data_3MQ4 # _model_server_result.job_id kTyz4QP5u4MWTqmBUGsDNA _model_server_result.datetime_utc '2024-11-22 22:47:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":514}' # _entry.id 3MQ4 # _exptl.entry_id 3MQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MQ4 _cell.length_a 54.673 _cell.length_b 131.159 _cell.length_c 140.644 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -70.322 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 67 1_555 A SG CYS 77 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 342 A CYS 374 1_555 A SG CYS 358 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 398 A CYS 430 1_555 A SG CYS 405 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 B MG MG . A MG 1 1_555 A O ILE 57 A ILE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 B MG MG . A MG 1 1_555 A O ASP 60 A ASP 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc3 B MG MG . A MG 1 1_555 A O LEU 63 A LEU 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? # _chem_comp.formula 'C20 H19 N O5' _chem_comp.formula_weight 353.369 _chem_comp.id Z99 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(1S,2S)-2-[(2S)-2-amino-1-hydroxy-1-oxo-3-(9H-xanthen-9-yl)propan-2-yl]cyclopropane-1-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CAY Z99 sing 374 n n NAA HNAA Z99 sing 375 n n NAA HNAB Z99 sing 376 n n OAB CAQ Z99 doub 377 n n CAR OAC Z99 sing 378 n n OAC HOAC Z99 sing 379 n n CAQ OAD Z99 sing 380 n n OAD HOAD Z99 sing 381 n n OAE CAR Z99 doub 382 n n CAH CAF Z99 doub 383 n y CAF CAJ Z99 sing 384 n y CAF HAF Z99 sing 385 n n CAI CAG Z99 doub 386 n y CAG CAK Z99 sing 387 n y CAG HAG Z99 sing 388 n n CAL CAH Z99 sing 389 n y CAH HAH Z99 sing 390 n n CAM CAI Z99 sing 391 n y CAI HAI Z99 sing 392 n n CAS CAJ Z99 doub 393 n y CAJ HAJ Z99 sing 394 n n CAT CAK Z99 doub 395 n y CAK HAK Z99 sing 396 n n CAL CAU Z99 doub 397 n y CAL HAL Z99 sing 398 n n CAM CAV Z99 doub 399 n y CAM HAM Z99 sing 400 n n CAY CAN Z99 sing 401 n n CAN CAW Z99 sing 402 n n CAN HAN Z99 sing 403 n n CAN HANA Z99 sing 404 n n CAZ CAO Z99 sing 405 n n CAO CAX Z99 sing 406 n n CAO HAO Z99 sing 407 n n CAO HAOA Z99 sing 408 n n CAS OAP Z99 sing 409 n n CAT OAP Z99 sing 410 n n CAQ CAX Z99 sing 411 n n CAY CAR Z99 sing 412 n n CAU CAS Z99 sing 413 n y CAV CAT Z99 sing 414 n y CAW CAU Z99 sing 415 n n CAW CAV Z99 sing 416 n n CAW HAW Z99 sing 417 n n CAZ CAX Z99 sing 418 n n CAX HAX Z99 sing 419 n n CAZ CAY Z99 sing 420 n n CAZ HAZ Z99 sing 421 n n # _atom_sites.entry_id 3MQ4 _atom_sites.fract_transf_matrix[1][1] 0.018291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1 1 MG MG . C 3 Z99 A 1 514 514 Z99 Z99 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA Z99 . . . C 3 -17.084 -39.8 -20.459 1 101.09 ? NAA Z99 514 A 1 HETATM 2 O OAB Z99 . . . C 3 -18.347 -35.044 -21.017 1 100.78 ? OAB Z99 514 A 1 HETATM 3 O OAC Z99 . . . C 3 -16.336 -39.469 -24.321 1 97.88 ? OAC Z99 514 A 1 HETATM 4 O OAD Z99 . . . C 3 -18.301 -36.877 -19.421 1 101 ? OAD Z99 514 A 1 HETATM 5 O OAE Z99 . . . C 3 -15.186 -40.228 -22.614 1 100.82 ? OAE Z99 514 A 1 HETATM 6 C CAF Z99 . . . C 3 -18.06 -41.972 -26.93 1 112.52 ? CAF Z99 514 A 1 HETATM 7 C CAG Z99 . . . C 3 -22.771 -43.24 -21.968 1 119.98 ? CAG Z99 514 A 1 HETATM 8 C CAH Z99 . . . C 3 -16.981 -42.496 -26.115 1 110.85 ? CAH Z99 514 A 1 HETATM 9 C CAI Z99 . . . C 3 -21.752 -43.773 -21.051 1 117.22 ? CAI Z99 514 A 1 HETATM 10 C CAJ Z99 . . . C 3 -19.299 -41.497 -26.371 1 112.9 ? CAJ Z99 514 A 1 HETATM 11 C CAK Z99 . . . C 3 -22.421 -42.343 -23.091 1 119.55 ? CAK Z99 514 A 1 HETATM 12 C CAL Z99 . . . C 3 -17.091 -42.58 -24.722 1 109.83 ? CAL Z99 514 A 1 HETATM 13 C CAM Z99 . . . C 3 -20.358 -43.418 -21.203 1 113.99 ? CAM Z99 514 A 1 HETATM 14 C CAN Z99 . . . C 3 -18.54 -40.589 -22.184 1 104.72 ? CAN Z99 514 A 1 HETATM 15 C CAO Z99 . . . C 3 -18.3 -37.288 -23.052 1 100.26 ? CAO Z99 514 A 1 HETATM 16 O OAP Z99 . . . C 3 -20.703 -41.101 -24.367 1 114.02 ? OAP Z99 514 A 1 HETATM 17 C CAQ Z99 . . . C 3 -18.444 -36.307 -20.6 1 100.96 ? CAQ Z99 514 A 1 HETATM 18 C CAR Z99 . . . C 3 -16.223 -39.775 -23.06 1 100.1 ? CAR Z99 514 A 1 HETATM 19 C CAS Z99 . . . C 3 -19.47 -41.559 -24.968 1 112.78 ? CAS Z99 514 A 1 HETATM 20 C CAT Z99 . . . C 3 -21.053 -41.964 -23.297 1 115.6 ? CAT Z99 514 A 1 HETATM 21 C CAU Z99 . . . C 3 -18.315 -42.117 -24.116 1 110.93 ? CAU Z99 514 A 1 HETATM 22 C CAV Z99 . . . C 3 -19.981 -42.533 -22.314 1 113.06 ? CAV Z99 514 A 1 HETATM 23 C CAW Z99 . . . C 3 -18.493 -42.14 -22.536 1 108.92 ? CAW Z99 514 A 1 HETATM 24 C CAX Z99 . . . C 3 -18.794 -37.365 -21.636 1 100.65 ? CAX Z99 514 A 1 HETATM 25 C CAY Z99 . . . C 3 -17.356 -39.613 -21.96 1 101.52 ? CAY Z99 514 A 1 HETATM 26 C CAZ Z99 . . . C 3 -17.518 -38.049 -22.007 1 99.22 ? CAZ Z99 514 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #