data_3MNE # _model_server_result.job_id 7flvxE4TSLQZ8IfeU1yQag _model_server_result.datetime_utc '2024-11-29 16:20:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3MNE # _exptl.entry_id 3MNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MNE _cell.length_a 71.82 _cell.length_b 71.82 _cell.length_c 128.65 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 189 n n C1 C2 GOL sing 190 n n C1 H11 GOL sing 191 n n C1 H12 GOL sing 192 n n O1 HO1 GOL sing 193 n n C2 O2 GOL sing 194 n n C2 C3 GOL sing 195 n n C2 H2 GOL sing 196 n n O2 HO2 GOL sing 197 n n C3 O3 GOL sing 198 n n C3 H31 GOL sing 199 n n C3 H32 GOL sing 200 n n O3 HO3 GOL sing 201 n n # _atom_sites.entry_id 3MNE _atom_sites.fract_transf_matrix[1][1] 0.013924 _atom_sites.fract_transf_matrix[1][2] 0.008039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1 1 GOL GOL . D 4 DEX A 1 784 778 DEX DEX . E 3 GOL A 1 785 779 GOL GOL . F 5 HOH A 1 2 2 HOH HOH . F 5 HOH A 2 3 3 HOH HOH . F 5 HOH A 3 4 4 HOH HOH . F 5 HOH A 4 5 5 HOH HOH . F 5 HOH A 5 6 6 HOH HOH . F 5 HOH A 6 7 7 HOH HOH . F 5 HOH A 7 8 8 HOH HOH . F 5 HOH A 8 9 9 HOH HOH . F 5 HOH A 9 10 10 HOH HOH . F 5 HOH A 10 11 11 HOH HOH . F 5 HOH A 11 12 12 HOH HOH . F 5 HOH A 12 13 13 HOH HOH . F 5 HOH A 13 14 14 HOH HOH . F 5 HOH A 14 15 15 HOH HOH . F 5 HOH A 15 16 16 HOH HOH . F 5 HOH A 16 17 17 HOH HOH . F 5 HOH A 17 18 18 HOH HOH . F 5 HOH A 18 19 19 HOH HOH . F 5 HOH A 19 20 20 HOH HOH . F 5 HOH A 20 21 21 HOH HOH . F 5 HOH A 21 22 22 HOH HOH . F 5 HOH A 22 23 23 HOH HOH . F 5 HOH A 23 24 24 HOH HOH . F 5 HOH A 24 25 25 HOH HOH . F 5 HOH A 25 26 26 HOH HOH . F 5 HOH A 26 27 27 HOH HOH . F 5 HOH A 27 28 28 HOH HOH . F 5 HOH A 28 29 29 HOH HOH . F 5 HOH A 29 30 30 HOH HOH . F 5 HOH A 30 31 31 HOH HOH . F 5 HOH A 31 32 32 HOH HOH . F 5 HOH A 32 33 33 HOH HOH . F 5 HOH A 33 34 34 HOH HOH . F 5 HOH A 34 35 35 HOH HOH . F 5 HOH A 35 36 36 HOH HOH . F 5 HOH A 36 37 37 HOH HOH . F 5 HOH A 37 38 38 HOH HOH . F 5 HOH A 38 39 39 HOH HOH . F 5 HOH A 39 40 40 HOH HOH . F 5 HOH A 40 41 41 HOH HOH . F 5 HOH A 41 42 42 HOH HOH . F 5 HOH A 42 43 43 HOH HOH . F 5 HOH A 43 44 44 HOH HOH . F 5 HOH A 44 45 45 HOH HOH . F 5 HOH A 45 46 46 HOH HOH . F 5 HOH A 46 47 47 HOH HOH . F 5 HOH A 47 48 48 HOH HOH . F 5 HOH A 48 49 49 HOH HOH . F 5 HOH A 49 50 50 HOH HOH . F 5 HOH A 50 51 51 HOH HOH . F 5 HOH A 51 52 52 HOH HOH . F 5 HOH A 52 53 53 HOH HOH . F 5 HOH A 53 54 54 HOH HOH . F 5 HOH A 54 55 55 HOH HOH . F 5 HOH A 55 56 56 HOH HOH . F 5 HOH A 56 57 57 HOH HOH . F 5 HOH A 57 58 58 HOH HOH . F 5 HOH A 58 59 59 HOH HOH . F 5 HOH A 59 60 60 HOH HOH . F 5 HOH A 60 61 61 HOH HOH . F 5 HOH A 61 62 62 HOH HOH . F 5 HOH A 62 63 63 HOH HOH . F 5 HOH A 63 64 64 HOH HOH . F 5 HOH A 64 65 65 HOH HOH . F 5 HOH A 65 66 66 HOH HOH . F 5 HOH A 66 67 67 HOH HOH . F 5 HOH A 67 68 68 HOH HOH . F 5 HOH A 68 69 69 HOH HOH . F 5 HOH A 69 70 70 HOH HOH . F 5 HOH A 70 71 71 HOH HOH . F 5 HOH A 71 72 72 HOH HOH . F 5 HOH A 72 73 73 HOH HOH . F 5 HOH A 73 74 74 HOH HOH . F 5 HOH A 74 75 75 HOH HOH . F 5 HOH A 75 76 76 HOH HOH . F 5 HOH A 76 77 77 HOH HOH . F 5 HOH A 77 78 78 HOH HOH . F 5 HOH A 78 79 79 HOH HOH . F 5 HOH A 79 80 80 HOH HOH . F 5 HOH A 80 81 81 HOH HOH . F 5 HOH A 81 82 82 HOH HOH . F 5 HOH A 82 83 83 HOH HOH . F 5 HOH A 83 84 84 HOH HOH . F 5 HOH A 84 85 85 HOH HOH . F 5 HOH A 85 86 86 HOH HOH . F 5 HOH A 86 87 87 HOH HOH . F 5 HOH A 87 88 88 HOH HOH . F 5 HOH A 88 89 89 HOH HOH . F 5 HOH A 89 90 90 HOH HOH . F 5 HOH A 90 91 91 HOH HOH . F 5 HOH A 91 92 92 HOH HOH . F 5 HOH A 92 93 93 HOH HOH . F 5 HOH A 93 94 94 HOH HOH . F 5 HOH A 94 95 95 HOH HOH . F 5 HOH A 95 96 96 HOH HOH . F 5 HOH A 96 97 97 HOH HOH . F 5 HOH A 97 98 98 HOH HOH . F 5 HOH A 98 99 99 HOH HOH . F 5 HOH A 99 100 100 HOH HOH . F 5 HOH A 100 101 101 HOH HOH . F 5 HOH A 101 102 102 HOH HOH . F 5 HOH A 102 103 103 HOH HOH . F 5 HOH A 103 104 104 HOH HOH . F 5 HOH A 104 105 105 HOH HOH . F 5 HOH A 105 106 106 HOH HOH . F 5 HOH A 106 107 107 HOH HOH . F 5 HOH A 107 108 108 HOH HOH . F 5 HOH A 108 109 109 HOH HOH . F 5 HOH A 109 110 110 HOH HOH . F 5 HOH A 110 111 111 HOH HOH . F 5 HOH A 111 112 112 HOH HOH . F 5 HOH A 112 114 114 HOH HOH . F 5 HOH A 113 116 116 HOH HOH . F 5 HOH A 114 117 117 HOH HOH . F 5 HOH A 115 119 119 HOH HOH . F 5 HOH A 116 120 120 HOH HOH . F 5 HOH A 117 121 121 HOH HOH . F 5 HOH A 118 122 122 HOH HOH . F 5 HOH A 119 123 123 HOH HOH . F 5 HOH A 120 124 124 HOH HOH . F 5 HOH A 121 125 125 HOH HOH . F 5 HOH A 122 126 126 HOH HOH . F 5 HOH A 123 127 127 HOH HOH . F 5 HOH A 124 128 128 HOH HOH . F 5 HOH A 125 129 129 HOH HOH . F 5 HOH A 126 130 130 HOH HOH . F 5 HOH A 127 131 131 HOH HOH . F 5 HOH A 128 132 132 HOH HOH . F 5 HOH A 129 133 133 HOH HOH . F 5 HOH A 130 134 134 HOH HOH . F 5 HOH A 131 136 136 HOH HOH . F 5 HOH A 132 137 137 HOH HOH . F 5 HOH A 133 138 138 HOH HOH . F 5 HOH A 134 139 139 HOH HOH . F 5 HOH A 135 140 140 HOH HOH . F 5 HOH A 136 141 141 HOH HOH . F 5 HOH A 137 142 142 HOH HOH . F 5 HOH A 138 143 143 HOH HOH . F 5 HOH A 139 144 144 HOH HOH . F 5 HOH A 140 145 145 HOH HOH . F 5 HOH A 141 146 146 HOH HOH . F 5 HOH A 142 147 147 HOH HOH . F 5 HOH A 143 148 148 HOH HOH . F 5 HOH A 144 149 149 HOH HOH . F 5 HOH A 145 150 150 HOH HOH . F 5 HOH A 146 151 151 HOH HOH . F 5 HOH A 147 152 152 HOH HOH . F 5 HOH A 148 153 153 HOH HOH . F 5 HOH A 149 154 154 HOH HOH . F 5 HOH A 150 155 155 HOH HOH . F 5 HOH A 151 156 156 HOH HOH . F 5 HOH A 152 157 157 HOH HOH . F 5 HOH A 153 158 158 HOH HOH . F 5 HOH A 154 159 159 HOH HOH . F 5 HOH A 155 160 160 HOH HOH . F 5 HOH A 156 161 161 HOH HOH . F 5 HOH A 157 162 162 HOH HOH . F 5 HOH A 158 163 163 HOH HOH . F 5 HOH A 159 164 164 HOH HOH . F 5 HOH A 160 165 165 HOH HOH . F 5 HOH A 161 166 166 HOH HOH . F 5 HOH A 162 167 167 HOH HOH . F 5 HOH A 163 168 168 HOH HOH . F 5 HOH A 164 169 169 HOH HOH . F 5 HOH A 165 170 170 HOH HOH . F 5 HOH A 166 171 171 HOH HOH . F 5 HOH A 167 172 172 HOH HOH . F 5 HOH A 168 173 173 HOH HOH . F 5 HOH A 169 174 174 HOH HOH . F 5 HOH A 170 175 175 HOH HOH . F 5 HOH A 171 176 176 HOH HOH . F 5 HOH A 172 177 177 HOH HOH . F 5 HOH A 173 178 178 HOH HOH . F 5 HOH A 174 179 179 HOH HOH . F 5 HOH A 175 181 181 HOH HOH . F 5 HOH A 176 183 183 HOH HOH . F 5 HOH A 177 185 185 HOH HOH . F 5 HOH A 178 186 186 HOH HOH . F 5 HOH A 179 187 187 HOH HOH . F 5 HOH A 180 188 188 HOH HOH . F 5 HOH A 181 190 190 HOH HOH . F 5 HOH A 182 191 191 HOH HOH . F 5 HOH A 183 192 192 HOH HOH . F 5 HOH A 184 193 193 HOH HOH . F 5 HOH A 185 194 194 HOH HOH . F 5 HOH A 186 195 195 HOH HOH . F 5 HOH A 187 196 196 HOH HOH . F 5 HOH A 188 197 197 HOH HOH . F 5 HOH A 189 198 198 HOH HOH . F 5 HOH A 190 199 199 HOH HOH . F 5 HOH A 191 200 200 HOH HOH . F 5 HOH A 192 201 201 HOH HOH . F 5 HOH A 193 202 202 HOH HOH . F 5 HOH A 194 203 203 HOH HOH . F 5 HOH A 195 204 204 HOH HOH . F 5 HOH A 196 205 205 HOH HOH . F 5 HOH A 197 206 206 HOH HOH . F 5 HOH A 198 208 208 HOH HOH . F 5 HOH A 199 209 209 HOH HOH . F 5 HOH A 200 210 210 HOH HOH . F 5 HOH A 201 211 211 HOH HOH . F 5 HOH A 202 213 213 HOH HOH . F 5 HOH A 203 214 214 HOH HOH . F 5 HOH A 204 215 215 HOH HOH . F 5 HOH A 205 216 216 HOH HOH . F 5 HOH A 206 217 217 HOH HOH . F 5 HOH A 207 218 218 HOH HOH . F 5 HOH A 208 219 219 HOH HOH . F 5 HOH A 209 220 220 HOH HOH . F 5 HOH A 210 221 221 HOH HOH . F 5 HOH A 211 222 222 HOH HOH . F 5 HOH A 212 786 786 HOH HOH . F 5 HOH A 213 787 787 HOH HOH . F 5 HOH A 214 788 788 HOH HOH . F 5 HOH A 215 789 789 HOH HOH . F 5 HOH A 216 790 790 HOH HOH . F 5 HOH A 217 791 791 HOH HOH . F 5 HOH A 218 792 792 HOH HOH . F 5 HOH A 219 793 793 HOH HOH . F 5 HOH A 220 794 794 HOH HOH . F 5 HOH A 221 795 795 HOH HOH . F 5 HOH A 222 796 796 HOH HOH . F 5 HOH A 223 797 797 HOH HOH . F 5 HOH A 224 798 798 HOH HOH . F 5 HOH A 225 799 799 HOH HOH . F 5 HOH A 226 800 800 HOH HOH . F 5 HOH A 227 801 801 HOH HOH . F 5 HOH A 228 802 802 HOH HOH . F 5 HOH A 229 803 803 HOH HOH . F 5 HOH A 230 804 804 HOH HOH . F 5 HOH A 231 805 805 HOH HOH . F 5 HOH A 232 806 806 HOH HOH . F 5 HOH A 233 807 807 HOH HOH . F 5 HOH A 234 808 808 HOH HOH . F 5 HOH A 235 809 809 HOH HOH . F 5 HOH A 236 810 810 HOH HOH . F 5 HOH A 237 811 811 HOH HOH . F 5 HOH A 238 812 812 HOH HOH . F 5 HOH A 239 813 813 HOH HOH . F 5 HOH A 240 814 814 HOH HOH . F 5 HOH A 241 815 815 HOH HOH . F 5 HOH A 242 816 816 HOH HOH . F 5 HOH A 243 817 817 HOH HOH . F 5 HOH A 244 818 818 HOH HOH . F 5 HOH A 245 819 819 HOH HOH . F 5 HOH A 246 820 820 HOH HOH . F 5 HOH A 247 821 821 HOH HOH . F 5 HOH A 248 822 822 HOH HOH . F 5 HOH A 249 823 823 HOH HOH . F 5 HOH A 250 824 824 HOH HOH . F 5 HOH A 251 825 825 HOH HOH . F 5 HOH A 252 826 826 HOH HOH . F 5 HOH A 253 827 827 HOH HOH . F 5 HOH A 254 828 828 HOH HOH . F 5 HOH A 255 829 829 HOH HOH . F 5 HOH A 256 830 830 HOH HOH . F 5 HOH A 257 831 831 HOH HOH . F 5 HOH A 258 832 832 HOH HOH . F 5 HOH A 259 833 833 HOH HOH . F 5 HOH A 260 834 834 HOH HOH . F 5 HOH A 261 835 835 HOH HOH . F 5 HOH A 262 836 836 HOH HOH . F 5 HOH A 263 837 837 HOH HOH . F 5 HOH A 264 838 838 HOH HOH . F 5 HOH A 265 839 839 HOH HOH . F 5 HOH A 266 840 840 HOH HOH . F 5 HOH A 267 841 841 HOH HOH . F 5 HOH A 268 842 842 HOH HOH . F 5 HOH A 269 843 780 HOH HOH . F 5 HOH A 270 844 781 HOH HOH . F 5 HOH A 271 845 782 HOH HOH . F 5 HOH A 272 846 783 HOH HOH . F 5 HOH A 273 847 784 HOH HOH . F 5 HOH A 274 848 785 HOH HOH . G 5 HOH B 1 113 113 HOH HOH . G 5 HOH B 2 115 115 HOH HOH . G 5 HOH B 3 118 118 HOH HOH . G 5 HOH B 4 135 135 HOH HOH . G 5 HOH B 5 140 140 HOH HOH . G 5 HOH B 6 149 149 HOH HOH . G 5 HOH B 7 180 180 HOH HOH . G 5 HOH B 8 182 182 HOH HOH . G 5 HOH B 9 184 184 HOH HOH . G 5 HOH B 10 189 189 HOH HOH . G 5 HOH B 11 207 207 HOH HOH . G 5 HOH B 12 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -18.385 25.463 -3.281 1 29.17 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . C 3 -17.124 25.38 -2.637 1 31.2 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . C 3 -19.376 26.131 -2.301 1 28.24 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . C 3 -20.423 26.624 -3.129 1 28.2 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . C 3 -19.798 25.112 -1.198 1 28.38 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . C 3 -20.576 25.732 -0.183 1 28.16 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #