data_3MOM # _model_server_result.job_id 1eEiCzh24LA0DGQ4FrYk4Q _model_server_result.datetime_utc '2024-11-12 20:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":186}' # _entry.id 3MOM # _exptl.entry_id 3MOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.1 _cell.angle_gamma 90 _cell.entry_id 3MOM _cell.length_a 47.373 _cell.length_b 46.378 _cell.length_c 81.088 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 75 A TYR 75 1_555 D FE HEM . A HEM 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 C N1 IMD . A IMD 185 1_555 D FE HEM . A HEM 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 B OH TYR 75 B TYR 75 1_555 G FE HEM . B HEM 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 E N3 IMD . B IMD 185 1_555 G FE HEM . B HEM 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 3MOM _atom_sites.fract_transf_matrix[1][1] 0.021109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMD A 1 185 1 IMD IMD . D 3 HEM A 1 186 1 HEM HEM . E 2 IMD B 1 185 2 IMD IMD . F 2 IMD B 1 186 3 IMD IMD . G 3 HEM B 1 187 2 HEM HEM . H 4 HOH A 1 187 1 HOH HOH . H 4 HOH A 2 188 2 HOH HOH . H 4 HOH A 3 189 3 HOH HOH . H 4 HOH A 4 190 5 HOH HOH . H 4 HOH A 5 191 8 HOH HOH . H 4 HOH A 6 192 9 HOH HOH . H 4 HOH A 7 193 11 HOH HOH . H 4 HOH A 8 194 12 HOH HOH . H 4 HOH A 9 195 13 HOH HOH . H 4 HOH A 10 196 14 HOH HOH . H 4 HOH A 11 197 15 HOH HOH . H 4 HOH A 12 198 22 HOH HOH . H 4 HOH A 13 199 24 HOH HOH . H 4 HOH A 14 200 26 HOH HOH . H 4 HOH A 15 201 28 HOH HOH . H 4 HOH A 16 202 30 HOH HOH . H 4 HOH A 17 203 31 HOH HOH . H 4 HOH A 18 204 33 HOH HOH . H 4 HOH A 19 205 34 HOH HOH . H 4 HOH A 20 206 35 HOH HOH . H 4 HOH A 21 207 38 HOH HOH . H 4 HOH A 22 208 39 HOH HOH . H 4 HOH A 23 209 44 HOH HOH . H 4 HOH A 24 210 45 HOH HOH . H 4 HOH A 25 211 48 HOH HOH . H 4 HOH A 26 212 49 HOH HOH . H 4 HOH A 27 213 51 HOH HOH . H 4 HOH A 28 214 52 HOH HOH . H 4 HOH A 29 215 53 HOH HOH . H 4 HOH A 30 216 54 HOH HOH . H 4 HOH A 31 217 56 HOH HOH . H 4 HOH A 32 218 57 HOH HOH . H 4 HOH A 33 219 60 HOH HOH . H 4 HOH A 34 220 61 HOH HOH . H 4 HOH A 35 221 68 HOH HOH . I 4 HOH B 1 188 4 HOH HOH . I 4 HOH B 2 189 6 HOH HOH . I 4 HOH B 3 190 7 HOH HOH . I 4 HOH B 4 191 10 HOH HOH . I 4 HOH B 5 192 16 HOH HOH . I 4 HOH B 6 193 17 HOH HOH . I 4 HOH B 7 194 18 HOH HOH . I 4 HOH B 8 195 19 HOH HOH . I 4 HOH B 9 196 20 HOH HOH . I 4 HOH B 10 197 21 HOH HOH . I 4 HOH B 11 198 23 HOH HOH . I 4 HOH B 12 199 25 HOH HOH . I 4 HOH B 13 200 27 HOH HOH . I 4 HOH B 14 201 29 HOH HOH . I 4 HOH B 15 202 32 HOH HOH . I 4 HOH B 16 203 36 HOH HOH . I 4 HOH B 17 204 37 HOH HOH . I 4 HOH B 18 205 40 HOH HOH . I 4 HOH B 19 206 42 HOH HOH . I 4 HOH B 20 207 43 HOH HOH . I 4 HOH B 21 208 46 HOH HOH . I 4 HOH B 22 209 47 HOH HOH . I 4 HOH B 23 210 50 HOH HOH . I 4 HOH B 24 211 55 HOH HOH . I 4 HOH B 25 212 58 HOH HOH . I 4 HOH B 26 213 59 HOH HOH . I 4 HOH B 27 214 62 HOH HOH . I 4 HOH B 28 215 65 HOH HOH . I 4 HOH B 29 216 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 12.722 17.012 -4.764 1 39.02 ? CHA HEM 186 A 1 HETATM 2 C CHB HEM . . . D 3 9.086 17.048 -7.822 1 33.31 ? CHB HEM 186 A 1 HETATM 3 C CHC HEM . . . D 3 9.939 12.26 -8.405 1 31.68 ? CHC HEM 186 A 1 HETATM 4 C CHD HEM . . . D 3 12.911 12.107 -4.71 1 37.91 ? CHD HEM 186 A 1 HETATM 5 C C1A HEM . . . D 3 11.755 17.45 -5.619 1 37.75 ? C1A HEM 186 A 1 HETATM 6 C C2A HEM . . . D 3 11.48 18.817 -5.929 1 40.42 ? C2A HEM 186 A 1 HETATM 7 C C3A HEM . . . D 3 10.474 18.855 -6.797 1 38.83 ? C3A HEM 186 A 1 HETATM 8 C C4A HEM . . . D 3 10.081 17.505 -7.022 1 32.74 ? C4A HEM 186 A 1 HETATM 9 C CMA HEM . . . D 3 9.835 20.142 -7.405 1 38.72 ? CMA HEM 186 A 1 HETATM 10 C CAA HEM . . . D 3 12.285 20.032 -5.423 1 43.52 ? CAA HEM 186 A 1 HETATM 11 C CBA HEM . . . D 3 11.87 20.659 -4.11 1 48.03 ? CBA HEM 186 A 1 HETATM 12 C CGA HEM . . . D 3 12.367 22.099 -4.268 1 51.52 ? CGA HEM 186 A 1 HETATM 13 O O1A HEM . . . D 3 13.617 22.253 -4.428 1 50.08 ? O1A HEM 186 A 1 HETATM 14 O O2A HEM . . . D 3 11.516 23.063 -4.303 1 51.18 ? O2A HEM 186 A 1 HETATM 15 C C1B HEM . . . D 3 9.02 15.726 -8.267 1 31.19 ? C1B HEM 186 A 1 HETATM 16 C C2B HEM . . . D 3 8.17 15.237 -9.338 1 27.07 ? C2B HEM 186 A 1 HETATM 17 C C3B HEM . . . D 3 8.421 13.921 -9.467 1 31.03 ? C3B HEM 186 A 1 HETATM 18 C C4B HEM . . . D 3 9.452 13.541 -8.517 1 33.74 ? C4B HEM 186 A 1 HETATM 19 C CMB HEM . . . D 3 7.128 16.059 -10.178 1 29.03 ? CMB HEM 186 A 1 HETATM 20 C CAB HEM . . . D 3 7.812 12.91 -10.474 1 33.66 ? CAB HEM 186 A 1 HETATM 21 C CBB HEM . . . D 3 6.544 12.982 -10.876 1 35.64 ? CBB HEM 186 A 1 HETATM 22 C C1C HEM . . . D 3 10.751 11.778 -7.431 1 33.13 ? C1C HEM 186 A 1 HETATM 23 C C2C HEM . . . D 3 11.081 10.382 -7.179 1 31.68 ? C2C HEM 186 A 1 HETATM 24 C C3C HEM . . . D 3 11.904 10.325 -6.157 1 32.91 ? C3C HEM 186 A 1 HETATM 25 C C4C HEM . . . D 3 12.118 11.698 -5.743 1 35.39 ? C4C HEM 186 A 1 HETATM 26 C CMC HEM . . . D 3 10.521 9.215 -7.939 1 28.07 ? CMC HEM 186 A 1 HETATM 27 C CAC HEM . . . D 3 12.517 9.087 -5.475 1 35.03 ? CAC HEM 186 A 1 HETATM 28 C CBC HEM . . . D 3 12.879 7.992 -6.18 1 35.33 ? CBC HEM 186 A 1 HETATM 29 C C1D HEM . . . D 3 13.127 13.426 -4.42 1 38.16 ? C1D HEM 186 A 1 HETATM 30 C C2D HEM . . . D 3 14.029 13.866 -3.409 1 37.26 ? C2D HEM 186 A 1 HETATM 31 C C3D HEM . . . D 3 14.001 15.379 -3.42 1 39.62 ? C3D HEM 186 A 1 HETATM 32 C C4D HEM . . . D 3 13.049 15.714 -4.446 1 40.28 ? C4D HEM 186 A 1 HETATM 33 C CMD HEM . . . D 3 14.845 12.957 -2.511 1 37.59 ? CMD HEM 186 A 1 HETATM 34 C CAD HEM . . . D 3 14.78 16.335 -2.486 1 45.63 ? CAD HEM 186 A 1 HETATM 35 C CBD HEM . . . D 3 16.112 16.76 -3.133 1 50.37 ? CBD HEM 186 A 1 HETATM 36 C CGD HEM . . . D 3 16.649 17.986 -2.42 1 56.31 ? CGD HEM 186 A 1 HETATM 37 O O1D HEM . . . D 3 15.872 18.66 -1.642 1 59.15 ? O1D HEM 186 A 1 HETATM 38 O O2D HEM . . . D 3 17.867 18.289 -2.65 1 59.49 ? O2D HEM 186 A 1 HETATM 39 N NA HEM . . . D 3 10.883 16.685 -6.305 1 35.73 ? NA HEM 186 A 1 HETATM 40 N NB HEM . . . D 3 9.803 14.671 -7.771 1 31.44 ? NB HEM 186 A 1 HETATM 41 N NC HEM . . . D 3 11.422 12.567 -6.55 1 34.03 ? NC HEM 186 A 1 HETATM 42 N ND HEM . . . D 3 12.549 14.531 -5.034 1 38 ? ND HEM 186 A 1 HETATM 43 FE FE HEM . . . D 3 11.162 14.596 -6.461 1 34.91 ? FE HEM 186 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #