data_3MQL # _model_server_result.job_id x1k0OJCA73dOIkeNwo70kw _model_server_result.datetime_utc '2024-11-01 06:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":525}' # _entry.id 3MQL # _exptl.entry_id 3MQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MQL _cell.length_a 103.947 _cell.length_b 103.947 _cell.length_c 102.143 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 308 1_555 A SG CYS 31 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 29 A CYS 333 1_555 A SG CYS 38 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 56 A CYS 360 1_555 A SG CYS 82 A CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 70 A CYS 374 1_555 A SG CYS 97 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 116 A CYS 420 1_555 A SG CYS 142 A CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 A SG CYS 130 A CYS 434 1_555 A SG CYS 157 A CYS 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 166 A CYS 470 1_555 A SG CYS 194 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 192 A CYS 496 1_555 A SG CYS 204 A CYS 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 126 A ASN 430 1_555 B C1 NAG . A NAG 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 279 n n C1 O1 NAG sing 280 n n C1 O5 NAG sing 281 n n C1 H1 NAG sing 282 n n C2 C3 NAG sing 283 n n C2 N2 NAG sing 284 n n C2 H2 NAG sing 285 n n C3 C4 NAG sing 286 n n C3 O3 NAG sing 287 n n C3 H3 NAG sing 288 n n C4 C5 NAG sing 289 n n C4 O4 NAG sing 290 n n C4 H4 NAG sing 291 n n C5 C6 NAG sing 292 n n C5 O5 NAG sing 293 n n C5 H5 NAG sing 294 n n C6 O6 NAG sing 295 n n C6 H61 NAG sing 296 n n C6 H62 NAG sing 297 n n C7 C8 NAG sing 298 n n C7 N2 NAG sing 299 n n C7 O7 NAG doub 300 n n C8 H81 NAG sing 301 n n C8 H82 NAG sing 302 n n C8 H83 NAG sing 303 n n N2 HN2 NAG sing 304 n n O1 HO1 NAG sing 305 n n O3 HO3 NAG sing 306 n n O4 HO4 NAG sing 307 n n O6 HO6 NAG sing 308 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3MQL _atom_sites.fract_transf_matrix[1][1] 0.00962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 525 514 NAG NAG . C 3 MPD A 1 526 515 MPD MPD . D 4 MRD A 1 527 516 MRD MRD . E 4 MRD A 1 528 517 MRD MRD . F 5 HOH A 1 529 518 HOH HOH . F 5 HOH A 2 530 519 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 17.63 -14.013 31.351 1 87.15 ? C1 NAG 525 A 1 HETATM 2 C C2 NAG . . . B 2 19.067 -13.517 31.452 1 93.1 ? C2 NAG 525 A 1 HETATM 3 C C3 NAG . . . B 2 19.541 -12.955 30.114 1 94.86 ? C3 NAG 525 A 1 HETATM 4 C C4 NAG . . . B 2 19.265 -13.942 28.984 1 94.49 ? C4 NAG 525 A 1 HETATM 5 C C5 NAG . . . B 2 17.846 -14.501 29.045 1 92.88 ? C5 NAG 525 A 1 HETATM 6 C C6 NAG . . . B 2 17.678 -15.646 28.057 1 94.02 ? C6 NAG 525 A 1 HETATM 7 C C7 NAG . . . B 2 19.662 -12.866 33.707 1 91.99 ? C7 NAG 525 A 1 HETATM 8 C C8 NAG . . . B 2 19.256 -12 34.862 1 92.14 ? C8 NAG 525 A 1 HETATM 9 N N2 NAG . . . B 2 19.18 -12.531 32.511 1 91.84 ? N2 NAG 525 A 1 HETATM 10 O O3 NAG . . . B 2 20.928 -12.696 30.166 1 95.22 ? O3 NAG 525 A 1 HETATM 11 O O4 NAG . . . B 2 19.459 -13.297 27.745 1 93.3 ? O4 NAG 525 A 1 HETATM 12 O O5 NAG . . . B 2 17.536 -14.984 30.333 1 91.96 ? O5 NAG 525 A 1 HETATM 13 O O6 NAG . . . B 2 17.88 -15.159 26.752 1 96.54 ? O6 NAG 525 A 1 HETATM 14 O O7 NAG . . . B 2 20.397 -13.837 33.888 1 91.05 ? O7 NAG 525 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #