohexyl]-6-(6-methoxypyridin-3-yl)-4-methylpyrido[2,3-d]pyrimidin-7(8H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.46 _cell.angle_gamma 90 _cell.entry_id 3ML9 _cell.length_a 143.929 _cell.length_b 67.294 _cell.length_c 106.842 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ML9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H27 N5 O4' _chem_comp.formula_weight 425.481 _chem_comp.id ML9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-8-[trans-4-(2-hydroxyethoxy)cyclohexyl]-6-(6-methoxypyridin-3-yl)-4-methylpyrido[2,3-d]pyrimidin-7(8H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 ML9 doub 237 n y C14 C15 ML9 sing 238 n y C14 H14 ML9 sing 239 n n C16 C15 ML9 doub 240 n y C15 H15 ML9 sing 241 n n C18 N17 ML9 doub 242 n y C18 C13 ML9 sing 243 n y C18 H18 ML9 sing 244 n n C9 C13 ML9 sing 245 n n C6 C5 ML9 doub 246 n y C5 C4 ML9 sing 247 n y C5 C10 ML9 sing 248 n n C21 C6 ML9 sing 249 n n N1 C6 ML9 sing 250 n y N3 C4 ML9 doub 251 n y C4 N7 ML9 sing 252 n n N17 C16 ML9 sing 253 n y C16 O19 ML9 sing 254 n n N12 C2 ML9 sing 255 n n N1 C2 ML9 doub 256 n y C2 N3 ML9 sing 257 n y C10 C9 ML9 doub 258 n n C10 H10 ML9 sing 259 n n C9 C8 ML9 sing 260 n n N7 C8 ML9 sing 261 n n C8 O11 ML9 doub 262 n n C23 C22 ML9 sing 263 n n C23 C24 ML9 sing 264 n n C23 H23 ML9 sing 265 n n C23 H23A ML9 sing 266 n n C22 C27 ML9 sing 267 n n C27 C26 ML9 sing 268 n n C27 H27 ML9 sing 269 n n C27 H27A ML9 sing 270 n n C24 C25 ML9 sing 271 n n C24 H24 ML9 sing 272 n n C24 H24A ML9 sing 273 n n C25 C26 ML9 sing 274 n n C26 H26 ML9 sing 275 n n C26 H26A ML9 sing 276 n n N7 C22 ML9 sing 277 n n C22 H22 ML9 sing 278 n n C25 O28 ML9 sing 279 n n C25 H25 ML9 sing 280 n n C21 H21 ML9 sing 281 n n C21 H21A ML9 sing 282 n n C21 H21B ML9 sing 283 n n C20 O19 ML9 sing 284 n n C20 H20 ML9 sing 285 n n C20 H20A ML9 sing 286 n n C20 H20B ML9 sing 287 n n O31 C30 ML9 sing 288 n n C29 C30 ML9 sing 289 n n C30 H30 ML9 sing 290 n n C30 H30A ML9 sing 291 n n O28 C29 ML9 sing 292 n n C29 H29 ML9 sing 293 n n C29 H29A ML9 sing 294 n n N12 HN12 ML9 sing 295 n n N12 HN1A ML9 sing 296 n n O31 HO31 ML9 sing 297 n n # _atom_sites.entry_id 3ML9 _atom_sites.fract_transf_matrix[1][1] 0.006948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000665 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ML9 A 1 9999 9999 ML9 ML9 . C 3 HOH A 1 1 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 ML9 . . . B 2 42.136 14.048 32.823 1 49.95 ? C14 ML9 9999 A 1 HETATM 2 C C15 ML9 . . . B 2 40.877 13.752 33.355 1 51 ? C15 ML9 9999 A 1 HETATM 3 C C18 ML9 . . . B 2 41.427 13.258 30.663 1 47.76 ? C18 ML9 9999 A 1 HETATM 4 C C13 ML9 . . . B 2 42.472 13.818 31.455 1 48.48 ? C13 ML9 9999 A 1 HETATM 5 C C5 ML9 . . . B 2 45.795 13.594 29.525 1 44.07 ? C5 ML9 9999 A 1 HETATM 6 C C6 ML9 . . . B 2 46.443 12.758 28.598 1 43.86 ? C6 ML9 9999 A 1 HETATM 7 C C4 ML9 . . . B 2 46.52 14.727 29.932 1 44.61 ? C4 ML9 9999 A 1 HETATM 8 C C16 ML9 . . . B 2 39.924 13.211 32.499 1 51.77 ? C16 ML9 9999 A 1 HETATM 9 C C2 ML9 . . . B 2 48.339 14.123 28.574 1 42.58 ? C2 ML9 9999 A 1 HETATM 10 C C10 ML9 . . . B 2 44.453 13.345 30.059 1 44.05 ? C10 ML9 9999 A 1 HETATM 11 C C9 ML9 . . . B 2 43.849 14.159 30.94 1 45.97 ? C9 ML9 9999 A 1 HETATM 12 C C8 ML9 . . . B 2 44.595 15.408 31.397 1 46.84 ? C8 ML9 9999 A 1 HETATM 13 C C23 ML9 . . . B 2 45.925 18.19 30.982 1 54.94 ? C23 ML9 9999 A 1 HETATM 14 C C27 ML9 . . . B 2 47.111 16.774 32.806 1 56.82 ? C27 ML9 9999 A 1 HETATM 15 C C24 ML9 . . . B 2 46.713 19.42 31.447 1 59.2 ? C24 ML9 9999 A 1 HETATM 16 C C26 ML9 . . . B 2 47.896 18.033 33.224 1 60.36 ? C26 ML9 9999 A 1 HETATM 17 C C22 ML9 . . . B 2 46.696 16.863 31.299 1 53.95 ? C22 ML9 9999 A 1 HETATM 18 C C25 ML9 . . . B 2 47.062 19.307 32.954 1 61.82 ? C25 ML9 9999 A 1 HETATM 19 C C21 ML9 . . . B 2 45.815 11.516 28.044 1 44.63 ? C21 ML9 9999 A 1 HETATM 20 C C20 ML9 . . . B 2 37.709 12.385 32.249 1 56.32 ? C20 ML9 9999 A 1 HETATM 21 C C30 ML9 . . . B 2 47.905 22.573 34.479 1 70.87 ? C30 ML9 9999 A 1 HETATM 22 C C29 ML9 . . . B 2 47.037 21.366 34.18 1 68.07 ? C29 ML9 9999 A 1 HETATM 23 N N17 ML9 . . . B 2 40.174 12.954 31.154 1 49.08 ? N17 ML9 9999 A 1 HETATM 24 N N1 ML9 . . . B 2 47.7 13.015 28.13 1 43.97 ? N1 ML9 9999 A 1 HETATM 25 N N3 ML9 . . . B 2 47.78 14.977 29.456 1 42.46 ? N3 ML9 9999 A 1 HETATM 26 N N7 ML9 . . . B 2 45.905 15.637 30.873 1 47.48 ? N7 ML9 9999 A 1 HETATM 27 N N12 ML9 . . . B 2 49.619 14.393 28.104 1 42.23 ? N12 ML9 9999 A 1 HETATM 28 O O11 ML9 . . . B 2 44.046 16.177 32.207 1 46.29 ? O11 ML9 9999 A 1 HETATM 29 O O31 ML9 . . . B 2 48.042 23.348 33.288 1 73.41 ? O31 ML9 9999 A 1 HETATM 30 O O19 ML9 . . . B 2 38.695 12.942 33.104 1 53.48 ? O19 ML9 9999 A 1 HETATM 31 O O28 ML9 . . . B 2 47.782 20.491 33.323 1 65.98 ? O28 ML9 9999 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #