data_3MNL # _model_server_result.job_id Ield7fns4AIbk0YFJyzYRQ _model_server_result.datetime_utc '2024-10-19 12:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 3MNL # _exptl.entry_id 3MNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MNL _cell.length_a 41.02 _cell.length_b 54.57 _cell.length_c 165.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 224 n n C1 C2 PGE sing 225 n n C1 H1 PGE sing 226 n n C1 H12 PGE sing 227 n n O1 HO1 PGE sing 228 n n C2 O2 PGE sing 229 n n C2 H2 PGE sing 230 n n C2 H22 PGE sing 231 n n O2 C3 PGE sing 232 n n C3 C4 PGE sing 233 n n C3 H3 PGE sing 234 n n C3 H32 PGE sing 235 n n C4 O3 PGE sing 236 n n C4 H4 PGE sing 237 n n C4 H42 PGE sing 238 n n O4 C6 PGE sing 239 n n O4 HO4 PGE sing 240 n n C6 C5 PGE sing 241 n n C6 H6 PGE sing 242 n n C6 H62 PGE sing 243 n n C5 O3 PGE sing 244 n n C5 H5 PGE sing 245 n n C5 H52 PGE sing 246 n n # _atom_sites.entry_id 3MNL _atom_sites.fract_transf_matrix[1][1] 0.024378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGE A 1 200 1 PGE PGE . D 2 PGE B 1 200 1 PGE PGE . E 2 PGE B 1 201 1 PGE PGE . F 3 HOH A 1 201 1 HOH HOH . F 3 HOH A 2 202 2 HOH HOH . F 3 HOH A 3 203 3 HOH HOH . F 3 HOH A 4 204 4 HOH HOH . F 3 HOH A 5 205 6 HOH HOH . F 3 HOH A 6 206 9 HOH HOH . F 3 HOH A 7 207 10 HOH HOH . F 3 HOH A 8 208 11 HOH HOH . F 3 HOH A 9 209 12 HOH HOH . F 3 HOH A 10 210 13 HOH HOH . F 3 HOH A 11 211 15 HOH HOH . F 3 HOH A 12 212 16 HOH HOH . F 3 HOH A 13 213 18 HOH HOH . F 3 HOH A 14 214 19 HOH HOH . F 3 HOH A 15 215 20 HOH HOH . F 3 HOH A 16 216 22 HOH HOH . F 3 HOH A 17 217 24 HOH HOH . F 3 HOH A 18 218 27 HOH HOH . F 3 HOH A 19 219 29 HOH HOH . F 3 HOH A 20 220 30 HOH HOH . F 3 HOH A 21 221 31 HOH HOH . F 3 HOH A 22 222 32 HOH HOH . F 3 HOH A 23 223 35 HOH HOH . F 3 HOH A 24 224 36 HOH HOH . F 3 HOH A 25 225 37 HOH HOH . F 3 HOH A 26 226 38 HOH HOH . F 3 HOH A 27 227 39 HOH HOH . F 3 HOH A 28 228 41 HOH HOH . F 3 HOH A 29 229 43 HOH HOH . F 3 HOH A 30 230 45 HOH HOH . F 3 HOH A 31 231 46 HOH HOH . F 3 HOH A 32 232 47 HOH HOH . F 3 HOH A 33 233 48 HOH HOH . F 3 HOH A 34 234 49 HOH HOH . F 3 HOH A 35 235 51 HOH HOH . F 3 HOH A 36 236 52 HOH HOH . F 3 HOH A 37 237 54 HOH HOH . F 3 HOH A 38 238 55 HOH HOH . F 3 HOH A 39 239 58 HOH HOH . F 3 HOH A 40 240 59 HOH HOH . F 3 HOH A 41 241 61 HOH HOH . F 3 HOH A 42 242 64 HOH HOH . F 3 HOH A 43 243 65 HOH HOH . F 3 HOH A 44 244 66 HOH HOH . F 3 HOH A 45 245 67 HOH HOH . F 3 HOH A 46 246 68 HOH HOH . F 3 HOH A 47 247 74 HOH HOH . F 3 HOH A 48 248 75 HOH HOH . F 3 HOH A 49 249 76 HOH HOH . F 3 HOH A 50 250 77 HOH HOH . F 3 HOH A 51 251 80 HOH HOH . F 3 HOH A 52 252 83 HOH HOH . F 3 HOH A 53 253 88 HOH HOH . F 3 HOH A 54 254 96 HOH HOH . F 3 HOH A 55 255 98 HOH HOH . F 3 HOH A 56 256 101 HOH HOH . F 3 HOH A 57 257 102 HOH HOH . F 3 HOH A 58 258 103 HOH HOH . F 3 HOH A 59 259 109 HOH HOH . F 3 HOH A 60 260 110 HOH HOH . F 3 HOH A 61 261 112 HOH HOH . F 3 HOH A 62 262 113 HOH HOH . G 3 HOH B 1 202 5 HOH HOH . G 3 HOH B 2 203 7 HOH HOH . G 3 HOH B 3 204 8 HOH HOH . G 3 HOH B 4 205 14 HOH HOH . G 3 HOH B 5 206 17 HOH HOH . G 3 HOH B 6 207 21 HOH HOH . G 3 HOH B 7 208 23 HOH HOH . G 3 HOH B 8 209 25 HOH HOH . G 3 HOH B 9 210 26 HOH HOH . G 3 HOH B 10 211 28 HOH HOH . G 3 HOH B 11 212 33 HOH HOH . G 3 HOH B 12 213 34 HOH HOH . G 3 HOH B 13 214 40 HOH HOH . G 3 HOH B 14 215 42 HOH HOH . G 3 HOH B 15 216 44 HOH HOH . G 3 HOH B 16 217 50 HOH HOH . G 3 HOH B 17 218 53 HOH HOH . G 3 HOH B 18 219 56 HOH HOH . G 3 HOH B 19 220 57 HOH HOH . G 3 HOH B 20 221 60 HOH HOH . G 3 HOH B 21 222 62 HOH HOH . G 3 HOH B 22 223 63 HOH HOH . G 3 HOH B 23 224 69 HOH HOH . G 3 HOH B 24 225 70 HOH HOH . G 3 HOH B 25 226 71 HOH HOH . G 3 HOH B 26 227 72 HOH HOH . G 3 HOH B 27 228 73 HOH HOH . G 3 HOH B 28 229 78 HOH HOH . G 3 HOH B 29 230 79 HOH HOH . G 3 HOH B 30 231 81 HOH HOH . G 3 HOH B 31 232 82 HOH HOH . G 3 HOH B 32 233 84 HOH HOH . G 3 HOH B 33 234 85 HOH HOH . G 3 HOH B 34 235 86 HOH HOH . G 3 HOH B 35 236 87 HOH HOH . G 3 HOH B 36 237 89 HOH HOH . G 3 HOH B 37 238 90 HOH HOH . G 3 HOH B 38 239 91 HOH HOH . G 3 HOH B 39 240 92 HOH HOH . G 3 HOH B 40 241 93 HOH HOH . G 3 HOH B 41 242 94 HOH HOH . G 3 HOH B 42 243 95 HOH HOH . G 3 HOH B 43 244 97 HOH HOH . G 3 HOH B 44 245 99 HOH HOH . G 3 HOH B 45 246 100 HOH HOH . G 3 HOH B 46 247 104 HOH HOH . G 3 HOH B 47 248 105 HOH HOH . G 3 HOH B 48 249 106 HOH HOH . G 3 HOH B 49 250 107 HOH HOH . G 3 HOH B 50 251 108 HOH HOH . G 3 HOH B 51 252 111 HOH HOH . G 3 HOH B 52 253 114 HOH HOH . G 3 HOH B 53 254 115 HOH HOH . G 3 HOH B 54 255 116 HOH HOH . G 3 HOH B 55 256 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PGE . . . D 2 -1.101 -1.975 15.285 1 60.81 ? O2 PGE 200 B 1 HETATM 2 C C3 PGE . . . D 2 -0.886 -3.066 16.165 1 60.06 ? C3 PGE 200 B 1 HETATM 3 C C4 PGE . . . D 2 -2.147 -3.783 16.401 1 60.18 ? C4 PGE 200 B 1 HETATM 4 O O4 PGE . . . D 2 -1.706 -7.821 18.933 1 22.62 ? O4 PGE 200 B 1 HETATM 5 C C6 PGE . . . D 2 -1.313 -6.762 17.95 1 33.92 ? C6 PGE 200 B 1 HETATM 6 C C5 PGE . . . D 2 -2.409 -5.886 17.475 1 51.55 ? C5 PGE 200 B 1 HETATM 7 O O3 PGE . . . D 2 -2.019 -4.527 17.589 1 65.79 ? O3 PGE 200 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #