data_3MM2 # _model_server_result.job_id SUQjAV9RyCvOTLBfeL0s-A _model_server_result.datetime_utc '2024-11-19 14:33:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 3MM2 # _exptl.entry_id 3MM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.8 _cell.angle_gamma 90 _cell.entry_id 3MM2 _cell.length_a 46.958 _cell.length_b 95.915 _cell.length_c 50.322 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 246 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.43 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 320 n n C1 O1 NAG sing 321 n n C1 O5 NAG sing 322 n n C1 H1 NAG sing 323 n n C2 C3 NAG sing 324 n n C2 N2 NAG sing 325 n n C2 H2 NAG sing 326 n n C3 C4 NAG sing 327 n n C3 O3 NAG sing 328 n n C3 H3 NAG sing 329 n n C4 C5 NAG sing 330 n n C4 O4 NAG sing 331 n n C4 H4 NAG sing 332 n n C5 C6 NAG sing 333 n n C5 O5 NAG sing 334 n n C5 H5 NAG sing 335 n n C6 O6 NAG sing 336 n n C6 H61 NAG sing 337 n n C6 H62 NAG sing 338 n n C7 C8 NAG sing 339 n n C7 N2 NAG sing 340 n n C7 O7 NAG doub 341 n n C8 H81 NAG sing 342 n n C8 H82 NAG sing 343 n n C8 H83 NAG sing 344 n n N2 HN2 NAG sing 345 n n O1 HO1 NAG sing 346 n n O3 HO3 NAG sing 347 n n O4 HO4 NAG sing 348 n n O6 HO6 NAG sing 349 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3MM2 _atom_sites.fract_transf_matrix[1][1] 0.021296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005229 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 NAG A 1 502 502 NAG NAG . D 4 CYN A 1 503 503 CYN CN . E 5 HOH A 1 1001 1001 HOH HOH . E 5 HOH A 2 1002 1002 HOH HOH . E 5 HOH A 3 1003 1003 HOH HOH . E 5 HOH A 4 1004 1004 HOH HOH . E 5 HOH A 5 1005 1005 HOH HOH . E 5 HOH A 6 1006 1006 HOH HOH . E 5 HOH A 7 1007 1007 HOH HOH . E 5 HOH A 8 1008 1008 HOH HOH . E 5 HOH A 9 1009 1009 HOH HOH . E 5 HOH A 10 1010 1010 HOH HOH . E 5 HOH A 11 1011 1011 HOH HOH . E 5 HOH A 12 1012 1012 HOH HOH . E 5 HOH A 13 1013 1013 HOH HOH . E 5 HOH A 14 1014 1014 HOH HOH . E 5 HOH A 15 1015 1015 HOH HOH . E 5 HOH A 16 1016 1016 HOH HOH . E 5 HOH A 17 1017 1017 HOH HOH . E 5 HOH A 18 1018 1018 HOH HOH . E 5 HOH A 19 1019 1019 HOH HOH . E 5 HOH A 20 1020 1020 HOH HOH . E 5 HOH A 21 1021 1021 HOH HOH . E 5 HOH A 22 1022 1022 HOH HOH . E 5 HOH A 23 1023 1023 HOH HOH . E 5 HOH A 24 1024 1024 HOH HOH . E 5 HOH A 25 1025 1025 HOH HOH . E 5 HOH A 26 1026 1026 HOH HOH . E 5 HOH A 27 1027 1027 HOH HOH . E 5 HOH A 28 1028 1028 HOH HOH . E 5 HOH A 29 1029 1029 HOH HOH . E 5 HOH A 30 1030 1030 HOH HOH . E 5 HOH A 31 1031 1031 HOH HOH . E 5 HOH A 32 1032 1032 HOH HOH . E 5 HOH A 33 1033 1033 HOH HOH . E 5 HOH A 34 1034 1034 HOH HOH . E 5 HOH A 35 1035 1035 HOH HOH . E 5 HOH A 36 1036 1036 HOH HOH . E 5 HOH A 37 1037 1037 HOH HOH . E 5 HOH A 38 1038 1038 HOH HOH . E 5 HOH A 39 1039 1039 HOH HOH . E 5 HOH A 40 1040 1040 HOH HOH . E 5 HOH A 41 1041 1041 HOH HOH . E 5 HOH A 42 1042 1042 HOH HOH . E 5 HOH A 43 1043 1043 HOH HOH . E 5 HOH A 44 1044 1044 HOH HOH . E 5 HOH A 45 1045 1045 HOH HOH . E 5 HOH A 46 1046 1046 HOH HOH . E 5 HOH A 47 1047 1047 HOH HOH . E 5 HOH A 48 1048 1048 HOH HOH . E 5 HOH A 49 1049 1049 HOH HOH . E 5 HOH A 50 1050 1050 HOH HOH . E 5 HOH A 51 1051 1051 HOH HOH . E 5 HOH A 52 1052 1052 HOH HOH . E 5 HOH A 53 1053 1053 HOH HOH . E 5 HOH A 54 1054 1054 HOH HOH . E 5 HOH A 55 1055 1055 HOH HOH . E 5 HOH A 56 1056 1056 HOH HOH . E 5 HOH A 57 1057 1057 HOH HOH . E 5 HOH A 58 1058 1058 HOH HOH . E 5 HOH A 59 1059 1059 HOH HOH . E 5 HOH A 60 1060 1060 HOH HOH . E 5 HOH A 61 1061 1061 HOH HOH . E 5 HOH A 62 1062 1062 HOH HOH . E 5 HOH A 63 1063 1063 HOH HOH . E 5 HOH A 64 1064 1064 HOH HOH . E 5 HOH A 65 1065 1065 HOH HOH . E 5 HOH A 66 1066 1066 HOH HOH . E 5 HOH A 67 1067 1067 HOH HOH . E 5 HOH A 68 1068 1068 HOH HOH . E 5 HOH A 69 1069 1069 HOH HOH . E 5 HOH A 70 1070 1070 HOH HOH . E 5 HOH A 71 1071 1071 HOH HOH . E 5 HOH A 72 1072 1072 HOH HOH . E 5 HOH A 73 1073 1073 HOH HOH . E 5 HOH A 74 1074 1074 HOH HOH . E 5 HOH A 75 1075 1075 HOH HOH . E 5 HOH A 76 1076 1076 HOH HOH . E 5 HOH A 77 1077 1077 HOH HOH . E 5 HOH A 78 1078 1078 HOH HOH . E 5 HOH A 79 1079 1079 HOH HOH . E 5 HOH A 80 1080 1080 HOH HOH . E 5 HOH A 81 1081 1081 HOH HOH . E 5 HOH A 82 1082 1082 HOH HOH . E 5 HOH A 83 1083 1083 HOH HOH . E 5 HOH A 84 1084 1084 HOH HOH . E 5 HOH A 85 1085 1085 HOH HOH . E 5 HOH A 86 1086 1086 HOH HOH . E 5 HOH A 87 1087 1087 HOH HOH . E 5 HOH A 88 1088 1088 HOH HOH . E 5 HOH A 89 1089 1089 HOH HOH . E 5 HOH A 90 1090 1090 HOH HOH . E 5 HOH A 91 1091 1091 HOH HOH . E 5 HOH A 92 1092 1092 HOH HOH . E 5 HOH A 93 1093 1093 HOH HOH . E 5 HOH A 94 1094 1094 HOH HOH . E 5 HOH A 95 1095 1095 HOH HOH . E 5 HOH A 96 1096 1096 HOH HOH . E 5 HOH A 97 1097 1097 HOH HOH . E 5 HOH A 98 1098 1098 HOH HOH . E 5 HOH A 99 1099 1099 HOH HOH . E 5 HOH A 100 1100 1100 HOH HOH . E 5 HOH A 101 1101 1101 HOH HOH . E 5 HOH A 102 1102 1102 HOH HOH . E 5 HOH A 103 1103 1103 HOH HOH . E 5 HOH A 104 1104 1104 HOH HOH . E 5 HOH A 105 1105 1105 HOH HOH . E 5 HOH A 106 1106 1106 HOH HOH . E 5 HOH A 107 1107 1107 HOH HOH . E 5 HOH A 108 1108 1108 HOH HOH . E 5 HOH A 109 1109 1109 HOH HOH . E 5 HOH A 110 1110 1110 HOH HOH . E 5 HOH A 111 1111 1111 HOH HOH . E 5 HOH A 112 1112 1112 HOH HOH . E 5 HOH A 113 1113 1113 HOH HOH . E 5 HOH A 114 1114 1114 HOH HOH . E 5 HOH A 115 1115 1115 HOH HOH . E 5 HOH A 116 1116 1116 HOH HOH . E 5 HOH A 117 1117 1117 HOH HOH . E 5 HOH A 118 1118 1118 HOH HOH . E 5 HOH A 119 1119 1119 HOH HOH . E 5 HOH A 120 1120 1120 HOH HOH . E 5 HOH A 121 1121 1121 HOH HOH . E 5 HOH A 122 1122 1122 HOH HOH . E 5 HOH A 123 1123 1123 HOH HOH . E 5 HOH A 124 1124 1124 HOH HOH . E 5 HOH A 125 1125 1125 HOH HOH . E 5 HOH A 126 1126 1126 HOH HOH . E 5 HOH A 127 1127 1127 HOH HOH . E 5 HOH A 128 1128 1128 HOH HOH . E 5 HOH A 129 1129 1129 HOH HOH . E 5 HOH A 130 1130 1130 HOH HOH . E 5 HOH A 131 1131 1131 HOH HOH . E 5 HOH A 132 1132 1132 HOH HOH . E 5 HOH A 133 1133 1133 HOH HOH . E 5 HOH A 134 1134 1134 HOH HOH . E 5 HOH A 135 1135 1135 HOH HOH . E 5 HOH A 136 1136 1136 HOH HOH . E 5 HOH A 137 1137 1137 HOH HOH . E 5 HOH A 138 1138 1138 HOH HOH . E 5 HOH A 139 1139 1139 HOH HOH . E 5 HOH A 140 1140 1140 HOH HOH . E 5 HOH A 141 1141 1141 HOH HOH . E 5 HOH A 142 1142 1142 HOH HOH . E 5 HOH A 143 1143 1143 HOH HOH . E 5 HOH A 144 1144 1144 HOH HOH . E 5 HOH A 145 1145 1145 HOH HOH . E 5 HOH A 146 1146 1146 HOH HOH . E 5 HOH A 147 1147 1147 HOH HOH . E 5 HOH A 148 1148 1148 HOH HOH . E 5 HOH A 149 1149 1149 HOH HOH . E 5 HOH A 150 1150 1150 HOH HOH . E 5 HOH A 151 1151 1151 HOH HOH . E 5 HOH A 152 1152 1152 HOH HOH . E 5 HOH A 153 1153 1153 HOH HOH . E 5 HOH A 154 1154 1154 HOH HOH . E 5 HOH A 155 1155 1155 HOH HOH . E 5 HOH A 156 1156 1156 HOH HOH . E 5 HOH A 157 1157 1157 HOH HOH . E 5 HOH A 158 1158 1158 HOH HOH . E 5 HOH A 159 1159 1159 HOH HOH . E 5 HOH A 160 1160 1160 HOH HOH . E 5 HOH A 161 1161 1161 HOH HOH . E 5 HOH A 162 1162 1162 HOH HOH . E 5 HOH A 163 1163 1163 HOH HOH . E 5 HOH A 164 1164 1164 HOH HOH . E 5 HOH A 165 1165 1165 HOH HOH . E 5 HOH A 166 1166 1166 HOH HOH . E 5 HOH A 167 1167 1167 HOH HOH . E 5 HOH A 168 1168 1168 HOH HOH . E 5 HOH A 169 1169 1169 HOH HOH . E 5 HOH A 170 1170 1170 HOH HOH . E 5 HOH A 171 1171 1171 HOH HOH . E 5 HOH A 172 1172 1172 HOH HOH . E 5 HOH A 173 1173 1173 HOH HOH . E 5 HOH A 174 1174 1174 HOH HOH . E 5 HOH A 175 1175 1175 HOH HOH . E 5 HOH A 176 1176 1176 HOH HOH . E 5 HOH A 177 1177 1177 HOH HOH . E 5 HOH A 178 1178 1178 HOH HOH . E 5 HOH A 179 1179 1179 HOH HOH . E 5 HOH A 180 1180 1180 HOH HOH . E 5 HOH A 181 1181 1181 HOH HOH . E 5 HOH A 182 1182 1182 HOH HOH . E 5 HOH A 183 1183 1183 HOH HOH . E 5 HOH A 184 1184 1184 HOH HOH . E 5 HOH A 185 1185 1185 HOH HOH . E 5 HOH A 186 1186 1186 HOH HOH . E 5 HOH A 187 1187 1187 HOH HOH . E 5 HOH A 188 1188 1188 HOH HOH . E 5 HOH A 189 1189 1189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -8.171 37.229 6.335 1 22.88 ? C1 NAG 502 A 1 HETATM 2 C C2 NAG . . . C 3 -7.954 38.728 6.134 1 25.74 ? C2 NAG 502 A 1 HETATM 3 C C3 NAG . . . C 3 -9.178 39.363 5.473 1 26.22 ? C3 NAG 502 A 1 HETATM 4 C C4 NAG . . . C 3 -9.612 38.583 4.226 1 26.02 ? C4 NAG 502 A 1 HETATM 5 C C5 NAG . . . C 3 -9.774 37.097 4.555 1 25.26 ? C5 NAG 502 A 1 HETATM 6 C C6 NAG . . . C 3 -10.077 36.255 3.32 1 25.5 ? C6 NAG 502 A 1 HETATM 7 C C7 NAG . . . C 3 -6.478 39.866 7.733 1 26.52 ? C7 NAG 502 A 1 HETATM 8 C C8 NAG . . . C 3 -6.376 40.495 9.091 1 26.77 ? C8 NAG 502 A 1 HETATM 9 N N2 NAG . . . C 3 -7.676 39.371 7.407 1 25.51 ? N2 NAG 502 A 1 HETATM 10 O O3 NAG . . . C 3 -8.895 40.71 5.145 1 27.22 ? O3 NAG 502 A 1 HETATM 11 O O4 NAG . . . C 3 -10.828 39.103 3.74 1 27.34 ? O4 NAG 502 A 1 HETATM 12 O O5 NAG . . . C 3 -8.569 36.625 5.116 1 24.77 ? O5 NAG 502 A 1 HETATM 13 O O6 NAG . . . C 3 -10.396 34.937 3.72 1 26.12 ? O6 NAG 502 A 1 HETATM 14 O O7 NAG . . . C 3 -5.487 39.831 6.998 1 26.37 ? O7 NAG 502 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #