data_3MLE # _model_server_result.job_id DgjQovC3Jxn74y1SC8wrUg _model_server_result.datetime_utc '2025-04-26 22:11:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":224}' # _entry.id 3MLE # _exptl.entry_id 3MLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 159.226 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-aminooctanoic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MLE _cell.length_a 79.773 _cell.length_b 131.905 _cell.length_c 133.099 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,H,I,J,K,L,S,T,U,V,W,MA,OA 1 1 B,D,M,N,O,P,Q,R,X,Y,Z,AA,BA,NA,PA 2 1 E,F,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,QA,RA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 Q N N ? 6 V N N ? 6 AA N N ? 6 FA N N ? 6 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 36 A THR 14 1_555 H MG MG . A MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc2 A OD2 ASP 72 A ASP 50 1_555 H MG MG . A MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 A OE2 GLU 138 A GLU 116 1_555 H MG MG . A MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 G O2 PO4 . A PO4 221 1_555 H MG MG . A MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc5 H MG MG . A MG 222 1_555 L O2B ADP . A ADP 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc6 B OG1 THR 36 B THR 14 1_555 N MG MG . B MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 B OD2 ASP 72 B ASP 50 1_555 N MG MG . B MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc8 B OE2 GLU 138 B GLU 116 1_555 N MG MG . B MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc9 M O2 PO4 . B PO4 221 1_555 N MG MG . B MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc10 N MG MG . B MG 222 1_555 P O3 PO4 . B PO4 224 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.161 ? metalc ? metalc11 N MG MG . B MG 222 1_555 R O2B ADP . B ADP 226 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.026 ? metalc ? metalc12 C OG1 THR 36 C THR 14 1_555 T MG MG . C MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc13 C OD2 ASP 72 C ASP 50 1_555 T MG MG . C MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc14 C OE2 GLU 138 C GLU 116 1_555 T MG MG . C MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc15 S O2 PO4 . C PO4 221 1_555 T MG MG . C MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc16 T MG MG . C MG 222 1_555 W O2B ADP . C ADP 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc17 D OG1 THR 36 D THR 14 1_555 Y MG MG . D MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc18 D OD2 ASP 72 D ASP 50 1_555 Y MG MG . D MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc19 D OE2 GLU 138 D GLU 116 1_555 Y MG MG . D MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc20 X O2 PO4 . D PO4 221 1_555 Y MG MG . D MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc21 Y MG MG . D MG 222 1_555 Z O2 PO4 . D PO4 223 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.979 ? metalc ? metalc22 Y MG MG . D MG 222 1_555 BA O2B ADP . D ADP 225 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.976 ? metalc ? metalc23 E OG1 THR 36 E THR 14 1_555 DA MG MG . E MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc24 E OD2 ASP 72 E ASP 50 1_555 DA MG MG . E MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc25 E OE2 GLU 138 E GLU 116 1_555 DA MG MG . E MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc26 CA O2 PO4 . E PO4 221 1_555 DA MG MG . E MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc27 DA MG MG . E MG 222 1_555 EA O2B ADP . E ADP 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc28 DA MG MG . E MG 222 1_555 QA O HOH . E HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc29 F OG1 THR 36 F THR 14 1_555 HA MG MG . F MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc30 F OD2 ASP 72 F ASP 50 1_555 HA MG MG . F MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc31 F OE2 GLU 138 F GLU 116 1_555 HA MG MG . F MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc32 GA O2 PO4 . F PO4 221 1_555 HA MG MG . F MG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc33 HA MG MG . F MG 222 1_555 LA O2B ADP . F ADP 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C8 H17 N O2' _chem_comp.formula_weight 159.226 _chem_comp.id 8AC _chem_comp.mon_nstd_flag . _chem_comp.name '8-aminooctanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '8-aminocaprylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD NAA 8AC sing 1 n n NAA HNAA 8AC sing 2 n n NAA HNAB 8AC sing 3 n n OAB CAK 8AC doub 4 n n CAK OAC 8AC sing 5 n n OAC HOAC 8AC sing 6 n n CAE CAD 8AC sing 7 n n CAD HAD 8AC sing 8 n n CAD HADA 8AC sing 9 n n CAE CAF 8AC sing 10 n n CAE HAE 8AC sing 11 n n CAE HAEA 8AC sing 12 n n CAF CAG 8AC sing 13 n n CAF HAF 8AC sing 14 n n CAF HAFA 8AC sing 15 n n CAH CAG 8AC sing 16 n n CAG HAG 8AC sing 17 n n CAG HAGA 8AC sing 18 n n CAH CAI 8AC sing 19 n n CAH HAH 8AC sing 20 n n CAH HAHA 8AC sing 21 n n CAJ CAI 8AC sing 22 n n CAI HAI 8AC sing 23 n n CAI HAIA 8AC sing 24 n n CAK CAJ 8AC sing 25 n n CAJ HAJ 8AC sing 26 n n CAJ HAJA 8AC sing 27 n n # _atom_sites.entry_id 3MLE _atom_sites.fract_transf_matrix[1][1] 0.012536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 A 1 221 221 PO4 PO4 . H 3 MG A 1 222 222 MG MG . I 4 NO3 A 1 223 223 NO3 NO3 . J 5 CL A 1 224 224 CL CL . K 6 8AC A 1 225 225 8AC 8AC . L 7 ADP A 1 226 226 ADP ADP . M 2 PO4 B 1 221 221 PO4 PO4 . N 3 MG B 1 222 222 MG MG . O 4 NO3 B 1 223 223 NO3 NO3 . P 2 PO4 B 1 224 224 PO4 PO4 . Q 6 8AC B 1 225 225 8AC 8AC . R 7 ADP B 1 226 226 ADP ADP . S 2 PO4 C 1 221 221 PO4 PO4 . T 3 MG C 1 222 222 MG MG . U 5 CL C 1 223 223 CL CL . V 6 8AC C 1 224 224 8AC 8AC . W 7 ADP C 1 225 225 ADP ADP . X 2 PO4 D 1 221 221 PO4 PO4 . Y 3 MG D 1 222 222 MG MG . Z 2 PO4 D 1 223 223 PO4 PO4 . AA 6 8AC D 1 224 224 8AC 8AC . BA 7 ADP D 1 225 225 ADP ADP . CA 2 PO4 E 1 221 221 PO4 PO4 . DA 3 MG E 1 222 222 MG MG . EA 7 ADP E 1 223 223 ADP ADP . FA 6 8AC E 1 224 224 8AC 8AC . GA 2 PO4 F 1 221 221 PO4 PO4 . HA 3 MG F 1 222 222 MG MG . IA 4 NO3 F 1 223 223 NO3 NO3 . JA 5 CL F 1 224 224 CL CL . KA 6 8AC F 1 225 225 8AC 8AC . LA 7 ADP F 1 226 226 ADP ADP . MA 8 HOH A 1 227 227 HOH HOH . MA 8 HOH A 2 228 228 HOH HOH . MA 8 HOH A 3 229 229 HOH HOH . MA 8 HOH A 4 230 230 HOH HOH . MA 8 HOH A 5 231 231 HOH HOH . MA 8 HOH A 6 232 232 HOH HOH . MA 8 HOH A 7 233 233 HOH HOH . MA 8 HOH A 8 234 234 HOH HOH . MA 8 HOH A 9 235 235 HOH HOH . MA 8 HOH A 10 236 236 HOH HOH . MA 8 HOH A 11 237 237 HOH HOH . MA 8 HOH A 12 238 238 HOH HOH . MA 8 HOH A 13 239 239 HOH HOH . MA 8 HOH A 14 240 240 HOH HOH . MA 8 HOH A 15 241 241 HOH HOH . MA 8 HOH A 16 242 242 HOH HOH . MA 8 HOH A 17 243 243 HOH HOH . MA 8 HOH A 18 244 244 HOH HOH . MA 8 HOH A 19 245 245 HOH HOH . MA 8 HOH A 20 246 246 HOH HOH . MA 8 HOH A 21 247 247 HOH HOH . MA 8 HOH A 22 248 248 HOH HOH . MA 8 HOH A 23 249 249 HOH HOH . MA 8 HOH A 24 250 250 HOH HOH . NA 8 HOH B 1 227 227 HOH HOH . NA 8 HOH B 2 228 228 HOH HOH . NA 8 HOH B 3 229 229 HOH HOH . NA 8 HOH B 4 230 230 HOH HOH . NA 8 HOH B 5 231 231 HOH HOH . NA 8 HOH B 6 232 232 HOH HOH . NA 8 HOH B 7 233 233 HOH HOH . NA 8 HOH B 8 234 234 HOH HOH . NA 8 HOH B 9 235 235 HOH HOH . NA 8 HOH B 10 236 236 HOH HOH . NA 8 HOH B 11 237 237 HOH HOH . NA 8 HOH B 12 238 238 HOH HOH . NA 8 HOH B 13 239 239 HOH HOH . OA 8 HOH C 1 226 226 HOH HOH . OA 8 HOH C 2 227 227 HOH HOH . OA 8 HOH C 3 228 228 HOH HOH . OA 8 HOH C 4 229 229 HOH HOH . OA 8 HOH C 5 230 230 HOH HOH . OA 8 HOH C 6 231 231 HOH HOH . OA 8 HOH C 7 232 232 HOH HOH . OA 8 HOH C 8 233 233 HOH HOH . OA 8 HOH C 9 234 234 HOH HOH . OA 8 HOH C 10 235 235 HOH HOH . OA 8 HOH C 11 236 236 HOH HOH . OA 8 HOH C 12 237 237 HOH HOH . OA 8 HOH C 13 238 238 HOH HOH . OA 8 HOH C 14 239 239 HOH HOH . OA 8 HOH C 15 240 240 HOH HOH . OA 8 HOH C 16 241 241 HOH HOH . PA 8 HOH D 1 226 226 HOH HOH . PA 8 HOH D 2 227 227 HOH HOH . PA 8 HOH D 3 228 228 HOH HOH . PA 8 HOH D 4 229 229 HOH HOH . PA 8 HOH D 5 230 230 HOH HOH . PA 8 HOH D 6 231 231 HOH HOH . PA 8 HOH D 7 232 232 HOH HOH . PA 8 HOH D 8 233 233 HOH HOH . PA 8 HOH D 9 234 234 HOH HOH . QA 8 HOH E 1 225 225 HOH HOH . QA 8 HOH E 2 226 226 HOH HOH . QA 8 HOH E 3 227 227 HOH HOH . QA 8 HOH E 4 228 228 HOH HOH . QA 8 HOH E 5 229 229 HOH HOH . QA 8 HOH E 6 230 230 HOH HOH . QA 8 HOH E 7 231 231 HOH HOH . QA 8 HOH E 8 232 232 HOH HOH . QA 8 HOH E 9 233 233 HOH HOH . QA 8 HOH E 10 234 234 HOH HOH . QA 8 HOH E 11 235 235 HOH HOH . QA 8 HOH E 12 236 236 HOH HOH . QA 8 HOH E 13 237 237 HOH HOH . QA 8 HOH E 14 238 238 HOH HOH . QA 8 HOH E 15 239 239 HOH HOH . QA 8 HOH E 16 240 240 HOH HOH . RA 8 HOH F 1 227 227 HOH HOH . RA 8 HOH F 2 228 228 HOH HOH . RA 8 HOH F 3 229 229 HOH HOH . RA 8 HOH F 4 230 230 HOH HOH . RA 8 HOH F 5 231 231 HOH HOH . RA 8 HOH F 6 232 232 HOH HOH . RA 8 HOH F 7 233 233 HOH HOH . RA 8 HOH F 8 234 234 HOH HOH . RA 8 HOH F 9 235 235 HOH HOH . RA 8 HOH F 10 236 236 HOH HOH . RA 8 HOH F 11 237 237 HOH HOH . RA 8 HOH F 12 238 238 HOH HOH . RA 8 HOH F 13 239 239 HOH HOH . RA 8 HOH F 14 240 240 HOH HOH . RA 8 HOH F 15 241 241 HOH HOH . RA 8 HOH F 16 242 242 HOH HOH . RA 8 HOH F 17 243 243 HOH HOH . RA 8 HOH F 18 244 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA 8AC . . . V 6 -4.212 23.026 -37.894 1 28.88 ? NAA 8AC 224 C 1 HETATM 2 O OAB 8AC . . . V 6 -0.403 16.355 -31.839 1 48.95 ? OAB 8AC 224 C 1 HETATM 3 O OAC 8AC . . . V 6 -2.573 15.989 -31.371 1 46.31 ? OAC 8AC 224 C 1 HETATM 4 C CAD 8AC . . . V 6 -4.915 22.22 -36.866 1 30.72 ? CAD 8AC 224 C 1 HETATM 5 C CAE 8AC . . . V 6 -3.875 21.899 -35.758 1 31.04 ? CAE 8AC 224 C 1 HETATM 6 C CAF 8AC . . . V 6 -4.625 21.428 -34.503 1 36.15 ? CAF 8AC 224 C 1 HETATM 7 C CAG 8AC . . . V 6 -3.731 20.865 -33.371 1 39.66 ? CAG 8AC 224 C 1 HETATM 8 C CAH 8AC . . . V 6 -2.866 19.657 -33.79 1 42.9 ? CAH 8AC 224 C 1 HETATM 9 C CAI 8AC . . . V 6 -3.094 18.46 -32.858 1 44.83 ? CAI 8AC 224 C 1 HETATM 10 C CAJ 8AC . . . V 6 -1.887 18.223 -31.946 1 44.38 ? CAJ 8AC 224 C 1 HETATM 11 C CAK 8AC . . . V 6 -1.604 16.725 -31.713 1 46.06 ? CAK 8AC 224 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #