data_3MPD
#
_model_server_result.job_id            CQ5HnZyKk-E2GlNEfGoD4A 
_model_server_result.datetime_utc      '2025-08-03 01:59:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mpd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":148}' 
#
_entry.id    3MPD 
#
_exptl.entry_id    3MPD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3MPD 
_cell.length_a            111.33 
_cell.length_b            111.33 
_cell.length_c            111.33 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MPD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_645 -z+1,x-1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 111.33 -55.665 55.665 
3 'crystal symmetry operation' 11_556 y+1/2,-z+1/2,-x+1 0 1 0 0 0 -1 -1 0 0 55.665 55.665 111.33 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3MPD 
_atom_sites.fract_transf_matrix[1][1]    0.008982 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008982 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 148 1 EDO EDO . 
D 3 HOH A 1 149 1 HOH HOH . 
D 3 HOH A 2 150 2 HOH HOH . 
D 3 HOH A 3 151 151 HOH HOH . 
D 3 HOH A 4 152 3 HOH HOH . 
D 3 HOH A 5 153 153 HOH HOH . 
D 3 HOH A 6 154 5 HOH HOH . 
D 3 HOH A 7 155 155 HOH HOH . 
D 3 HOH A 8 156 6 HOH HOH . 
D 3 HOH A 9 157 8 HOH HOH . 
D 3 HOH A 10 158 10 HOH HOH . 
D 3 HOH A 11 159 12 HOH HOH . 
D 3 HOH A 12 160 16 HOH HOH . 
D 3 HOH A 13 161 17 HOH HOH . 
D 3 HOH A 14 162 18 HOH HOH . 
D 3 HOH A 15 163 163 HOH HOH . 
D 3 HOH A 16 164 164 HOH HOH . 
D 3 HOH A 17 165 165 HOH HOH . 
D 3 HOH A 18 166 166 HOH HOH . 
D 3 HOH A 19 167 167 HOH HOH . 
D 3 HOH A 20 168 168 HOH HOH . 
D 3 HOH A 21 169 169 HOH HOH . 
D 3 HOH A 22 170 170 HOH HOH . 
D 3 HOH A 23 171 31 HOH HOH . 
D 3 HOH A 24 172 172 HOH HOH . 
D 3 HOH A 25 173 32 HOH HOH . 
D 3 HOH A 26 174 33 HOH HOH . 
D 3 HOH A 27 175 35 HOH HOH . 
D 3 HOH A 28 176 39 HOH HOH . 
D 3 HOH A 29 177 41 HOH HOH . 
D 3 HOH A 30 178 42 HOH HOH . 
D 3 HOH A 31 179 179 HOH HOH . 
D 3 HOH A 32 180 180 HOH HOH . 
D 3 HOH A 33 181 181 HOH HOH . 
D 3 HOH A 34 182 182 HOH HOH . 
D 3 HOH A 35 183 183 HOH HOH . 
D 3 HOH A 36 184 184 HOH HOH . 
D 3 HOH A 37 185 44 HOH HOH . 
D 3 HOH A 38 186 46 HOH HOH . 
D 3 HOH A 39 187 47 HOH HOH . 
D 3 HOH A 40 188 48 HOH HOH . 
D 3 HOH A 41 189 50 HOH HOH . 
D 3 HOH A 42 190 51 HOH HOH . 
D 3 HOH A 43 191 53 HOH HOH . 
D 3 HOH A 44 192 54 HOH HOH . 
D 3 HOH A 45 193 55 HOH HOH . 
D 3 HOH A 46 194 60 HOH HOH . 
D 3 HOH A 47 195 62 HOH HOH . 
D 3 HOH A 48 196 63 HOH HOH . 
D 3 HOH A 49 197 64 HOH HOH . 
D 3 HOH A 50 198 66 HOH HOH . 
D 3 HOH A 51 199 67 HOH HOH . 
D 3 HOH A 52 200 68 HOH HOH . 
D 3 HOH A 53 201 69 HOH HOH . 
D 3 HOH A 54 202 70 HOH HOH . 
D 3 HOH A 55 203 73 HOH HOH . 
D 3 HOH A 56 204 74 HOH HOH . 
D 3 HOH A 57 205 77 HOH HOH . 
D 3 HOH A 58 206 78 HOH HOH . 
D 3 HOH A 59 207 207 HOH HOH . 
D 3 HOH A 60 208 208 HOH HOH . 
D 3 HOH A 61 209 209 HOH HOH . 
D 3 HOH A 62 210 210 HOH HOH . 
D 3 HOH A 63 211 211 HOH HOH . 
D 3 HOH A 64 212 212 HOH HOH . 
D 3 HOH A 65 213 82 HOH HOH . 
D 3 HOH A 66 214 214 HOH HOH . 
D 3 HOH A 67 215 86 HOH HOH . 
D 3 HOH A 68 216 216 HOH HOH . 
D 3 HOH A 69 217 217 HOH HOH . 
D 3 HOH A 70 218 87 HOH HOH . 
D 3 HOH A 71 219 219 HOH HOH . 
D 3 HOH A 72 220 220 HOH HOH . 
D 3 HOH A 73 221 221 HOH HOH . 
D 3 HOH A 74 222 222 HOH HOH . 
D 3 HOH A 75 223 223 HOH HOH . 
D 3 HOH A 76 224 88 HOH HOH . 
D 3 HOH A 77 225 89 HOH HOH . 
D 3 HOH A 78 226 91 HOH HOH . 
D 3 HOH A 79 227 96 HOH HOH . 
D 3 HOH A 80 228 97 HOH HOH . 
D 3 HOH A 81 229 98 HOH HOH . 
D 3 HOH A 82 230 102 HOH HOH . 
D 3 HOH A 83 231 105 HOH HOH . 
D 3 HOH A 84 232 107 HOH HOH . 
D 3 HOH A 85 233 108 HOH HOH . 
D 3 HOH A 86 234 109 HOH HOH . 
D 3 HOH A 87 235 110 HOH HOH . 
D 3 HOH A 88 236 118 HOH HOH . 
D 3 HOH A 89 237 119 HOH HOH . 
D 3 HOH A 90 238 120 HOH HOH . 
D 3 HOH A 91 239 121 HOH HOH . 
D 3 HOH A 92 240 122 HOH HOH . 
D 3 HOH A 93 241 124 HOH HOH . 
D 3 HOH A 94 242 125 HOH HOH . 
D 3 HOH A 95 243 126 HOH HOH . 
D 3 HOH A 96 244 127 HOH HOH . 
D 3 HOH A 97 245 131 HOH HOH . 
D 3 HOH A 98 246 135 HOH HOH . 
D 3 HOH A 99 247 138 HOH HOH . 
D 3 HOH A 100 248 145 HOH HOH . 
D 3 HOH A 101 249 146 HOH HOH . 
D 3 HOH A 102 250 160 HOH HOH . 
D 3 HOH A 103 251 161 HOH HOH . 
E 3 HOH B 1 148 4 HOH HOH . 
E 3 HOH B 2 149 149 HOH HOH . 
E 3 HOH B 3 150 150 HOH HOH . 
E 3 HOH B 4 151 7 HOH HOH . 
E 3 HOH B 5 152 152 HOH HOH . 
E 3 HOH B 6 153 9 HOH HOH . 
E 3 HOH B 7 154 11 HOH HOH . 
E 3 HOH B 8 155 13 HOH HOH . 
E 3 HOH B 9 156 156 HOH HOH . 
E 3 HOH B 10 157 14 HOH HOH . 
E 3 HOH B 11 158 15 HOH HOH . 
E 3 HOH B 12 159 159 HOH HOH . 
E 3 HOH B 13 162 19 HOH HOH . 
E 3 HOH B 14 163 20 HOH HOH . 
E 3 HOH B 15 164 21 HOH HOH . 
E 3 HOH B 16 165 22 HOH HOH . 
E 3 HOH B 17 166 23 HOH HOH . 
E 3 HOH B 18 167 24 HOH HOH . 
E 3 HOH B 19 168 25 HOH HOH . 
E 3 HOH B 20 169 26 HOH HOH . 
E 3 HOH B 21 170 27 HOH HOH . 
E 3 HOH B 22 171 171 HOH HOH . 
E 3 HOH B 23 172 28 HOH HOH . 
E 3 HOH B 24 173 173 HOH HOH . 
E 3 HOH B 25 174 174 HOH HOH . 
E 3 HOH B 26 175 175 HOH HOH . 
E 3 HOH B 27 176 29 HOH HOH . 
E 3 HOH B 28 177 177 HOH HOH . 
E 3 HOH B 29 178 30 HOH HOH . 
E 3 HOH B 30 179 34 HOH HOH . 
E 3 HOH B 31 180 36 HOH HOH . 
E 3 HOH B 32 181 37 HOH HOH . 
E 3 HOH B 33 182 38 HOH HOH . 
E 3 HOH B 34 183 40 HOH HOH . 
E 3 HOH B 35 184 43 HOH HOH . 
E 3 HOH B 36 185 45 HOH HOH . 
E 3 HOH B 37 186 186 HOH HOH . 
E 3 HOH B 38 187 187 HOH HOH . 
E 3 HOH B 39 188 188 HOH HOH . 
E 3 HOH B 40 189 49 HOH HOH . 
E 3 HOH B 41 190 190 HOH HOH . 
E 3 HOH B 42 191 191 HOH HOH . 
E 3 HOH B 43 192 192 HOH HOH . 
E 3 HOH B 44 193 193 HOH HOH . 
E 3 HOH B 45 194 194 HOH HOH . 
E 3 HOH B 46 195 195 HOH HOH . 
E 3 HOH B 47 196 196 HOH HOH . 
E 3 HOH B 48 197 197 HOH HOH . 
E 3 HOH B 49 198 198 HOH HOH . 
E 3 HOH B 50 199 199 HOH HOH . 
E 3 HOH B 51 200 200 HOH HOH . 
E 3 HOH B 52 201 201 HOH HOH . 
E 3 HOH B 53 202 202 HOH HOH . 
E 3 HOH B 54 203 203 HOH HOH . 
E 3 HOH B 55 204 204 HOH HOH . 
E 3 HOH B 56 205 205 HOH HOH . 
E 3 HOH B 57 206 206 HOH HOH . 
E 3 HOH B 58 207 52 HOH HOH . 
E 3 HOH B 59 208 56 HOH HOH . 
E 3 HOH B 60 209 57 HOH HOH . 
E 3 HOH B 61 210 58 HOH HOH . 
E 3 HOH B 62 211 59 HOH HOH . 
E 3 HOH B 63 212 61 HOH HOH . 
E 3 HOH B 64 213 213 HOH HOH . 
E 3 HOH B 65 214 65 HOH HOH . 
E 3 HOH B 66 215 215 HOH HOH . 
E 3 HOH B 67 216 71 HOH HOH . 
E 3 HOH B 68 217 72 HOH HOH . 
E 3 HOH B 69 218 218 HOH HOH . 
E 3 HOH B 70 219 75 HOH HOH . 
E 3 HOH B 71 220 76 HOH HOH . 
E 3 HOH B 72 221 79 HOH HOH . 
E 3 HOH B 73 222 80 HOH HOH . 
E 3 HOH B 74 223 81 HOH HOH . 
E 3 HOH B 75 224 224 HOH HOH . 
E 3 HOH B 76 225 225 HOH HOH . 
E 3 HOH B 77 226 226 HOH HOH . 
E 3 HOH B 78 227 227 HOH HOH . 
E 3 HOH B 79 228 228 HOH HOH . 
E 3 HOH B 80 229 229 HOH HOH . 
E 3 HOH B 81 230 230 HOH HOH . 
E 3 HOH B 82 231 83 HOH HOH . 
E 3 HOH B 83 232 85 HOH HOH . 
E 3 HOH B 84 233 92 HOH HOH . 
E 3 HOH B 85 234 93 HOH HOH . 
E 3 HOH B 86 235 94 HOH HOH . 
E 3 HOH B 87 236 95 HOH HOH . 
E 3 HOH B 88 237 99 HOH HOH . 
E 3 HOH B 89 238 100 HOH HOH . 
E 3 HOH B 90 239 101 HOH HOH . 
E 3 HOH B 91 240 103 HOH HOH . 
E 3 HOH B 92 241 104 HOH HOH . 
E 3 HOH B 93 242 106 HOH HOH . 
E 3 HOH B 94 243 111 HOH HOH . 
E 3 HOH B 95 244 112 HOH HOH . 
E 3 HOH B 96 245 113 HOH HOH . 
E 3 HOH B 97 246 114 HOH HOH . 
E 3 HOH B 98 247 115 HOH HOH . 
E 3 HOH B 99 248 116 HOH HOH . 
E 3 HOH B 100 249 117 HOH HOH . 
E 3 HOH B 101 250 123 HOH HOH . 
E 3 HOH B 102 251 128 HOH HOH . 
E 3 HOH B 103 252 129 HOH HOH . 
E 3 HOH B 104 253 132 HOH HOH . 
E 3 HOH B 105 254 133 HOH HOH . 
E 3 HOH B 106 255 134 HOH HOH . 
E 3 HOH B 107 256 136 HOH HOH . 
E 3 HOH B 108 257 137 HOH HOH . 
E 3 HOH B 109 258 139 HOH HOH . 
E 3 HOH B 110 259 140 HOH HOH . 
E 3 HOH B 111 260 141 HOH HOH . 
E 3 HOH B 112 261 143 HOH HOH . 
E 3 HOH B 113 262 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 25.875 -16.323 48.207 1 49.53 ? C1 EDO 148 A 1 
HETATM 2 O O1 EDO . . . C 2 26.857 -15.283 48.114 1 54.39 ? O1 EDO 148 A 1 
HETATM 3 C C2 EDO . . . C 2 25.8 -16.707 49.673 1 47.56 ? C2 EDO 148 A 1 
HETATM 4 O O2 EDO . . . C 2 24.666 -16.056 50.272 1 45.47 ? O2 EDO 148 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           456 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#