data_3MO0 # _model_server_result.job_id k-br63bOdiHEtc0H1o7nKw _model_server_result.datetime_utc '2024-11-12 19:36:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mo0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":102}' # _entry.id 3MO0 # _exptl.entry_id 3MO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MO0 _cell.length_a 47.3 _cell.length_b 94.5 _cell.length_c 138.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,T 1 1 B,K,L,M,N,O,P,Q,R,S,U 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 44 A CYS 994 1_555 A SG CYS 53 A CYS 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 44 B CYS 994 1_555 B SG CYS 53 B CYS 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 F ZN ZN . A ZN 2 1_555 A SG CYS 87 A CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 F ZN ZN . A ZN 2 1_555 A SG CYS 124 A CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 F ZN ZN . A ZN 2 1_555 A SG CYS 130 A CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc4 F ZN ZN . A ZN 2 1_555 A SG CYS 134 A CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc5 G ZN ZN . A ZN 3 1_555 A SG CYS 81 A CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc6 G ZN ZN . A ZN 3 1_555 A SG CYS 83 A CYS 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc7 G ZN ZN . A ZN 3 1_555 A SG CYS 87 A CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc8 G ZN ZN . A ZN 3 1_555 A SG CYS 92 A CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc9 H ZN ZN . A ZN 4 1_555 A SG CYS 222 A CYS 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc10 H ZN ZN . A ZN 4 1_555 A SG CYS 275 A CYS 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc11 H ZN ZN . A ZN 4 1_555 A SG CYS 282 A CYS 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc12 I ZN ZN . A ZN 10 1_555 A NE2 HIS 126 A HIS 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc13 I ZN ZN . A ZN 10 1_555 A NE2 HIS 235 A HIS 1185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc14 I ZN ZN . A ZN 10 1_555 B SG CYS 64 B CYS 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc15 A SG CYS 64 A CYS 1014 1_555 S ZN ZN . B ZN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc16 A SG CYS 81 A CYS 1031 1_555 E ZN ZN . A ZN 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc17 A SG CYS 94 A CYS 1044 1_555 E ZN ZN . A ZN 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc18 A SG CYS 124 A CYS 1074 1_555 E ZN ZN . A ZN 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc19 A SG CYS 128 A CYS 1078 1_555 E ZN ZN . A ZN 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc20 O ZN ZN . B ZN 5 1_555 B SG CYS 81 B CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc21 O ZN ZN . B ZN 5 1_555 B SG CYS 94 B CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc22 O ZN ZN . B ZN 5 1_555 B SG CYS 124 B CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc23 O ZN ZN . B ZN 5 1_555 B SG CYS 128 B CYS 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc24 P ZN ZN . B ZN 6 1_555 B SG CYS 87 B CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc25 P ZN ZN . B ZN 6 1_555 B SG CYS 124 B CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc26 P ZN ZN . B ZN 6 1_555 B SG CYS 130 B CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc27 P ZN ZN . B ZN 6 1_555 B SG CYS 134 B CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc28 Q ZN ZN . B ZN 7 1_555 B SG CYS 81 B CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc29 Q ZN ZN . B ZN 7 1_555 B SG CYS 83 B CYS 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc30 Q ZN ZN . B ZN 7 1_555 B SG CYS 87 B CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc31 Q ZN ZN . B ZN 7 1_555 B SG CYS 92 B CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc32 R ZN ZN . B ZN 8 1_555 B SG CYS 222 B CYS 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc33 R ZN ZN . B ZN 8 1_555 B SG CYS 275 B CYS 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc34 R ZN ZN . B ZN 8 1_555 B SG CYS 277 B CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc35 R ZN ZN . B ZN 8 1_555 B SG CYS 282 B CYS 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc36 S ZN ZN . B ZN 9 1_555 B NE2 HIS 77 B HIS 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc37 S ZN ZN . B ZN 9 1_555 B NE2 HIS 126 B HIS 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 362 n n N HN1 SAH sing 363 n n N HN2 SAH sing 364 n n CA CB SAH sing 365 n n CA C SAH sing 366 n n CA HA SAH sing 367 n n CB CG SAH sing 368 n n CB HB1 SAH sing 369 n n CB HB2 SAH sing 370 n n CG SD SAH sing 371 n n CG HG1 SAH sing 372 n n CG HG2 SAH sing 373 n n SD C5' SAH sing 374 n n C O SAH doub 375 n n C OXT SAH sing 376 n n OXT HXT SAH sing 377 n n C5' C4' SAH sing 378 n n C5' "H5'1" SAH sing 379 n n C5' "H5'2" SAH sing 380 n n C4' O4' SAH sing 381 n n C4' C3' SAH sing 382 n n C4' H4' SAH sing 383 n n O4' C1' SAH sing 384 n n C3' O3' SAH sing 385 n n C3' C2' SAH sing 386 n n C3' H3' SAH sing 387 n n O3' HO3' SAH sing 388 n n C2' O2' SAH sing 389 n n C2' C1' SAH sing 390 n n C2' H2' SAH sing 391 n n O2' HO2' SAH sing 392 n n C1' N9 SAH sing 393 n n C1' H1' SAH sing 394 n n N9 C8 SAH sing 395 n y N9 C4 SAH sing 396 n y C8 N7 SAH doub 397 n y C8 H8 SAH sing 398 n n N7 C5 SAH sing 399 n y C5 C6 SAH sing 400 n y C5 C4 SAH doub 401 n y C6 N6 SAH sing 402 n n C6 N1 SAH doub 403 n y N6 HN61 SAH sing 404 n n N6 HN62 SAH sing 405 n n N1 C2 SAH sing 406 n y C2 N3 SAH doub 407 n y C2 H2 SAH sing 408 n n N3 C4 SAH sing 409 n y # _atom_sites.entry_id 3MO0 _atom_sites.fract_transf_matrix[1][1] 0.021142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 101 101 SAH SAH . D 3 E11 A 1 2001 2001 E11 E11 . E 4 ZN A 1 1236 1236 ZN ZN . F 4 ZN A 1 2 2 ZN ZN . G 4 ZN A 1 3 3 ZN ZN . H 4 ZN A 1 4 4 ZN ZN . I 4 ZN A 1 10 10 ZN ZN . J 3 E11 A 1 2002 2002 E11 E11 . K 5 EDO B 1 1 1 EDO EDO . L 5 EDO B 1 2 2 EDO EDO . M 2 SAH B 1 102 102 SAH SAH . N 3 E11 B 1 2003 2003 E11 E11 . O 4 ZN B 1 5 5 ZN ZN . P 4 ZN B 1 6 6 ZN ZN . Q 4 ZN B 1 7 7 ZN ZN . R 4 ZN B 1 8 8 ZN ZN . S 4 ZN B 1 9 9 ZN ZN . T 6 HOH A 1 6 6 HOH HOH . T 6 HOH A 2 7 7 HOH HOH . T 6 HOH A 3 14 14 HOH HOH . T 6 HOH A 4 21 21 HOH HOH . T 6 HOH A 5 22 22 HOH HOH . T 6 HOH A 6 23 23 HOH HOH . T 6 HOH A 7 24 24 HOH HOH . T 6 HOH A 8 25 25 HOH HOH . T 6 HOH A 9 27 27 HOH HOH . T 6 HOH A 10 28 28 HOH HOH . T 6 HOH A 11 29 29 HOH HOH . T 6 HOH A 12 31 31 HOH HOH . T 6 HOH A 13 32 32 HOH HOH . T 6 HOH A 14 33 33 HOH HOH . T 6 HOH A 15 34 34 HOH HOH . T 6 HOH A 16 35 35 HOH HOH . T 6 HOH A 17 37 37 HOH HOH . T 6 HOH A 18 38 38 HOH HOH . T 6 HOH A 19 1238 1238 HOH HOH . T 6 HOH A 20 1239 1239 HOH HOH . T 6 HOH A 21 1240 1240 HOH HOH . T 6 HOH A 22 1241 1241 HOH HOH . U 6 HOH B 1 11 11 HOH HOH . U 6 HOH B 2 12 12 HOH HOH . U 6 HOH B 3 13 13 HOH HOH . U 6 HOH B 4 15 15 HOH HOH . U 6 HOH B 5 16 16 HOH HOH . U 6 HOH B 6 17 17 HOH HOH . U 6 HOH B 7 18 18 HOH HOH . U 6 HOH B 8 19 19 HOH HOH . U 6 HOH B 9 20 20 HOH HOH . U 6 HOH B 10 26 26 HOH HOH . U 6 HOH B 11 30 30 HOH HOH . U 6 HOH B 12 36 36 HOH HOH . U 6 HOH B 13 39 39 HOH HOH . U 6 HOH B 14 40 40 HOH HOH . U 6 HOH B 15 41 41 HOH HOH . U 6 HOH B 16 42 42 HOH HOH . U 6 HOH B 17 43 43 HOH HOH . U 6 HOH B 18 44 44 HOH HOH . U 6 HOH B 19 45 45 HOH HOH . U 6 HOH B 20 1237 1237 HOH HOH . U 6 HOH B 21 1238 1238 HOH HOH . U 6 HOH B 22 1239 1239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . M 2 23.636 -13.97 58.277 1 57.81 ? N SAH 102 B 1 HETATM 2 C CA SAH . . . M 2 22.488 -14.899 57.899 1 59.27 ? CA SAH 102 B 1 HETATM 3 C CB SAH . . . M 2 21.26 -14.349 57.236 1 60.36 ? CB SAH 102 B 1 HETATM 4 C CG SAH . . . M 2 20.39 -13.292 57.888 1 60.66 ? CG SAH 102 B 1 HETATM 5 S SD SAH . . . M 2 18.971 -14.165 58.486 1 58.32 ? SD SAH 102 B 1 HETATM 6 C C SAH . . . M 2 23.138 -16.026 57.013 1 59.14 ? C SAH 102 B 1 HETATM 7 O O SAH . . . M 2 24.36 -16 56.789 1 59.06 ? O SAH 102 B 1 HETATM 8 O OXT SAH . . . M 2 22.33 -16.934 56.576 1 59.27 ? OXT SAH 102 B 1 HETATM 9 C C5' SAH . . . M 2 19.051 -13.829 60.199 1 61.77 ? C5' SAH 102 B 1 HETATM 10 C C4' SAH . . . M 2 20.111 -14.614 61.082 1 63.95 ? C4' SAH 102 B 1 HETATM 11 O O4' SAH . . . M 2 21.429 -14.057 60.972 1 63.93 ? O4' SAH 102 B 1 HETATM 12 C C3' SAH . . . M 2 19.872 -14.653 62.56 1 65.6 ? C3' SAH 102 B 1 HETATM 13 O O3' SAH . . . M 2 18.956 -15.688 62.925 1 65.8 ? O3' SAH 102 B 1 HETATM 14 C C2' SAH . . . M 2 21.33 -14.834 63.137 1 65.69 ? C2' SAH 102 B 1 HETATM 15 O O2' SAH . . . M 2 21.729 -16.197 63.229 1 68.75 ? O2' SAH 102 B 1 HETATM 16 C C1' SAH . . . M 2 22.244 -14.02 62.208 1 64.43 ? C1' SAH 102 B 1 HETATM 17 N N9 SAH . . . M 2 22.501 -12.781 62.639 1 64.06 ? N9 SAH 102 B 1 HETATM 18 C C8 SAH . . . M 2 22.157 -11.519 62.207 1 64.25 ? C8 SAH 102 B 1 HETATM 19 N N7 SAH . . . M 2 22.61 -10.53 62.91 1 63.94 ? N7 SAH 102 B 1 HETATM 20 C C5 SAH . . . M 2 23.344 -11.162 63.947 1 64.87 ? C5 SAH 102 B 1 HETATM 21 C C6 SAH . . . M 2 24.086 -10.637 65.072 1 65.52 ? C6 SAH 102 B 1 HETATM 22 N N6 SAH . . . M 2 24.209 -9.329 65.331 1 65.82 ? N6 SAH 102 B 1 HETATM 23 N N1 SAH . . . M 2 24.679 -11.574 65.889 1 64.75 ? N1 SAH 102 B 1 HETATM 24 C C2 SAH . . . M 2 24.591 -12.916 65.683 1 64.65 ? C2 SAH 102 B 1 HETATM 25 N N3 SAH . . . M 2 23.891 -13.45 64.626 1 65.75 ? N3 SAH 102 B 1 HETATM 26 C C4 SAH . . . M 2 23.294 -12.528 63.8 1 65.23 ? C4 SAH 102 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #