data_3MMV # _model_server_result.job_id dVRBJD4Bu2-jfx0Wp2eXYg _model_server_result.datetime_utc '2024-11-28 21:49:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":800}' # _entry.id 3MMV # _exptl.entry_id 3MMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MMV _cell.length_a 125.51 _cell.length_b 125.51 _cell.length_c 56.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1B ATP . A ATP 800 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc2 D O2G ATP . A ATP 800 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3MMV _atom_sites.fract_transf_matrix[1][1] 0.007967 _atom_sites.fract_transf_matrix[1][2] 0.0046 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 901 901 CA CA . D 4 ATP A 1 800 800 ATP ATP . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 376 2 HOH HOH . E 5 HOH A 3 377 3 HOH HOH . E 5 HOH A 4 378 5 HOH HOH . E 5 HOH A 5 379 6 HOH HOH . E 5 HOH A 6 380 7 HOH HOH . E 5 HOH A 7 381 8 HOH HOH . E 5 HOH A 8 382 11 HOH HOH . E 5 HOH A 9 383 12 HOH HOH . E 5 HOH A 10 384 13 HOH HOH . E 5 HOH A 11 385 14 HOH HOH . E 5 HOH A 12 386 15 HOH HOH . E 5 HOH A 13 387 16 HOH HOH . E 5 HOH A 14 388 17 HOH HOH . E 5 HOH A 15 389 18 HOH HOH . E 5 HOH A 16 390 19 HOH HOH . E 5 HOH A 17 391 20 HOH HOH . E 5 HOH A 18 392 21 HOH HOH . E 5 HOH A 19 393 22 HOH HOH . E 5 HOH A 20 394 23 HOH HOH . E 5 HOH A 21 395 24 HOH HOH . E 5 HOH A 22 396 25 HOH HOH . E 5 HOH A 23 397 26 HOH HOH . E 5 HOH A 24 398 27 HOH HOH . E 5 HOH A 25 399 28 HOH HOH . E 5 HOH A 26 400 29 HOH HOH . E 5 HOH A 27 401 30 HOH HOH . F 5 HOH X 1 20 4 HOH HOH . F 5 HOH X 2 21 9 HOH HOH . F 5 HOH X 3 22 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 34.633 -31.656 -2.632 1 29.23 ? PG ATP 800 A 1 HETATM 2 O O1G ATP . . . D 4 33.542 -30.626 -2.891 1 27.56 ? O1G ATP 800 A 1 HETATM 3 O O2G ATP . . . D 4 35.233 -31.55 -1.238 1 28.82 ? O2G ATP 800 A 1 HETATM 4 O O3G ATP . . . D 4 34.437 -33.088 -3.065 1 25.6 ? O3G ATP 800 A 1 HETATM 5 P PB ATP . . . D 4 37.154 -31.529 -4.074 1 29.29 ? PB ATP 800 A 1 HETATM 6 O O1B ATP . . . D 4 37.796 -32.249 -2.923 1 25 ? O1B ATP 800 A 1 HETATM 7 O O2B ATP . . . D 4 37.14 -32.066 -5.485 1 27.45 ? O2B ATP 800 A 1 HETATM 8 O O3B ATP . . . D 4 35.657 -31.044 -3.724 1 29.27 ? O3B ATP 800 A 1 HETATM 9 P PA ATP . . . D 4 38.943 -29.365 -3.471 1 33.05 ? PA ATP 800 A 1 HETATM 10 O O1A ATP . . . D 4 38.643 -29.395 -1.998 1 33.76 ? O1A ATP 800 A 1 HETATM 11 O O2A ATP . . . D 4 40.266 -29.88 -3.958 1 36.61 ? O2A ATP 800 A 1 HETATM 12 O O3A ATP . . . D 4 37.798 -30.083 -4.326 1 32.25 ? O3A ATP 800 A 1 HETATM 13 O O5' ATP . . . D 4 38.709 -27.958 -4.154 1 34 ? O5' ATP 800 A 1 HETATM 14 C C5' ATP . . . D 4 38.604 -27.902 -5.583 1 35.58 ? C5' ATP 800 A 1 HETATM 15 C C4' ATP . . . D 4 37.846 -26.611 -5.836 1 37.16 ? C4' ATP 800 A 1 HETATM 16 O O4' ATP . . . D 4 38.557 -25.528 -5.245 1 37.05 ? O4' ATP 800 A 1 HETATM 17 C C3' ATP . . . D 4 37.589 -26.268 -7.282 1 38.09 ? C3' ATP 800 A 1 HETATM 18 O O3' ATP . . . D 4 36.217 -25.861 -7.276 1 39.99 ? O3' ATP 800 A 1 HETATM 19 C C2' ATP . . . D 4 38.371 -24.997 -7.514 1 38.54 ? C2' ATP 800 A 1 HETATM 20 O O2' ATP . . . D 4 37.711 -24.147 -8.48 1 36.63 ? O2' ATP 800 A 1 HETATM 21 C C1' ATP . . . D 4 38.525 -24.405 -6.103 1 38.24 ? C1' ATP 800 A 1 HETATM 22 N N9 ATP . . . D 4 39.821 -23.718 -5.964 1 38.17 ? N9 ATP 800 A 1 HETATM 23 C C8 ATP . . . D 4 41.019 -24.285 -6.207 1 38.77 ? C8 ATP 800 A 1 HETATM 24 N N7 ATP . . . D 4 42.022 -23.411 -6.027 1 39.13 ? N7 ATP 800 A 1 HETATM 25 C C5 ATP . . . D 4 41.44 -22.258 -5.664 1 40.24 ? C5 ATP 800 A 1 HETATM 26 C C6 ATP . . . D 4 41.935 -20.914 -5.324 1 41.23 ? C6 ATP 800 A 1 HETATM 27 N N6 ATP . . . D 4 43.273 -20.715 -5.349 1 42.6 ? N6 ATP 800 A 1 HETATM 28 N N1 ATP . . . D 4 41.031 -19.957 -4.986 1 41.46 ? N1 ATP 800 A 1 HETATM 29 C C2 ATP . . . D 4 39.707 -20.225 -4.978 1 39.68 ? C2 ATP 800 A 1 HETATM 30 N N3 ATP . . . D 4 39.184 -21.433 -5.279 1 38.3 ? N3 ATP 800 A 1 HETATM 31 C C4 ATP . . . D 4 39.99 -22.459 -5.621 1 38.17 ? C4 ATP 800 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #