data_3MPN
#
_model_server_result.job_id            SGZ2YsAwz95BMmzNee-TQg 
_model_server_result.datetime_utc      '2024-11-23 09:41:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mpn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1}' 
#
_entry.id    3MPN 
#
_exptl.entry_id    3MPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.35 
_cell.angle_gamma         90 
_cell.entry_id            3MPN 
_cell.length_a            87.261 
_cell.length_b            86.222 
_cell.length_c            80.636 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 79.742541 0 80.284726 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 173 A CYS 177 1_555 D S1 MTN . A MTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 A O GLY 16 A GLY 20 1_555 J NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc2 A O ALA 18 A ALA 22 1_555 K NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc3 A O VAL 19 A VAL 23 1_555 J NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc4 A OD1 ASN 23 A ASN 27 1_555 K NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc5 A O THR 250 A THR 254 1_555 K NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc6 A OG1 THR 250 A THR 254 1_555 K NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc7 A OD1 ASN 282 A ASN 286 1_555 K NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc8 A O ALA 347 A ALA 351 1_555 J NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc9 A OG1 THR 350 A THR 354 1_555 J NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc10 A OG SER 351 A SER 355 1_555 J NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc11 C OXT LEU . A LEU 601 1_555 K NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3MPN 
_atom_sites.fract_transf_matrix[1][1]    0.01146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001073 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011598 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 701 701 BOG BOG . 
C 3 LEU A 1 601 601 LEU LEU . 
D 4 MTN A 1 801 801 MTN MTN . 
E 5 CL A 1 512 512 CL CL . 
F 2 BOG A 1 703 703 BOG BOG . 
G 2 BOG A 1 704 704 BOG BOG . 
H 2 BOG A 1 705 705 BOG BOG . 
I 2 BOG A 1 702 702 BOG BOG . 
J 6 NA A 1 751 751 NA NA . 
K 6 NA A 1 752 752 NA NA . 
L 2 BOG A 1 1 1 BOG BOG . 
M 7 HOH A 1 2 2 HOH HOH . 
M 7 HOH A 2 3 3 HOH HOH . 
M 7 HOH A 3 4 4 HOH HOH . 
M 7 HOH A 4 513 513 HOH HOH . 
M 7 HOH A 5 514 514 HOH HOH . 
M 7 HOH A 6 515 515 HOH HOH . 
M 7 HOH A 7 516 516 HOH HOH . 
M 7 HOH A 8 517 517 HOH HOH . 
M 7 HOH A 9 518 518 HOH HOH . 
M 7 HOH A 10 519 519 HOH HOH . 
M 7 HOH A 11 520 520 HOH HOH . 
M 7 HOH A 12 521 521 HOH HOH . 
M 7 HOH A 13 522 522 HOH HOH . 
M 7 HOH A 14 523 523 HOH HOH . 
M 7 HOH A 15 524 524 HOH HOH . 
M 7 HOH A 16 525 525 HOH HOH . 
M 7 HOH A 17 526 526 HOH HOH . 
M 7 HOH A 18 527 527 HOH HOH . 
M 7 HOH A 19 528 528 HOH HOH . 
M 7 HOH A 20 529 529 HOH HOH . 
M 7 HOH A 21 530 530 HOH HOH . 
M 7 HOH A 22 531 531 HOH HOH . 
M 7 HOH A 23 532 532 HOH HOH . 
M 7 HOH A 24 533 533 HOH HOH . 
M 7 HOH A 25 534 534 HOH HOH . 
M 7 HOH A 26 535 535 HOH HOH . 
M 7 HOH A 27 536 536 HOH HOH . 
M 7 HOH A 28 537 537 HOH HOH . 
M 7 HOH A 29 538 538 HOH HOH . 
M 7 HOH A 30 539 539 HOH HOH . 
M 7 HOH A 31 540 540 HOH HOH . 
M 7 HOH A 32 541 541 HOH HOH . 
M 7 HOH A 33 542 542 HOH HOH . 
M 7 HOH A 34 543 543 HOH HOH . 
M 7 HOH A 35 544 544 HOH HOH . 
M 7 HOH A 36 545 545 HOH HOH . 
M 7 HOH A 37 546 546 HOH HOH . 
M 7 HOH A 38 547 547 HOH HOH . 
M 7 HOH A 39 548 548 HOH HOH . 
M 7 HOH A 40 549 549 HOH HOH . 
M 7 HOH A 41 550 550 HOH HOH . 
M 7 HOH A 42 551 551 HOH HOH . 
M 7 HOH A 43 552 552 HOH HOH . 
M 7 HOH A 44 553 553 HOH HOH . 
M 7 HOH A 45 554 554 HOH HOH . 
M 7 HOH A 46 555 555 HOH HOH . 
M 7 HOH A 47 556 556 HOH HOH . 
M 7 HOH A 48 557 557 HOH HOH . 
M 7 HOH A 49 558 558 HOH HOH . 
M 7 HOH A 50 559 559 HOH HOH . 
M 7 HOH A 51 560 560 HOH HOH . 
M 7 HOH A 52 561 561 HOH HOH . 
M 7 HOH A 53 562 562 HOH HOH . 
M 7 HOH A 54 563 563 HOH HOH . 
M 7 HOH A 55 564 564 HOH HOH . 
M 7 HOH A 56 565 565 HOH HOH . 
M 7 HOH A 57 566 566 HOH HOH . 
M 7 HOH A 58 567 567 HOH HOH . 
M 7 HOH A 59 568 568 HOH HOH . 
M 7 HOH A 60 569 569 HOH HOH . 
M 7 HOH A 61 570 570 HOH HOH . 
M 7 HOH A 62 571 571 HOH HOH . 
M 7 HOH A 63 572 572 HOH HOH . 
M 7 HOH A 64 573 573 HOH HOH . 
M 7 HOH A 65 574 574 HOH HOH . 
M 7 HOH A 66 575 575 HOH HOH . 
M 7 HOH A 67 576 576 HOH HOH . 
M 7 HOH A 68 577 577 HOH HOH . 
M 7 HOH A 69 578 578 HOH HOH . 
M 7 HOH A 70 579 579 HOH HOH . 
M 7 HOH A 71 580 580 HOH HOH . 
M 7 HOH A 72 581 581 HOH HOH . 
M 7 HOH A 73 582 582 HOH HOH . 
M 7 HOH A 74 583 583 HOH HOH . 
M 7 HOH A 75 584 584 HOH HOH . 
M 7 HOH A 76 585 585 HOH HOH . 
M 7 HOH A 77 586 586 HOH HOH . 
M 7 HOH A 78 587 587 HOH HOH . 
M 7 HOH A 79 588 588 HOH HOH . 
M 7 HOH A 80 589 589 HOH HOH . 
M 7 HOH A 81 590 590 HOH HOH . 
M 7 HOH A 82 591 591 HOH HOH . 
M 7 HOH A 83 592 592 HOH HOH . 
M 7 HOH A 84 593 593 HOH HOH . 
M 7 HOH A 85 594 594 HOH HOH . 
M 7 HOH A 86 595 595 HOH HOH . 
M 7 HOH A 87 596 596 HOH HOH . 
M 7 HOH A 88 597 597 HOH HOH . 
M 7 HOH A 89 598 598 HOH HOH . 
M 7 HOH A 90 599 599 HOH HOH . 
M 7 HOH A 91 600 600 HOH HOH . 
M 7 HOH A 92 602 602 HOH HOH . 
M 7 HOH A 93 603 603 HOH HOH . 
M 7 HOH A 94 604 604 HOH HOH . 
M 7 HOH A 95 605 605 HOH HOH . 
M 7 HOH A 96 606 606 HOH HOH . 
M 7 HOH A 97 607 607 HOH HOH . 
M 7 HOH A 98 608 608 HOH HOH . 
M 7 HOH A 99 609 609 HOH HOH . 
M 7 HOH A 100 610 610 HOH HOH . 
M 7 HOH A 101 611 611 HOH HOH . 
M 7 HOH A 102 612 612 HOH HOH . 
M 7 HOH A 103 613 613 HOH HOH . 
M 7 HOH A 104 614 614 HOH HOH . 
M 7 HOH A 105 615 615 HOH HOH . 
M 7 HOH A 106 616 616 HOH HOH . 
M 7 HOH A 107 617 617 HOH HOH . 
M 7 HOH A 108 618 618 HOH HOH . 
M 7 HOH A 109 619 619 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 BOG . . . L 2 23.854 57.289 36.609 1 55.5 ? O1 BOG 1 A 1 
HETATM 2 C C1' BOG . . . L 2 24.772 56.417 37.313 1 53.76 ? C1' BOG 1 A 1 
HETATM 3 C C2' BOG . . . L 2 25.473 55.398 36.392 1 50.73 ? C2' BOG 1 A 1 
HETATM 4 C C3' BOG . . . L 2 25.495 54.034 37.069 1 50.25 ? C3' BOG 1 A 1 
HETATM 5 C C4' BOG . . . L 2 26.631 53.112 36.644 1 48.8 ? C4' BOG 1 A 1 
HETATM 6 C C5' BOG . . . L 2 26.786 51.927 37.598 1 45.94 ? C5' BOG 1 A 1 
HETATM 7 C C6' BOG . . . L 2 28.121 51.23 37.382 1 44.94 ? C6' BOG 1 A 1 
HETATM 8 C C7' BOG . . . L 2 28.323 49.933 38.177 1 43.5 ? C7' BOG 1 A 1 
HETATM 9 C C8' BOG . . . L 2 28.97 48.843 37.328 1 38.84 ? C8' BOG 1 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#