data_3MQ1
#
_model_server_result.job_id            B2La3zSKlP73BiR-Ztwpag 
_model_server_result.datetime_utc      '2025-09-04 17:02:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mq1 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":201}' 
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_entry.id    3MQ1 
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_exptl.entry_id    3MQ1 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3MQ1 
_cell.length_a            46.78 
_cell.length_b            96.57 
_cell.length_c            167.89 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3MQ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
E,F,JA,KA,LA,MA,NA,OA,TA,UA 1 1 
A,B,C,D,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,PA,QA,RA,SA 1 2 
A,B,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,PA,QA 2 2 
C,D,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,RA,SA 3 2 
E,F,JA,KA,LA,MA,NA,OA,TA,UA 4 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'crystal symmetry operation' 2_665 -x+3/2,-y+1,z+1/2 -1 0 0 0 -1 0 0 0 1 70.17 96.57 83.945 
2 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
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loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 JA N N 
? 3 KA N N 
? 3 LA N N 
? 3 MA N N 
? 3 NA N N 
? 3 OA N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 245 n n 
C1 H1C1 MRD sing 246 n n 
C1 H1C2 MRD sing 247 n n 
C1 H1C3 MRD sing 248 n n 
C2 O2 MRD sing 249 n n 
C2 CM MRD sing 250 n n 
C2 C3 MRD sing 251 n n 
O2 H2 MRD sing 252 n n 
CM HMC1 MRD sing 253 n n 
CM HMC2 MRD sing 254 n n 
CM HMC3 MRD sing 255 n n 
C3 C4 MRD sing 256 n n 
C3 H3C1 MRD sing 257 n n 
C3 H3C2 MRD sing 258 n n 
C4 O4 MRD sing 259 n n 
C4 C5 MRD sing 260 n n 
C4 H4 MRD sing 261 n n 
O4 HA MRD sing 262 n n 
C5 H5C1 MRD sing 263 n n 
C5 H5C2 MRD sing 264 n n 
C5 H5C3 MRD sing 265 n n 
#
_atom_sites.entry_id                     3MQ1 
_atom_sites.fract_transf_matrix[1][1]    0.021377 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010355 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 MPD A 1 201 201 MPD MPD . 
H 3 MRD A 1 202 202 MRD MRD . 
I 2 MPD A 1 203 203 MPD MPD . 
J 2 MPD A 1 204 204 MPD MPD . 
K 3 MRD A 1 207 207 MRD MRD . 
L 2 MPD A 1 208 208 MPD MPD . 
M 2 MPD A 1 209 209 MPD MPD . 
N 2 MPD A 1 210 210 MPD MPD . 
O 2 MPD A 1 200 200 MPD MPD . 
P 3 MRD A 1 133 202 MRD MRD . 
Q 2 MPD A 1 206 206 MPD MPD . 
R 3 MRD A 1 134 207 MRD MRD . 
S 2 MPD B 1 200 200 MPD MPD . 
T 3 MRD B 1 205 205 MRD MRD . 
U 4 PO4 B 1 213 213 PO4 PO4 . 
V 3 MRD B 1 201 201 MRD MRD . 
W 2 MPD B 1 203 203 MPD MPD . 
X 3 MRD B 1 204 204 MRD MRD . 
Y 2 MPD B 1 133 205 MPD MPD . 
Z 2 MPD C 1 212 212 MPD MPD . 
AA 2 MPD C 1 200 200 MPD MPD . 
BA 3 MRD C 1 201 201 MRD MRD . 
CA 3 MRD C 1 202 202 MRD MRD . 
DA 3 MRD C 1 203 203 MRD MRD . 
EA 3 MRD C 1 204 204 MRD MRD . 
FA 2 MPD C 1 208 208 MPD MPD . 
GA 2 MPD D 1 206 206 MPD MPD . 
HA 2 MPD D 1 207 207 MPD MPD . 
IA 2 MPD D 1 201 201 MPD MPD . 
JA 3 MRD E 1 200 200 MRD MRD . 
KA 3 MRD E 1 201 201 MRD MRD . 
LA 3 MRD E 1 202 202 MRD MRD . 
MA 3 MRD E 1 203 203 MRD MRD . 
NA 3 MRD F 1 204 204 MRD MRD . 
OA 3 MRD F 1 200 200 MRD MRD . 
PA 5 HOH A 1 213 213 HOH HOH . 
PA 5 HOH A 2 214 214 HOH HOH . 
PA 5 HOH A 3 215 215 HOH HOH . 
PA 5 HOH A 4 216 216 HOH HOH . 
PA 5 HOH A 5 217 217 HOH HOH . 
PA 5 HOH A 6 218 218 HOH HOH . 
PA 5 HOH A 7 219 219 HOH HOH . 
PA 5 HOH A 8 220 220 HOH HOH . 
PA 5 HOH A 9 221 221 HOH HOH . 
PA 5 HOH A 10 222 222 HOH HOH . 
PA 5 HOH A 11 223 223 HOH HOH . 
PA 5 HOH A 12 224 209 HOH HOH . 
PA 5 HOH A 13 225 217 HOH HOH . 
QA 5 HOH B 1 210 210 HOH HOH . 
QA 5 HOH B 2 211 211 HOH HOH . 
QA 5 HOH B 3 212 212 HOH HOH . 
QA 5 HOH B 4 214 214 HOH HOH . 
QA 5 HOH B 5 215 215 HOH HOH . 
QA 5 HOH B 6 216 216 HOH HOH . 
QA 5 HOH B 7 217 203 HOH HOH . 
QA 5 HOH B 8 218 218 HOH HOH . 
RA 5 HOH C 1 209 209 HOH HOH . 
RA 5 HOH C 2 210 210 HOH HOH . 
RA 5 HOH C 3 211 211 HOH HOH . 
RA 5 HOH C 4 213 213 HOH HOH . 
RA 5 HOH C 5 214 214 HOH HOH . 
RA 5 HOH C 6 215 212 HOH HOH . 
SA 5 HOH D 1 202 202 HOH HOH . 
SA 5 HOH D 2 203 203 HOH HOH . 
SA 5 HOH D 3 204 207 HOH HOH . 
SA 5 HOH D 4 205 205 HOH HOH . 
SA 5 HOH D 5 208 208 HOH HOH . 
SA 5 HOH D 6 209 209 HOH HOH . 
SA 5 HOH D 7 210 210 HOH HOH . 
SA 5 HOH D 8 212 212 HOH HOH . 
SA 5 HOH D 9 213 213 HOH HOH . 
TA 5 HOH E 1 205 205 HOH HOH . 
TA 5 HOH E 2 206 206 HOH HOH . 
TA 5 HOH E 3 207 207 HOH HOH . 
TA 5 HOH E 4 208 208 HOH HOH . 
TA 5 HOH E 5 209 209 HOH HOH . 
TA 5 HOH E 6 210 210 HOH HOH . 
UA 5 HOH F 1 202 202 HOH HOH . 
UA 5 HOH F 2 203 204 HOH HOH . 
UA 5 HOH F 3 205 205 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . BA 3 44.699 37.572 105.789 1 84.31 ? C1 MRD 201 C 1 
HETATM 2 C C2 MRD . . . BA 3 43.236 37.148 105.758 1 94.79 ? C2 MRD 201 C 1 
HETATM 3 O O2 MRD . . . BA 3 43.084 35.967 106.583 1 92.1 ? O2 MRD 201 C 1 
HETATM 4 C CM MRD . . . BA 3 42.35 38.254 106.315 1 104.94 ? CM MRD 201 C 1 
HETATM 5 C C3 MRD . . . BA 3 42.8 36.796 104.339 1 92.48 ? C3 MRD 201 C 1 
HETATM 6 C C4 MRD . . . BA 3 43.319 35.435 103.88 1 91.42 ? C4 MRD 201 C 1 
HETATM 7 O O4 MRD . . . BA 3 44.716 35.348 104.045 1 94.13 ? O4 MRD 201 C 1 
HETATM 8 C C5 MRD . . . BA 3 42.978 35.198 102.413 1 107.22 ? C5 MRD 201 C 1 
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_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
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