data_3MLJ
#
_model_server_result.job_id            dfdUbwMswuN4_YzSpr6X4A 
_model_server_result.datetime_utc      '2024-11-04 23:15:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mlj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":3}' 
#
_entry.id    3MLJ 
#
_exptl.entry_id    3MLJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3MLJ 
_cell.length_a            69.226 
_cell.length_b            68.86 
_cell.length_c            81.744 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MLJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 I N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 47 1_555 A SG CYS 144 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? 
disulf ? disulf2 A SG CYS 39 A CYS 81 1_555 A SG CYS 84 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 72 A CYS 114 1_555 A SG CYS 89 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 185 A CYS 227 1_555 A SG CYS 292 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 251 A CYS 293 1_555 A SG CYS 273 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc1 E O CMO . A CMO 1 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc2 F O CMO . A CMO 2 1_555 D NI NI . A NI 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc3 A ND1 HIS 65 A HIS 107 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc4 A ND1 HIS 66 A HIS 108 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc5 A ND1 HIS 130 A HIS 172 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc6 A NE2 HIS 193 A HIS 235 1_555 D NI NI . A NI 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc7 A NE2 HIS 200 A HIS 242 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc8 A NE2 HIS 202 A HIS 244 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc9 A SD MET 272 A MET 314 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc10 D NI NI . A NI 359 1_555 K O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc11 D NI NI . A NI 359 1_555 K O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc12 D NI NI . A NI 359 1_555 K O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 136 n n 
C1 C2 GOL sing 137 n n 
C1 H11 GOL sing 138 n n 
C1 H12 GOL sing 139 n n 
O1 HO1 GOL sing 140 n n 
C2 O2 GOL sing 141 n n 
C2 C3 GOL sing 142 n n 
C2 H2 GOL sing 143 n n 
O2 HO2 GOL sing 144 n n 
C3 O3 GOL sing 145 n n 
C3 H31 GOL sing 146 n n 
C3 H32 GOL sing 147 n n 
O3 HO3 GOL sing 148 n n 
#
_atom_sites.entry_id                     3MLJ 
_atom_sites.fract_transf_matrix[1][1]    0.014445 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012233 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 357 357 CU CU . 
C 2 CU A 1 358 358 CU CU . 
D 3 NI A 1 359 359 NI NI . 
E 4 CMO A 1 1 1 CMO CMO . 
F 4 CMO A 1 2 2 CMO CMO . 
G 5 ACT A 1 360 1 ACT ACT . 
H 6 GOL A 1 361 1 GOL GOL . 
I 6 GOL A 1 362 2 GOL GOL . 
J 6 GOL A 1 3 3 GOL GOL . 
K 7 HOH A 1 4 4 HOH HOH . 
K 7 HOH A 2 5 5 HOH HOH . 
K 7 HOH A 3 6 6 HOH HOH . 
K 7 HOH A 4 7 7 HOH HOH . 
K 7 HOH A 5 8 8 HOH HOH . 
K 7 HOH A 6 9 9 HOH HOH . 
K 7 HOH A 7 10 10 HOH HOH . 
K 7 HOH A 8 11 11 HOH HOH . 
K 7 HOH A 9 12 12 HOH HOH . 
K 7 HOH A 10 13 13 HOH HOH . 
K 7 HOH A 11 14 14 HOH HOH . 
K 7 HOH A 12 15 15 HOH HOH . 
K 7 HOH A 13 16 16 HOH HOH . 
K 7 HOH A 14 17 17 HOH HOH . 
K 7 HOH A 15 18 18 HOH HOH . 
K 7 HOH A 16 19 19 HOH HOH . 
K 7 HOH A 17 20 20 HOH HOH . 
K 7 HOH A 18 21 21 HOH HOH . 
K 7 HOH A 19 22 22 HOH HOH . 
K 7 HOH A 20 23 23 HOH HOH . 
K 7 HOH A 21 24 24 HOH HOH . 
K 7 HOH A 22 25 25 HOH HOH . 
K 7 HOH A 23 26 26 HOH HOH . 
K 7 HOH A 24 27 27 HOH HOH . 
K 7 HOH A 25 28 28 HOH HOH . 
K 7 HOH A 26 29 29 HOH HOH . 
K 7 HOH A 27 30 30 HOH HOH . 
K 7 HOH A 28 31 31 HOH HOH . 
K 7 HOH A 29 32 32 HOH HOH . 
K 7 HOH A 30 33 33 HOH HOH . 
K 7 HOH A 31 34 34 HOH HOH . 
K 7 HOH A 32 35 35 HOH HOH . 
K 7 HOH A 33 36 36 HOH HOH . 
K 7 HOH A 34 37 37 HOH HOH . 
K 7 HOH A 35 38 38 HOH HOH . 
K 7 HOH A 36 39 39 HOH HOH . 
K 7 HOH A 37 40 40 HOH HOH . 
K 7 HOH A 38 41 41 HOH HOH . 
K 7 HOH A 39 42 42 HOH HOH . 
K 7 HOH A 40 363 1 HOH HOH . 
K 7 HOH A 41 364 2 HOH HOH . 
K 7 HOH A 42 365 3 HOH HOH . 
K 7 HOH A 43 366 43 HOH HOH . 
K 7 HOH A 44 367 44 HOH HOH . 
K 7 HOH A 45 368 45 HOH HOH . 
K 7 HOH A 46 369 46 HOH HOH . 
K 7 HOH A 47 370 47 HOH HOH . 
K 7 HOH A 48 371 48 HOH HOH . 
K 7 HOH A 49 372 49 HOH HOH . 
K 7 HOH A 50 373 50 HOH HOH . 
K 7 HOH A 51 374 51 HOH HOH . 
K 7 HOH A 52 375 52 HOH HOH . 
K 7 HOH A 53 376 53 HOH HOH . 
K 7 HOH A 54 377 54 HOH HOH . 
K 7 HOH A 55 378 55 HOH HOH . 
K 7 HOH A 56 379 56 HOH HOH . 
K 7 HOH A 57 380 57 HOH HOH . 
K 7 HOH A 58 381 58 HOH HOH . 
K 7 HOH A 59 382 59 HOH HOH . 
K 7 HOH A 60 383 60 HOH HOH . 
K 7 HOH A 61 384 61 HOH HOH . 
K 7 HOH A 62 385 62 HOH HOH . 
K 7 HOH A 63 386 63 HOH HOH . 
K 7 HOH A 64 387 64 HOH HOH . 
K 7 HOH A 65 388 65 HOH HOH . 
K 7 HOH A 66 389 66 HOH HOH . 
K 7 HOH A 67 390 67 HOH HOH . 
K 7 HOH A 68 391 68 HOH HOH . 
K 7 HOH A 69 392 69 HOH HOH . 
K 7 HOH A 70 393 70 HOH HOH . 
K 7 HOH A 71 394 71 HOH HOH . 
K 7 HOH A 72 395 72 HOH HOH . 
K 7 HOH A 73 396 73 HOH HOH . 
K 7 HOH A 74 397 74 HOH HOH . 
K 7 HOH A 75 398 75 HOH HOH . 
K 7 HOH A 76 399 76 HOH HOH . 
K 7 HOH A 77 400 77 HOH HOH . 
K 7 HOH A 78 401 78 HOH HOH . 
K 7 HOH A 79 402 79 HOH HOH . 
K 7 HOH A 80 403 80 HOH HOH . 
K 7 HOH A 81 404 81 HOH HOH . 
K 7 HOH A 82 405 82 HOH HOH . 
K 7 HOH A 83 406 83 HOH HOH . 
K 7 HOH A 84 407 84 HOH HOH . 
K 7 HOH A 85 408 85 HOH HOH . 
K 7 HOH A 86 409 86 HOH HOH . 
K 7 HOH A 87 410 87 HOH HOH . 
K 7 HOH A 88 411 88 HOH HOH . 
K 7 HOH A 89 412 89 HOH HOH . 
K 7 HOH A 90 413 90 HOH HOH . 
K 7 HOH A 91 414 91 HOH HOH . 
K 7 HOH A 92 415 92 HOH HOH . 
K 7 HOH A 93 416 93 HOH HOH . 
K 7 HOH A 94 417 94 HOH HOH . 
K 7 HOH A 95 418 95 HOH HOH . 
K 7 HOH A 96 419 96 HOH HOH . 
K 7 HOH A 97 420 97 HOH HOH . 
K 7 HOH A 98 421 98 HOH HOH . 
K 7 HOH A 99 422 99 HOH HOH . 
K 7 HOH A 100 423 100 HOH HOH . 
K 7 HOH A 101 424 101 HOH HOH . 
K 7 HOH A 102 425 102 HOH HOH . 
K 7 HOH A 103 426 103 HOH HOH . 
K 7 HOH A 104 427 104 HOH HOH . 
K 7 HOH A 105 428 105 HOH HOH . 
K 7 HOH A 106 429 106 HOH HOH . 
K 7 HOH A 107 430 107 HOH HOH . 
K 7 HOH A 108 431 108 HOH HOH . 
K 7 HOH A 109 432 109 HOH HOH . 
K 7 HOH A 110 433 110 HOH HOH . 
K 7 HOH A 111 434 111 HOH HOH . 
K 7 HOH A 112 435 112 HOH HOH . 
K 7 HOH A 113 436 113 HOH HOH . 
K 7 HOH A 114 437 114 HOH HOH . 
K 7 HOH A 115 438 115 HOH HOH . 
K 7 HOH A 116 439 116 HOH HOH . 
K 7 HOH A 117 440 117 HOH HOH . 
K 7 HOH A 118 441 118 HOH HOH . 
K 7 HOH A 119 442 119 HOH HOH . 
K 7 HOH A 120 443 120 HOH HOH . 
K 7 HOH A 121 444 121 HOH HOH . 
K 7 HOH A 122 445 122 HOH HOH . 
K 7 HOH A 123 446 123 HOH HOH . 
K 7 HOH A 124 447 124 HOH HOH . 
K 7 HOH A 125 448 125 HOH HOH . 
K 7 HOH A 126 449 126 HOH HOH . 
K 7 HOH A 127 450 127 HOH HOH . 
K 7 HOH A 128 451 128 HOH HOH . 
K 7 HOH A 129 452 129 HOH HOH . 
K 7 HOH A 130 453 130 HOH HOH . 
K 7 HOH A 131 454 131 HOH HOH . 
K 7 HOH A 132 455 132 HOH HOH . 
K 7 HOH A 133 456 133 HOH HOH . 
K 7 HOH A 134 457 134 HOH HOH . 
K 7 HOH A 135 458 135 HOH HOH . 
K 7 HOH A 136 459 136 HOH HOH . 
K 7 HOH A 137 460 137 HOH HOH . 
K 7 HOH A 138 461 138 HOH HOH . 
K 7 HOH A 139 462 139 HOH HOH . 
K 7 HOH A 140 463 140 HOH HOH . 
K 7 HOH A 141 464 141 HOH HOH . 
K 7 HOH A 142 465 142 HOH HOH . 
K 7 HOH A 143 466 143 HOH HOH . 
K 7 HOH A 144 467 144 HOH HOH . 
K 7 HOH A 145 468 145 HOH HOH . 
K 7 HOH A 146 469 146 HOH HOH . 
K 7 HOH A 147 470 147 HOH HOH . 
K 7 HOH A 148 471 148 HOH HOH . 
K 7 HOH A 149 472 149 HOH HOH . 
K 7 HOH A 150 473 150 HOH HOH . 
K 7 HOH A 151 474 151 HOH HOH . 
K 7 HOH A 152 475 152 HOH HOH . 
K 7 HOH A 153 476 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 6 40.018 8.791 50.114 1 48.92 ? C1 GOL 3 A 1 
HETATM 2 O O1 GOL . . . J 6 40.058 7.559 50.808 1 48.34 ? O1 GOL 3 A 1 
HETATM 3 C C2 GOL . . . J 6 41.013 8.754 48.958 1 49.48 ? C2 GOL 3 A 1 
HETATM 4 O O2 GOL . . . J 6 40.332 8.683 47.725 1 46.85 ? O2 GOL 3 A 1 
HETATM 5 C C3 GOL . . . J 6 41.946 9.964 48.985 1 50.95 ? C3 GOL 3 A 1 
HETATM 6 O O3 GOL . . . J 6 42.784 9.933 47.842 1 52.12 ? O3 GOL 3 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#