data_3MLH # _model_server_result.job_id djNKYrJQWopeOlCIgPzJhw _model_server_result.datetime_utc '2024-10-12 14:25:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mlh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":6}' # _entry.id 3MLH # _exptl.entry_id 3MLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.73 _cell.angle_gamma 90 _cell.entry_id 3MLH _cell.length_a 39.857 _cell.length_b 74.065 _cell.length_c 75.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 64 1_555 A SG CYS 33 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 56 A CYS 97 1_555 A SG CYS 102 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 21 B CYS 64 1_555 B SG CYS 33 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 56 B CYS 97 1_555 B SG CYS 102 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3MLH _atom_sites.fract_transf_matrix[1][1] 0.02509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002075 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1 1 GOL GOL . D 2 GOL A 1 2 2 GOL GOL . E 2 GOL A 1 3 3 GOL GOL . F 2 GOL A 1 6 6 GOL GOL . G 2 GOL B 1 4 4 GOL GOL . H 2 GOL B 1 5 5 GOL GOL . I 3 HOH A 1 4 4 HOH HOH . I 3 HOH A 2 7 7 HOH HOH . I 3 HOH A 3 8 8 HOH HOH . I 3 HOH A 4 14 14 HOH HOH . I 3 HOH A 5 15 15 HOH HOH . I 3 HOH A 6 16 16 HOH HOH . I 3 HOH A 7 18 18 HOH HOH . I 3 HOH A 8 19 19 HOH HOH . I 3 HOH A 9 20 20 HOH HOH . I 3 HOH A 10 21 21 HOH HOH . I 3 HOH A 11 22 22 HOH HOH . I 3 HOH A 12 23 23 HOH HOH . I 3 HOH A 13 24 24 HOH HOH . I 3 HOH A 14 25 25 HOH HOH . I 3 HOH A 15 26 26 HOH HOH . I 3 HOH A 16 27 27 HOH HOH . I 3 HOH A 17 28 28 HOH HOH . I 3 HOH A 18 32 32 HOH HOH . I 3 HOH A 19 33 33 HOH HOH . I 3 HOH A 20 34 34 HOH HOH . I 3 HOH A 21 35 35 HOH HOH . I 3 HOH A 22 37 37 HOH HOH . I 3 HOH A 23 273 1 HOH HOH . I 3 HOH A 24 274 2 HOH HOH . I 3 HOH A 25 275 3 HOH HOH . I 3 HOH A 26 276 6 HOH HOH . I 3 HOH A 27 277 67 HOH HOH . I 3 HOH A 28 278 68 HOH HOH . I 3 HOH A 29 279 69 HOH HOH . I 3 HOH A 30 280 72 HOH HOH . I 3 HOH A 31 281 73 HOH HOH . I 3 HOH A 32 282 74 HOH HOH . I 3 HOH A 33 283 75 HOH HOH . I 3 HOH A 34 284 81 HOH HOH . I 3 HOH A 35 285 82 HOH HOH . I 3 HOH A 36 286 83 HOH HOH . I 3 HOH A 37 287 84 HOH HOH . I 3 HOH A 38 288 85 HOH HOH . I 3 HOH A 39 289 86 HOH HOH . I 3 HOH A 40 290 89 HOH HOH . I 3 HOH A 41 291 90 HOH HOH . I 3 HOH A 42 292 92 HOH HOH . I 3 HOH A 43 293 93 HOH HOH . I 3 HOH A 44 294 94 HOH HOH . I 3 HOH A 45 295 95 HOH HOH . I 3 HOH A 46 296 96 HOH HOH . I 3 HOH A 47 297 97 HOH HOH . I 3 HOH A 48 298 98 HOH HOH . I 3 HOH A 49 299 107 HOH HOH . I 3 HOH A 50 300 113 HOH HOH . I 3 HOH A 51 301 114 HOH HOH . I 3 HOH A 52 302 115 HOH HOH . I 3 HOH A 53 303 126 HOH HOH . I 3 HOH A 54 304 127 HOH HOH . I 3 HOH A 55 305 128 HOH HOH . I 3 HOH A 56 306 129 HOH HOH . I 3 HOH A 57 307 130 HOH HOH . I 3 HOH A 58 308 131 HOH HOH . I 3 HOH A 59 309 132 HOH HOH . I 3 HOH A 60 310 133 HOH HOH . I 3 HOH A 61 311 134 HOH HOH . I 3 HOH A 62 312 135 HOH HOH . I 3 HOH A 63 313 136 HOH HOH . I 3 HOH A 64 314 137 HOH HOH . I 3 HOH A 65 315 138 HOH HOH . I 3 HOH A 66 316 139 HOH HOH . I 3 HOH A 67 317 141 HOH HOH . I 3 HOH A 68 318 142 HOH HOH . I 3 HOH A 69 319 143 HOH HOH . I 3 HOH A 70 320 144 HOH HOH . I 3 HOH A 71 321 145 HOH HOH . I 3 HOH A 72 322 146 HOH HOH . I 3 HOH A 73 323 147 HOH HOH . I 3 HOH A 74 324 148 HOH HOH . I 3 HOH A 75 325 149 HOH HOH . I 3 HOH A 76 326 151 HOH HOH . I 3 HOH A 77 327 152 HOH HOH . I 3 HOH A 78 328 155 HOH HOH . I 3 HOH A 79 329 156 HOH HOH . I 3 HOH A 80 330 157 HOH HOH . I 3 HOH A 81 331 158 HOH HOH . I 3 HOH A 82 332 169 HOH HOH . I 3 HOH A 83 333 171 HOH HOH . I 3 HOH A 84 334 172 HOH HOH . I 3 HOH A 85 335 173 HOH HOH . I 3 HOH A 86 336 176 HOH HOH . I 3 HOH A 87 337 177 HOH HOH . I 3 HOH A 88 338 178 HOH HOH . I 3 HOH A 89 339 179 HOH HOH . I 3 HOH A 90 340 181 HOH HOH . I 3 HOH A 91 341 182 HOH HOH . I 3 HOH A 92 342 183 HOH HOH . I 3 HOH A 93 343 184 HOH HOH . I 3 HOH A 94 344 187 HOH HOH . I 3 HOH A 95 345 189 HOH HOH . J 3 HOH B 1 9 9 HOH HOH . J 3 HOH B 2 10 10 HOH HOH . J 3 HOH B 3 11 11 HOH HOH . J 3 HOH B 4 12 12 HOH HOH . J 3 HOH B 5 13 13 HOH HOH . J 3 HOH B 6 17 17 HOH HOH . J 3 HOH B 7 29 29 HOH HOH . J 3 HOH B 8 30 30 HOH HOH . J 3 HOH B 9 31 31 HOH HOH . J 3 HOH B 10 36 36 HOH HOH . J 3 HOH B 11 38 38 HOH HOH . J 3 HOH B 12 39 39 HOH HOH . J 3 HOH B 13 40 40 HOH HOH . J 3 HOH B 14 41 41 HOH HOH . J 3 HOH B 15 42 42 HOH HOH . J 3 HOH B 16 43 43 HOH HOH . J 3 HOH B 17 91 91 HOH HOH . J 3 HOH B 18 272 5 HOH HOH . J 3 HOH B 19 273 44 HOH HOH . J 3 HOH B 20 274 45 HOH HOH . J 3 HOH B 21 275 46 HOH HOH . J 3 HOH B 22 276 47 HOH HOH . J 3 HOH B 23 277 48 HOH HOH . J 3 HOH B 24 278 49 HOH HOH . J 3 HOH B 25 279 50 HOH HOH . J 3 HOH B 26 280 51 HOH HOH . J 3 HOH B 27 281 52 HOH HOH . J 3 HOH B 28 282 53 HOH HOH . J 3 HOH B 29 283 54 HOH HOH . J 3 HOH B 30 284 55 HOH HOH . J 3 HOH B 31 285 56 HOH HOH . J 3 HOH B 32 286 57 HOH HOH . J 3 HOH B 33 287 58 HOH HOH . J 3 HOH B 34 288 59 HOH HOH . J 3 HOH B 35 289 60 HOH HOH . J 3 HOH B 36 290 61 HOH HOH . J 3 HOH B 37 291 62 HOH HOH . J 3 HOH B 38 292 63 HOH HOH . J 3 HOH B 39 293 64 HOH HOH . J 3 HOH B 40 294 65 HOH HOH . J 3 HOH B 41 295 66 HOH HOH . J 3 HOH B 42 296 70 HOH HOH . J 3 HOH B 43 297 71 HOH HOH . J 3 HOH B 44 298 76 HOH HOH . J 3 HOH B 45 299 77 HOH HOH . J 3 HOH B 46 300 78 HOH HOH . J 3 HOH B 47 301 79 HOH HOH . J 3 HOH B 48 302 80 HOH HOH . J 3 HOH B 49 303 87 HOH HOH . J 3 HOH B 50 304 88 HOH HOH . J 3 HOH B 51 305 99 HOH HOH . J 3 HOH B 52 306 100 HOH HOH . J 3 HOH B 53 307 101 HOH HOH . J 3 HOH B 54 308 102 HOH HOH . J 3 HOH B 55 309 103 HOH HOH . J 3 HOH B 56 310 104 HOH HOH . J 3 HOH B 57 311 105 HOH HOH . J 3 HOH B 58 312 106 HOH HOH . J 3 HOH B 59 313 108 HOH HOH . J 3 HOH B 60 314 109 HOH HOH . J 3 HOH B 61 315 110 HOH HOH . J 3 HOH B 62 316 111 HOH HOH . J 3 HOH B 63 317 112 HOH HOH . J 3 HOH B 64 318 116 HOH HOH . J 3 HOH B 65 319 117 HOH HOH . J 3 HOH B 66 320 118 HOH HOH . J 3 HOH B 67 321 119 HOH HOH . J 3 HOH B 68 322 120 HOH HOH . J 3 HOH B 69 323 121 HOH HOH . J 3 HOH B 70 324 122 HOH HOH . J 3 HOH B 71 325 123 HOH HOH . J 3 HOH B 72 326 124 HOH HOH . J 3 HOH B 73 327 125 HOH HOH . J 3 HOH B 74 328 140 HOH HOH . J 3 HOH B 75 329 150 HOH HOH . J 3 HOH B 76 330 153 HOH HOH . J 3 HOH B 77 331 154 HOH HOH . J 3 HOH B 78 332 159 HOH HOH . J 3 HOH B 79 333 160 HOH HOH . J 3 HOH B 80 334 161 HOH HOH . J 3 HOH B 81 335 162 HOH HOH . J 3 HOH B 82 336 163 HOH HOH . J 3 HOH B 83 337 164 HOH HOH . J 3 HOH B 84 338 165 HOH HOH . J 3 HOH B 85 339 166 HOH HOH . J 3 HOH B 86 340 167 HOH HOH . J 3 HOH B 87 341 168 HOH HOH . J 3 HOH B 88 342 170 HOH HOH . J 3 HOH B 89 343 174 HOH HOH . J 3 HOH B 90 344 175 HOH HOH . J 3 HOH B 91 345 180 HOH HOH . J 3 HOH B 92 346 185 HOH HOH . J 3 HOH B 93 347 186 HOH HOH . J 3 HOH B 94 348 188 HOH HOH . J 3 HOH B 95 349 190 HOH HOH . J 3 HOH B 96 350 191 HOH HOH . J 3 HOH B 97 351 192 HOH HOH . J 3 HOH B 98 352 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 11.746 3.788 14.638 1 36.97 ? C1 GOL 6 A 1 HETATM 2 O O1 GOL . . . F 2 11.132 3.418 13.415 1 35.37 ? O1 GOL 6 A 1 HETATM 3 C C2 GOL . . . F 2 13.263 3.596 14.55 1 37.18 ? C2 GOL 6 A 1 HETATM 4 O O2 GOL . . . F 2 13.703 2.629 15.478 1 36.48 ? O2 GOL 6 A 1 HETATM 5 C C3 GOL . . . F 2 13.973 4.905 14.875 1 37.44 ? C3 GOL 6 A 1 HETATM 6 O O3 GOL . . . F 2 13.759 5.822 13.829 1 37.92 ? O3 GOL 6 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #