data_3MOM # _model_server_result.job_id cgU8ED_Is7M7pIgOX1GMYQ _model_server_result.datetime_utc '2024-11-12 20:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":187}' # _entry.id 3MOM # _exptl.entry_id 3MOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.1 _cell.angle_gamma 90 _cell.entry_id 3MOM _cell.length_a 47.373 _cell.length_b 46.378 _cell.length_c 81.088 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 75 A TYR 75 1_555 D FE HEM . A HEM 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 C N1 IMD . A IMD 185 1_555 D FE HEM . A HEM 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 B OH TYR 75 B TYR 75 1_555 G FE HEM . B HEM 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 E N3 IMD . B IMD 185 1_555 G FE HEM . B HEM 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 3MOM _atom_sites.fract_transf_matrix[1][1] 0.021109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMD A 1 185 1 IMD IMD . D 3 HEM A 1 186 1 HEM HEM . E 2 IMD B 1 185 2 IMD IMD . F 2 IMD B 1 186 3 IMD IMD . G 3 HEM B 1 187 2 HEM HEM . H 4 HOH A 1 187 1 HOH HOH . H 4 HOH A 2 188 2 HOH HOH . H 4 HOH A 3 189 3 HOH HOH . H 4 HOH A 4 190 5 HOH HOH . H 4 HOH A 5 191 8 HOH HOH . H 4 HOH A 6 192 9 HOH HOH . H 4 HOH A 7 193 11 HOH HOH . H 4 HOH A 8 194 12 HOH HOH . H 4 HOH A 9 195 13 HOH HOH . H 4 HOH A 10 196 14 HOH HOH . H 4 HOH A 11 197 15 HOH HOH . H 4 HOH A 12 198 22 HOH HOH . H 4 HOH A 13 199 24 HOH HOH . H 4 HOH A 14 200 26 HOH HOH . H 4 HOH A 15 201 28 HOH HOH . H 4 HOH A 16 202 30 HOH HOH . H 4 HOH A 17 203 31 HOH HOH . H 4 HOH A 18 204 33 HOH HOH . H 4 HOH A 19 205 34 HOH HOH . H 4 HOH A 20 206 35 HOH HOH . H 4 HOH A 21 207 38 HOH HOH . H 4 HOH A 22 208 39 HOH HOH . H 4 HOH A 23 209 44 HOH HOH . H 4 HOH A 24 210 45 HOH HOH . H 4 HOH A 25 211 48 HOH HOH . H 4 HOH A 26 212 49 HOH HOH . H 4 HOH A 27 213 51 HOH HOH . H 4 HOH A 28 214 52 HOH HOH . H 4 HOH A 29 215 53 HOH HOH . H 4 HOH A 30 216 54 HOH HOH . H 4 HOH A 31 217 56 HOH HOH . H 4 HOH A 32 218 57 HOH HOH . H 4 HOH A 33 219 60 HOH HOH . H 4 HOH A 34 220 61 HOH HOH . H 4 HOH A 35 221 68 HOH HOH . I 4 HOH B 1 188 4 HOH HOH . I 4 HOH B 2 189 6 HOH HOH . I 4 HOH B 3 190 7 HOH HOH . I 4 HOH B 4 191 10 HOH HOH . I 4 HOH B 5 192 16 HOH HOH . I 4 HOH B 6 193 17 HOH HOH . I 4 HOH B 7 194 18 HOH HOH . I 4 HOH B 8 195 19 HOH HOH . I 4 HOH B 9 196 20 HOH HOH . I 4 HOH B 10 197 21 HOH HOH . I 4 HOH B 11 198 23 HOH HOH . I 4 HOH B 12 199 25 HOH HOH . I 4 HOH B 13 200 27 HOH HOH . I 4 HOH B 14 201 29 HOH HOH . I 4 HOH B 15 202 32 HOH HOH . I 4 HOH B 16 203 36 HOH HOH . I 4 HOH B 17 204 37 HOH HOH . I 4 HOH B 18 205 40 HOH HOH . I 4 HOH B 19 206 42 HOH HOH . I 4 HOH B 20 207 43 HOH HOH . I 4 HOH B 21 208 46 HOH HOH . I 4 HOH B 22 209 47 HOH HOH . I 4 HOH B 23 210 50 HOH HOH . I 4 HOH B 24 211 55 HOH HOH . I 4 HOH B 25 212 58 HOH HOH . I 4 HOH B 26 213 59 HOH HOH . I 4 HOH B 27 214 62 HOH HOH . I 4 HOH B 28 215 65 HOH HOH . I 4 HOH B 29 216 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 3 -7.479 19.02 -9.976 1 31.67 ? CHA HEM 187 B 1 HETATM 2 C CHB HEM . . . G 3 -2.964 18.042 -11.134 1 31.13 ? CHB HEM 187 B 1 HETATM 3 C CHC HEM . . . G 3 -2.76 21.86 -14.071 1 30.27 ? CHC HEM 187 B 1 HETATM 4 C CHD HEM . . . G 3 -6.932 23.272 -12.188 1 30.12 ? CHD HEM 187 B 1 HETATM 5 C C1A HEM . . . G 3 -6.291 18.374 -10.09 1 32.14 ? C1A HEM 187 B 1 HETATM 6 C C2A HEM . . . G 3 -5.929 17.109 -9.502 1 32.46 ? C2A HEM 187 B 1 HETATM 7 C C3A HEM . . . G 3 -4.678 16.855 -9.849 1 31.68 ? C3A HEM 187 B 1 HETATM 8 C C4A HEM . . . G 3 -4.205 17.961 -10.622 1 31.8 ? C4A HEM 187 B 1 HETATM 9 C CMA HEM . . . G 3 -3.839 15.626 -9.489 1 31.12 ? CMA HEM 187 B 1 HETATM 10 C CAA HEM . . . G 3 -6.837 16.162 -8.685 1 31.67 ? CAA HEM 187 B 1 HETATM 11 C CBA HEM . . . G 3 -7.291 16.812 -7.395 1 31.43 ? CBA HEM 187 B 1 HETATM 12 C CGA HEM . . . G 3 -8.067 15.808 -6.596 1 32.8 ? CGA HEM 187 B 1 HETATM 13 O O1A HEM . . . G 3 -7.939 15.92 -5.36 1 32.27 ? O1A HEM 187 B 1 HETATM 14 O O2A HEM . . . G 3 -8.77 14.906 -7.156 1 29.57 ? O2A HEM 187 B 1 HETATM 15 C C1B HEM . . . G 3 -2.563 19.001 -12.006 1 33.44 ? C1B HEM 187 B 1 HETATM 16 C C2B HEM . . . G 3 -1.239 19.004 -12.526 1 32.3 ? C2B HEM 187 B 1 HETATM 17 C C3B HEM . . . G 3 -1.16 20.029 -13.324 1 30.8 ? C3B HEM 187 B 1 HETATM 18 C C4B HEM . . . G 3 -2.432 20.722 -13.367 1 30.76 ? C4B HEM 187 B 1 HETATM 19 C CMB HEM . . . G 3 -0.099 17.999 -12.209 1 34.83 ? CMB HEM 187 B 1 HETATM 20 C CAB HEM . . . G 3 0.15 20.34 -14.046 1 34.13 ? CAB HEM 187 B 1 HETATM 21 C CBB HEM . . . G 3 0.001 21.034 -15.148 1 37.53 ? CBB HEM 187 B 1 HETATM 22 C C1C HEM . . . G 3 -3.883 22.595 -13.823 1 28.91 ? C1C HEM 187 B 1 HETATM 23 C C2C HEM . . . G 3 -4.202 23.889 -14.405 1 28.03 ? C2C HEM 187 B 1 HETATM 24 C C3C HEM . . . G 3 -5.369 24.248 -13.856 1 29.14 ? C3C HEM 187 B 1 HETATM 25 C C4C HEM . . . G 3 -5.795 23.223 -12.928 1 29.17 ? C4C HEM 187 B 1 HETATM 26 C CMC HEM . . . G 3 -3.303 24.621 -15.433 1 25.09 ? CMC HEM 187 B 1 HETATM 27 C CAC HEM . . . G 3 -6.212 25.499 -14.082 1 30.6 ? CAC HEM 187 B 1 HETATM 28 C CBC HEM . . . G 3 -5.983 26.266 -15.143 1 34.12 ? CBC HEM 187 B 1 HETATM 29 C C1D HEM . . . G 3 -7.457 22.279 -11.447 1 31.18 ? C1D HEM 187 B 1 HETATM 30 C C2D HEM . . . G 3 -8.745 22.385 -10.782 1 31.35 ? C2D HEM 187 B 1 HETATM 31 C C3D HEM . . . G 3 -8.9 21.047 -10.102 1 32.35 ? C3D HEM 187 B 1 HETATM 32 C C4D HEM . . . G 3 -7.706 20.302 -10.405 1 31.35 ? C4D HEM 187 B 1 HETATM 33 C CMD HEM . . . G 3 -9.757 23.543 -10.712 1 28.66 ? CMD HEM 187 B 1 HETATM 34 C CAD HEM . . . G 3 -10.113 20.648 -9.273 1 34.92 ? CAD HEM 187 B 1 HETATM 35 C CBD HEM . . . G 3 -9.756 20.293 -7.867 1 39.17 ? CBD HEM 187 B 1 HETATM 36 C CGD HEM . . . G 3 -11.051 19.795 -7.258 1 44.06 ? CGD HEM 187 B 1 HETATM 37 O O1D HEM . . . G 3 -11.665 20.622 -6.543 1 40.37 ? O1D HEM 187 B 1 HETATM 38 O O2D HEM . . . G 3 -11.456 18.598 -7.502 1 45.82 ? O2D HEM 187 B 1 HETATM 39 N NA HEM . . . G 3 -5.2 18.881 -10.754 1 32.17 ? NA HEM 187 B 1 HETATM 40 N NB HEM . . . G 3 -3.278 20.083 -12.519 1 31.24 ? NB HEM 187 B 1 HETATM 41 N NC HEM . . . G 3 -4.877 22.23 -12.934 1 31.01 ? NC HEM 187 B 1 HETATM 42 N ND HEM . . . G 3 -6.873 21.055 -11.214 1 29.16 ? ND HEM 187 B 1 HETATM 43 FE FE HEM . . . G 3 -5.052 20.581 -11.869 1 33.49 ? FE HEM 187 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #