data_3MOM # _model_server_result.job_id 25ObmL9Wd2_ksr_KPMdL4w _model_server_result.datetime_utc '2024-11-12 20:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":185}' # _entry.id 3MOM # _exptl.entry_id 3MOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.1 _cell.angle_gamma 90 _cell.entry_id 3MOM _cell.length_a 47.373 _cell.length_b 46.378 _cell.length_c 81.088 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 75 A TYR 75 1_555 D FE HEM . A HEM 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 C N1 IMD . A IMD 185 1_555 D FE HEM . A HEM 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 B OH TYR 75 B TYR 75 1_555 G FE HEM . B HEM 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 E N3 IMD . B IMD 185 1_555 G FE HEM . B HEM 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 242 n y N1 C5 IMD sing 243 n y N1 HN1 IMD sing 244 n n C2 N3 IMD doub 245 n y C2 H2 IMD sing 246 n n N3 C4 IMD sing 247 n y N3 HN3 IMD sing 248 n n C4 C5 IMD doub 249 n y C4 H4 IMD sing 250 n n C5 H5 IMD sing 251 n n # _atom_sites.entry_id 3MOM _atom_sites.fract_transf_matrix[1][1] 0.021109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMD A 1 185 1 IMD IMD . D 3 HEM A 1 186 1 HEM HEM . E 2 IMD B 1 185 2 IMD IMD . F 2 IMD B 1 186 3 IMD IMD . G 3 HEM B 1 187 2 HEM HEM . H 4 HOH A 1 187 1 HOH HOH . H 4 HOH A 2 188 2 HOH HOH . H 4 HOH A 3 189 3 HOH HOH . H 4 HOH A 4 190 5 HOH HOH . H 4 HOH A 5 191 8 HOH HOH . H 4 HOH A 6 192 9 HOH HOH . H 4 HOH A 7 193 11 HOH HOH . H 4 HOH A 8 194 12 HOH HOH . H 4 HOH A 9 195 13 HOH HOH . H 4 HOH A 10 196 14 HOH HOH . H 4 HOH A 11 197 15 HOH HOH . H 4 HOH A 12 198 22 HOH HOH . H 4 HOH A 13 199 24 HOH HOH . H 4 HOH A 14 200 26 HOH HOH . H 4 HOH A 15 201 28 HOH HOH . H 4 HOH A 16 202 30 HOH HOH . H 4 HOH A 17 203 31 HOH HOH . H 4 HOH A 18 204 33 HOH HOH . H 4 HOH A 19 205 34 HOH HOH . H 4 HOH A 20 206 35 HOH HOH . H 4 HOH A 21 207 38 HOH HOH . H 4 HOH A 22 208 39 HOH HOH . H 4 HOH A 23 209 44 HOH HOH . H 4 HOH A 24 210 45 HOH HOH . H 4 HOH A 25 211 48 HOH HOH . H 4 HOH A 26 212 49 HOH HOH . H 4 HOH A 27 213 51 HOH HOH . H 4 HOH A 28 214 52 HOH HOH . H 4 HOH A 29 215 53 HOH HOH . H 4 HOH A 30 216 54 HOH HOH . H 4 HOH A 31 217 56 HOH HOH . H 4 HOH A 32 218 57 HOH HOH . H 4 HOH A 33 219 60 HOH HOH . H 4 HOH A 34 220 61 HOH HOH . H 4 HOH A 35 221 68 HOH HOH . I 4 HOH B 1 188 4 HOH HOH . I 4 HOH B 2 189 6 HOH HOH . I 4 HOH B 3 190 7 HOH HOH . I 4 HOH B 4 191 10 HOH HOH . I 4 HOH B 5 192 16 HOH HOH . I 4 HOH B 6 193 17 HOH HOH . I 4 HOH B 7 194 18 HOH HOH . I 4 HOH B 8 195 19 HOH HOH . I 4 HOH B 9 196 20 HOH HOH . I 4 HOH B 10 197 21 HOH HOH . I 4 HOH B 11 198 23 HOH HOH . I 4 HOH B 12 199 25 HOH HOH . I 4 HOH B 13 200 27 HOH HOH . I 4 HOH B 14 201 29 HOH HOH . I 4 HOH B 15 202 32 HOH HOH . I 4 HOH B 16 203 36 HOH HOH . I 4 HOH B 17 204 37 HOH HOH . I 4 HOH B 18 205 40 HOH HOH . I 4 HOH B 19 206 42 HOH HOH . I 4 HOH B 20 207 43 HOH HOH . I 4 HOH B 21 208 46 HOH HOH . I 4 HOH B 22 209 47 HOH HOH . I 4 HOH B 23 210 50 HOH HOH . I 4 HOH B 24 211 55 HOH HOH . I 4 HOH B 25 212 58 HOH HOH . I 4 HOH B 26 213 59 HOH HOH . I 4 HOH B 27 214 62 HOH HOH . I 4 HOH B 28 215 65 HOH HOH . I 4 HOH B 29 216 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . E 2 -6.031 18.757 -15.544 1 38.2 ? N1 IMD 185 B 1 HETATM 2 C C2 IMD . . . E 2 -5.218 19.259 -14.602 1 37.82 ? C2 IMD 185 B 1 HETATM 3 N N3 IMD . . . E 2 -5.945 19.515 -13.507 1 37.18 ? N3 IMD 185 B 1 HETATM 4 C C4 IMD . . . E 2 -7.228 19.152 -13.742 1 38.27 ? C4 IMD 185 B 1 HETATM 5 C C5 IMD . . . E 2 -7.276 18.678 -15.028 1 39.59 ? C5 IMD 185 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #