data_3MN9 # _model_server_result.job_id x6w31rAGlo-h1CEqj1HTcA _model_server_result.datetime_utc '2024-10-13 00:24:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 3MN9 # _exptl.entry_id 3MN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MN9 _cell.length_a 126.08 _cell.length_b 126.08 _cell.length_c 56.37 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O HOH . A HOH 396 1_555 D CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc2 E O HOH . A HOH 409 1_555 D CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 E O HOH . A HOH 479 1_555 D CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc4 E O HOH . A HOH 496 1_555 D CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 C O1B ATP . A ATP 800 1_555 D CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 C O2G ATP . A ATP 800 1_555 D CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3MN9 _atom_sites.fract_transf_matrix[1][1] 0.007931 _atom_sites.fract_transf_matrix[1][2] 0.004579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 800 800 ATP ATP . D 4 CA A 1 901 901 CA CA . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 376 2 HOH HOH . E 5 HOH A 3 377 3 HOH HOH . E 5 HOH A 4 378 4 HOH HOH . E 5 HOH A 5 379 5 HOH HOH . E 5 HOH A 6 380 6 HOH HOH . E 5 HOH A 7 381 8 HOH HOH . E 5 HOH A 8 382 9 HOH HOH . E 5 HOH A 9 383 10 HOH HOH . E 5 HOH A 10 384 11 HOH HOH . E 5 HOH A 11 385 12 HOH HOH . E 5 HOH A 12 386 13 HOH HOH . E 5 HOH A 13 387 14 HOH HOH . E 5 HOH A 14 388 15 HOH HOH . E 5 HOH A 15 389 16 HOH HOH . E 5 HOH A 16 390 17 HOH HOH . E 5 HOH A 17 391 18 HOH HOH . E 5 HOH A 18 392 19 HOH HOH . E 5 HOH A 19 393 20 HOH HOH . E 5 HOH A 20 394 21 HOH HOH . E 5 HOH A 21 395 22 HOH HOH . E 5 HOH A 22 396 23 HOH HOH . E 5 HOH A 23 397 24 HOH HOH . E 5 HOH A 24 398 25 HOH HOH . E 5 HOH A 25 399 26 HOH HOH . E 5 HOH A 26 400 27 HOH HOH . E 5 HOH A 27 401 28 HOH HOH . E 5 HOH A 28 402 29 HOH HOH . E 5 HOH A 29 403 30 HOH HOH . E 5 HOH A 30 404 31 HOH HOH . E 5 HOH A 31 405 32 HOH HOH . E 5 HOH A 32 406 33 HOH HOH . E 5 HOH A 33 407 34 HOH HOH . E 5 HOH A 34 408 35 HOH HOH . E 5 HOH A 35 409 36 HOH HOH . E 5 HOH A 36 410 37 HOH HOH . E 5 HOH A 37 411 38 HOH HOH . E 5 HOH A 38 412 39 HOH HOH . E 5 HOH A 39 413 40 HOH HOH . E 5 HOH A 40 414 41 HOH HOH . E 5 HOH A 41 415 42 HOH HOH . E 5 HOH A 42 416 43 HOH HOH . E 5 HOH A 43 417 44 HOH HOH . E 5 HOH A 44 418 45 HOH HOH . E 5 HOH A 45 419 46 HOH HOH . E 5 HOH A 46 420 47 HOH HOH . E 5 HOH A 47 421 48 HOH HOH . E 5 HOH A 48 422 49 HOH HOH . E 5 HOH A 49 423 50 HOH HOH . E 5 HOH A 50 424 51 HOH HOH . E 5 HOH A 51 425 52 HOH HOH . E 5 HOH A 52 426 53 HOH HOH . E 5 HOH A 53 427 54 HOH HOH . E 5 HOH A 54 428 55 HOH HOH . E 5 HOH A 55 429 56 HOH HOH . E 5 HOH A 56 430 57 HOH HOH . E 5 HOH A 57 431 58 HOH HOH . E 5 HOH A 58 432 59 HOH HOH . E 5 HOH A 59 433 60 HOH HOH . E 5 HOH A 60 434 61 HOH HOH . E 5 HOH A 61 435 62 HOH HOH . E 5 HOH A 62 436 63 HOH HOH . E 5 HOH A 63 437 64 HOH HOH . E 5 HOH A 64 438 65 HOH HOH . E 5 HOH A 65 439 66 HOH HOH . E 5 HOH A 66 440 67 HOH HOH . E 5 HOH A 67 441 68 HOH HOH . E 5 HOH A 68 442 69 HOH HOH . E 5 HOH A 69 443 70 HOH HOH . E 5 HOH A 70 444 71 HOH HOH . E 5 HOH A 71 445 72 HOH HOH . E 5 HOH A 72 446 73 HOH HOH . E 5 HOH A 73 447 75 HOH HOH . E 5 HOH A 74 448 76 HOH HOH . E 5 HOH A 75 449 77 HOH HOH . E 5 HOH A 76 450 78 HOH HOH . E 5 HOH A 77 451 79 HOH HOH . E 5 HOH A 78 452 80 HOH HOH . E 5 HOH A 79 453 82 HOH HOH . E 5 HOH A 80 454 83 HOH HOH . E 5 HOH A 81 455 84 HOH HOH . E 5 HOH A 82 456 85 HOH HOH . E 5 HOH A 83 457 86 HOH HOH . E 5 HOH A 84 458 87 HOH HOH . E 5 HOH A 85 459 88 HOH HOH . E 5 HOH A 86 460 89 HOH HOH . E 5 HOH A 87 461 90 HOH HOH . E 5 HOH A 88 462 91 HOH HOH . E 5 HOH A 89 463 92 HOH HOH . E 5 HOH A 90 464 93 HOH HOH . E 5 HOH A 91 465 94 HOH HOH . E 5 HOH A 92 466 95 HOH HOH . E 5 HOH A 93 467 96 HOH HOH . E 5 HOH A 94 468 97 HOH HOH . E 5 HOH A 95 469 98 HOH HOH . E 5 HOH A 96 470 99 HOH HOH . E 5 HOH A 97 471 100 HOH HOH . E 5 HOH A 98 472 101 HOH HOH . E 5 HOH A 99 473 102 HOH HOH . E 5 HOH A 100 474 103 HOH HOH . E 5 HOH A 101 475 104 HOH HOH . E 5 HOH A 102 476 105 HOH HOH . E 5 HOH A 103 477 106 HOH HOH . E 5 HOH A 104 478 107 HOH HOH . E 5 HOH A 105 479 108 HOH HOH . E 5 HOH A 106 480 109 HOH HOH . E 5 HOH A 107 481 110 HOH HOH . E 5 HOH A 108 482 111 HOH HOH . E 5 HOH A 109 483 112 HOH HOH . E 5 HOH A 110 484 114 HOH HOH . E 5 HOH A 111 485 115 HOH HOH . E 5 HOH A 112 486 116 HOH HOH . E 5 HOH A 113 487 117 HOH HOH . E 5 HOH A 114 488 118 HOH HOH . E 5 HOH A 115 489 119 HOH HOH . E 5 HOH A 116 490 120 HOH HOH . E 5 HOH A 117 491 121 HOH HOH . E 5 HOH A 118 492 122 HOH HOH . E 5 HOH A 119 493 123 HOH HOH . E 5 HOH A 120 494 124 HOH HOH . E 5 HOH A 121 495 125 HOH HOH . E 5 HOH A 122 496 126 HOH HOH . E 5 HOH A 123 497 127 HOH HOH . E 5 HOH A 124 498 128 HOH HOH . E 5 HOH A 125 499 129 HOH HOH . E 5 HOH A 126 500 130 HOH HOH . E 5 HOH A 127 501 131 HOH HOH . E 5 HOH A 128 502 135 HOH HOH . E 5 HOH A 129 503 136 HOH HOH . E 5 HOH A 130 504 137 HOH HOH . E 5 HOH A 131 505 138 HOH HOH . E 5 HOH A 132 506 139 HOH HOH . E 5 HOH A 133 507 141 HOH HOH . E 5 HOH A 134 508 142 HOH HOH . F 5 HOH X 1 20 7 HOH HOH . F 5 HOH X 2 74 74 HOH HOH . F 5 HOH X 3 81 81 HOH HOH . F 5 HOH X 4 113 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 35.07 -31.69 -2.629 1 23.14 ? PG ATP 800 A 1 HETATM 2 O O1G ATP . . . C 3 33.973 -30.653 -2.808 1 22.15 ? O1G ATP 800 A 1 HETATM 3 O O2G ATP . . . C 3 35.894 -31.527 -1.421 1 23.87 ? O2G ATP 800 A 1 HETATM 4 O O3G ATP . . . C 3 34.531 -33.092 -2.757 1 27.32 ? O3G ATP 800 A 1 HETATM 5 P PB ATP . . . C 3 37.543 -31.663 -4.084 1 22.87 ? PB ATP 800 A 1 HETATM 6 O O1B ATP . . . C 3 38.03 -32.415 -2.918 1 24.83 ? O1B ATP 800 A 1 HETATM 7 O O2B ATP . . . C 3 37.774 -32.022 -5.465 1 26.16 ? O2B ATP 800 A 1 HETATM 8 O O3B ATP . . . C 3 35.956 -31.54 -3.931 1 24.72 ? O3B ATP 800 A 1 HETATM 9 P PA ATP . . . C 3 39.377 -29.499 -3.761 1 29.77 ? PA ATP 800 A 1 HETATM 10 O O1A ATP . . . C 3 39.63 -29.253 -2.315 1 26.03 ? O1A ATP 800 A 1 HETATM 11 O O2A ATP . . . C 3 40.283 -30.399 -4.539 1 31.04 ? O2A ATP 800 A 1 HETATM 12 O O3A ATP . . . C 3 37.93 -30.109 -3.975 1 28.35 ? O3A ATP 800 A 1 HETATM 13 O O5' ATP . . . C 3 39.191 -28.073 -4.415 1 28.76 ? O5' ATP 800 A 1 HETATM 14 C C5' ATP . . . C 3 38.854 -27.919 -5.788 1 29.97 ? C5' ATP 800 A 1 HETATM 15 C C4' ATP . . . C 3 38.04 -26.648 -5.943 1 27.98 ? C4' ATP 800 A 1 HETATM 16 O O4' ATP . . . C 3 38.841 -25.576 -5.425 1 29.43 ? O4' ATP 800 A 1 HETATM 17 C C3' ATP . . . C 3 37.756 -26.281 -7.371 1 28.43 ? C3' ATP 800 A 1 HETATM 18 O O3' ATP . . . C 3 36.434 -25.778 -7.453 1 27.69 ? O3' ATP 800 A 1 HETATM 19 C C2' ATP . . . C 3 38.631 -25.073 -7.673 1 27.86 ? C2' ATP 800 A 1 HETATM 20 O O2' ATP . . . C 3 38.007 -24.167 -8.616 1 27.46 ? O2' ATP 800 A 1 HETATM 21 C C1' ATP . . . C 3 38.811 -24.452 -6.285 1 27.11 ? C1' ATP 800 A 1 HETATM 22 N N9 ATP . . . C 3 40.07 -23.706 -6.16 1 27.58 ? N9 ATP 800 A 1 HETATM 23 C C8 ATP . . . C 3 41.289 -24.222 -6.414 1 26.36 ? C8 ATP 800 A 1 HETATM 24 N N7 ATP . . . C 3 42.227 -23.279 -6.204 1 31.73 ? N7 ATP 800 A 1 HETATM 25 C C5 ATP . . . C 3 41.561 -22.144 -5.849 1 26.74 ? C5 ATP 800 A 1 HETATM 26 C C6 ATP . . . C 3 41.963 -20.785 -5.51 1 29.85 ? C6 ATP 800 A 1 HETATM 27 N N6 ATP . . . C 3 43.308 -20.524 -5.548 1 29.44 ? N6 ATP 800 A 1 HETATM 28 N N1 ATP . . . C 3 40.992 -19.87 -5.174 1 26.35 ? N1 ATP 800 A 1 HETATM 29 C C2 ATP . . . C 3 39.675 -20.195 -5.163 1 26.61 ? C2 ATP 800 A 1 HETATM 30 N N3 ATP . . . C 3 39.251 -21.418 -5.466 1 27.16 ? N3 ATP 800 A 1 HETATM 31 C C4 ATP . . . C 3 40.146 -22.417 -5.818 1 27.26 ? C4 ATP 800 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #