data_3MQI
#
_model_server_result.job_id            amTz8MLt05JCRFfntqxpWg 
_model_server_result.datetime_utc      '2024-12-22 06:32:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mqi 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":0}' 
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_entry.id    3MQI 
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_exptl.entry_id    3MQI 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              75.11 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'trimethylamine oxide' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          93.17 
_cell.angle_gamma         90 
_cell.entry_id            3MQI 
_cell.length_a            86.291 
_cell.length_b            57.073 
_cell.length_c            69.14 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3MQI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,K,L 1 1 
C,H,I,J,M 2 1,2 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D HG EMC . A EMC 1 1_555 A SG CYS 80 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc2 F HG EMC . B EMC 4 1_555 B SG CYS 8 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc3 G HG EMC . B EMC 5 1_555 B SG CYS 80 B CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc4 H HG EMC . C EMC 3 1_555 C SG CYS 80 C CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc5 I HG EMC . C EMC 6 1_555 C SG CYS 8 C CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
#
_chem_comp.formula           'C3 H9 N O' 
_chem_comp.formula_weight    75.11 
_chem_comp.id                TMO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'trimethylamine oxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA NAC TMO sing 313 n n 
CAA HAA TMO sing 314 n n 
CAA HAAA TMO sing 315 n n 
CAA HAAB TMO sing 316 n n 
NAC CAD TMO sing 317 n n 
NAC CAB TMO sing 318 n n 
NAC OAE TMO sing 319 n n 
CAD HAD TMO sing 320 n n 
CAD HADA TMO sing 321 n n 
CAD HADB TMO sing 322 n n 
CAB HAB TMO sing 323 n n 
CAB HABA TMO sing 324 n n 
CAB HABB TMO sing 325 n n 
#
_atom_sites.entry_id                     3MQI 
_atom_sites.fract_transf_matrix[1][1]    0.011589 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000641 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017521 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014486 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 EMC A 1 1 1 EMC EMC . 
E 2 EMC A 1 2 2 EMC EMC . 
F 2 EMC B 1 4 4 EMC EMC . 
G 2 EMC B 1 5 5 EMC EMC . 
H 2 EMC C 1 3 3 EMC EMC . 
I 2 EMC C 1 6 6 EMC EMC . 
J 3 TMO C 1 0 0 TMO TMO . 
K 4 HOH A 1 3 3 HOH HOH . 
K 4 HOH A 2 7 7 HOH HOH . 
K 4 HOH A 3 11 11 HOH HOH . 
K 4 HOH A 4 15 15 HOH HOH . 
K 4 HOH A 5 16 16 HOH HOH . 
K 4 HOH A 6 21 21 HOH HOH . 
K 4 HOH A 7 22 22 HOH HOH . 
K 4 HOH A 8 23 23 HOH HOH . 
K 4 HOH A 9 24 24 HOH HOH . 
K 4 HOH A 10 28 28 HOH HOH . 
K 4 HOH A 11 31 31 HOH HOH . 
K 4 HOH A 12 35 35 HOH HOH . 
K 4 HOH A 13 37 37 HOH HOH . 
K 4 HOH A 14 41 41 HOH HOH . 
K 4 HOH A 15 51 51 HOH HOH . 
K 4 HOH A 16 52 52 HOH HOH . 
K 4 HOH A 17 53 53 HOH HOH . 
K 4 HOH A 18 58 58 HOH HOH . 
K 4 HOH A 19 59 59 HOH HOH . 
K 4 HOH A 20 61 61 HOH HOH . 
K 4 HOH A 21 65 65 HOH HOH . 
K 4 HOH A 22 66 66 HOH HOH . 
K 4 HOH A 23 70 70 HOH HOH . 
K 4 HOH A 24 73 73 HOH HOH . 
K 4 HOH A 25 93 93 HOH HOH . 
K 4 HOH A 26 94 94 HOH HOH . 
K 4 HOH A 27 95 95 HOH HOH . 
L 4 HOH B 1 2 2 HOH HOH . 
L 4 HOH B 2 6 6 HOH HOH . 
L 4 HOH B 3 12 12 HOH HOH . 
L 4 HOH B 4 13 13 HOH HOH . 
L 4 HOH B 5 14 14 HOH HOH . 
L 4 HOH B 6 19 19 HOH HOH . 
L 4 HOH B 7 25 25 HOH HOH . 
L 4 HOH B 8 26 26 HOH HOH . 
L 4 HOH B 9 27 27 HOH HOH . 
L 4 HOH B 10 29 29 HOH HOH . 
L 4 HOH B 11 30 30 HOH HOH . 
L 4 HOH B 12 32 32 HOH HOH . 
L 4 HOH B 13 34 34 HOH HOH . 
L 4 HOH B 14 40 40 HOH HOH . 
L 4 HOH B 15 44 44 HOH HOH . 
L 4 HOH B 16 45 45 HOH HOH . 
L 4 HOH B 17 46 46 HOH HOH . 
L 4 HOH B 18 50 50 HOH HOH . 
L 4 HOH B 19 57 57 HOH HOH . 
L 4 HOH B 20 63 63 HOH HOH . 
L 4 HOH B 21 64 64 HOH HOH . 
L 4 HOH B 22 69 69 HOH HOH . 
L 4 HOH B 23 78 78 HOH HOH . 
L 4 HOH B 24 79 79 HOH HOH . 
L 4 HOH B 25 80 80 HOH HOH . 
L 4 HOH B 26 81 81 HOH HOH . 
L 4 HOH B 27 82 82 HOH HOH . 
L 4 HOH B 28 83 83 HOH HOH . 
L 4 HOH B 29 85 85 HOH HOH . 
L 4 HOH B 30 96 96 HOH HOH . 
L 4 HOH B 31 97 97 HOH HOH . 
L 4 HOH B 32 352 5 HOH HOH . 
M 4 HOH C 1 4 4 HOH HOH . 
M 4 HOH C 2 9 9 HOH HOH . 
M 4 HOH C 3 10 10 HOH HOH . 
M 4 HOH C 4 17 17 HOH HOH . 
M 4 HOH C 5 18 18 HOH HOH . 
M 4 HOH C 6 20 20 HOH HOH . 
M 4 HOH C 7 33 33 HOH HOH . 
M 4 HOH C 8 38 38 HOH HOH . 
M 4 HOH C 9 42 42 HOH HOH . 
M 4 HOH C 10 43 43 HOH HOH . 
M 4 HOH C 11 49 49 HOH HOH . 
M 4 HOH C 12 55 55 HOH HOH . 
M 4 HOH C 13 56 56 HOH HOH . 
M 4 HOH C 14 60 60 HOH HOH . 
M 4 HOH C 15 68 68 HOH HOH . 
M 4 HOH C 16 72 72 HOH HOH . 
M 4 HOH C 17 88 88 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA TMO . . . J 3 19.851 -0.526 1.658 1 57.49 ? CAA TMO 0 C 1 
HETATM 2 N NAC TMO . . . J 3 21.029 -1.075 2.348 1 58.41 ? NAC TMO 0 C 1 
HETATM 3 C CAD TMO . . . J 3 21.472 -0.119 3.375 1 58.37 ? CAD TMO 0 C 1 
HETATM 4 C CAB TMO . . . J 3 22.127 -1.291 1.393 1 58.28 ? CAB TMO 0 C 1 
HETATM 5 O OAE TMO . . . J 3 20.679 -2.349 2.973 1 57.78 ? OAE TMO 0 C 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
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