data_3MRW # _model_server_result.job_id riMCdWttEjKQxU4p5yuxog _model_server_result.datetime_utc '2024-11-24 15:05:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mrw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":249}' # _entry.id 3MRW # _exptl.entry_id 3MRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MRW _cell.length_a 130.21 _cell.length_b 130.21 _cell.length_c 40.34 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 227 A ASN 227 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3MRW _atom_sites.fract_transf_matrix[1][1] 0.00768 _atom_sites.fract_transf_matrix[1][2] 0.004434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 249 1 GOL GOL . D 4 PEG A 1 250 1 PEG PEG . E 5 HOH A 1 251 251 HOH HOH . E 5 HOH A 2 252 252 HOH HOH . E 5 HOH A 3 253 253 HOH HOH . E 5 HOH A 4 254 254 HOH HOH . E 5 HOH A 5 255 255 HOH HOH . E 5 HOH A 6 256 1 HOH HOH . E 5 HOH A 7 257 257 HOH HOH . E 5 HOH A 8 258 258 HOH HOH . E 5 HOH A 9 259 259 HOH HOH . E 5 HOH A 10 260 260 HOH HOH . E 5 HOH A 11 261 261 HOH HOH . E 5 HOH A 12 262 262 HOH HOH . E 5 HOH A 13 263 263 HOH HOH . E 5 HOH A 14 264 264 HOH HOH . E 5 HOH A 15 265 2 HOH HOH . E 5 HOH A 16 266 3 HOH HOH . E 5 HOH A 17 267 4 HOH HOH . E 5 HOH A 18 268 5 HOH HOH . E 5 HOH A 19 269 6 HOH HOH . E 5 HOH A 20 270 7 HOH HOH . E 5 HOH A 21 271 8 HOH HOH . E 5 HOH A 22 272 9 HOH HOH . E 5 HOH A 23 273 11 HOH HOH . E 5 HOH A 24 274 12 HOH HOH . E 5 HOH A 25 275 13 HOH HOH . E 5 HOH A 26 276 14 HOH HOH . E 5 HOH A 27 277 15 HOH HOH . E 5 HOH A 28 278 16 HOH HOH . E 5 HOH A 29 279 17 HOH HOH . E 5 HOH A 30 280 18 HOH HOH . E 5 HOH A 31 281 19 HOH HOH . E 5 HOH A 32 282 20 HOH HOH . E 5 HOH A 33 283 21 HOH HOH . E 5 HOH A 34 284 22 HOH HOH . E 5 HOH A 35 285 23 HOH HOH . E 5 HOH A 36 286 24 HOH HOH . E 5 HOH A 37 287 25 HOH HOH . E 5 HOH A 38 288 26 HOH HOH . E 5 HOH A 39 289 27 HOH HOH . E 5 HOH A 40 290 28 HOH HOH . E 5 HOH A 41 291 29 HOH HOH . E 5 HOH A 42 292 30 HOH HOH . E 5 HOH A 43 293 31 HOH HOH . E 5 HOH A 44 294 32 HOH HOH . E 5 HOH A 45 295 33 HOH HOH . E 5 HOH A 46 296 34 HOH HOH . E 5 HOH A 47 297 35 HOH HOH . E 5 HOH A 48 298 36 HOH HOH . E 5 HOH A 49 299 37 HOH HOH . E 5 HOH A 50 300 38 HOH HOH . E 5 HOH A 51 301 39 HOH HOH . E 5 HOH A 52 302 40 HOH HOH . E 5 HOH A 53 303 41 HOH HOH . E 5 HOH A 54 304 42 HOH HOH . E 5 HOH A 55 305 43 HOH HOH . E 5 HOH A 56 306 44 HOH HOH . E 5 HOH A 57 307 45 HOH HOH . E 5 HOH A 58 308 46 HOH HOH . E 5 HOH A 59 309 47 HOH HOH . E 5 HOH A 60 310 48 HOH HOH . E 5 HOH A 61 311 49 HOH HOH . E 5 HOH A 62 312 50 HOH HOH . E 5 HOH A 63 313 51 HOH HOH . E 5 HOH A 64 314 52 HOH HOH . E 5 HOH A 65 315 53 HOH HOH . E 5 HOH A 66 316 54 HOH HOH . E 5 HOH A 67 317 55 HOH HOH . E 5 HOH A 68 318 56 HOH HOH . E 5 HOH A 69 319 57 HOH HOH . E 5 HOH A 70 320 58 HOH HOH . E 5 HOH A 71 321 59 HOH HOH . E 5 HOH A 72 322 60 HOH HOH . E 5 HOH A 73 323 61 HOH HOH . E 5 HOH A 74 324 62 HOH HOH . E 5 HOH A 75 325 63 HOH HOH . E 5 HOH A 76 326 64 HOH HOH . E 5 HOH A 77 327 65 HOH HOH . E 5 HOH A 78 328 66 HOH HOH . E 5 HOH A 79 329 67 HOH HOH . E 5 HOH A 80 330 68 HOH HOH . E 5 HOH A 81 331 69 HOH HOH . E 5 HOH A 82 332 70 HOH HOH . E 5 HOH A 83 333 71 HOH HOH . E 5 HOH A 84 334 72 HOH HOH . E 5 HOH A 85 335 73 HOH HOH . E 5 HOH A 86 336 74 HOH HOH . E 5 HOH A 87 337 75 HOH HOH . E 5 HOH A 88 338 76 HOH HOH . E 5 HOH A 89 339 77 HOH HOH . E 5 HOH A 90 340 78 HOH HOH . E 5 HOH A 91 341 79 HOH HOH . E 5 HOH A 92 342 80 HOH HOH . E 5 HOH A 93 343 81 HOH HOH . E 5 HOH A 94 344 82 HOH HOH . E 5 HOH A 95 345 83 HOH HOH . E 5 HOH A 96 346 84 HOH HOH . E 5 HOH A 97 347 85 HOH HOH . E 5 HOH A 98 348 86 HOH HOH . E 5 HOH A 99 349 87 HOH HOH . E 5 HOH A 100 350 88 HOH HOH . E 5 HOH A 101 351 89 HOH HOH . E 5 HOH A 102 352 90 HOH HOH . E 5 HOH A 103 353 91 HOH HOH . E 5 HOH A 104 354 92 HOH HOH . E 5 HOH A 105 355 93 HOH HOH . E 5 HOH A 106 356 94 HOH HOH . E 5 HOH A 107 357 95 HOH HOH . E 5 HOH A 108 358 96 HOH HOH . E 5 HOH A 109 359 97 HOH HOH . E 5 HOH A 110 360 98 HOH HOH . E 5 HOH A 111 361 99 HOH HOH . E 5 HOH A 112 362 100 HOH HOH . E 5 HOH A 113 363 101 HOH HOH . E 5 HOH A 114 364 102 HOH HOH . E 5 HOH A 115 365 103 HOH HOH . E 5 HOH A 116 366 104 HOH HOH . E 5 HOH A 117 367 105 HOH HOH . E 5 HOH A 118 368 106 HOH HOH . E 5 HOH A 119 369 107 HOH HOH . E 5 HOH A 120 370 108 HOH HOH . E 5 HOH A 121 371 109 HOH HOH . E 5 HOH A 122 372 110 HOH HOH . E 5 HOH A 123 373 111 HOH HOH . E 5 HOH A 124 374 112 HOH HOH . E 5 HOH A 125 375 113 HOH HOH . E 5 HOH A 126 376 114 HOH HOH . E 5 HOH A 127 377 115 HOH HOH . E 5 HOH A 128 378 116 HOH HOH . E 5 HOH A 129 379 117 HOH HOH . E 5 HOH A 130 380 118 HOH HOH . E 5 HOH A 131 381 119 HOH HOH . E 5 HOH A 132 382 120 HOH HOH . E 5 HOH A 133 383 121 HOH HOH . E 5 HOH A 134 384 122 HOH HOH . E 5 HOH A 135 385 123 HOH HOH . E 5 HOH A 136 386 124 HOH HOH . E 5 HOH A 137 387 125 HOH HOH . E 5 HOH A 138 388 126 HOH HOH . E 5 HOH A 139 389 127 HOH HOH . E 5 HOH A 140 390 128 HOH HOH . E 5 HOH A 141 391 129 HOH HOH . E 5 HOH A 142 392 130 HOH HOH . E 5 HOH A 143 393 131 HOH HOH . E 5 HOH A 144 394 132 HOH HOH . E 5 HOH A 145 395 133 HOH HOH . E 5 HOH A 146 396 134 HOH HOH . E 5 HOH A 147 397 135 HOH HOH . E 5 HOH A 148 398 136 HOH HOH . E 5 HOH A 149 399 137 HOH HOH . E 5 HOH A 150 400 138 HOH HOH . E 5 HOH A 151 401 139 HOH HOH . E 5 HOH A 152 402 140 HOH HOH . E 5 HOH A 153 403 141 HOH HOH . E 5 HOH A 154 404 142 HOH HOH . E 5 HOH A 155 405 143 HOH HOH . E 5 HOH A 156 406 144 HOH HOH . E 5 HOH A 157 407 145 HOH HOH . E 5 HOH A 158 408 146 HOH HOH . E 5 HOH A 159 409 147 HOH HOH . E 5 HOH A 160 410 148 HOH HOH . E 5 HOH A 161 411 149 HOH HOH . E 5 HOH A 162 412 150 HOH HOH . E 5 HOH A 163 413 151 HOH HOH . E 5 HOH A 164 414 152 HOH HOH . E 5 HOH A 165 415 153 HOH HOH . E 5 HOH A 166 416 154 HOH HOH . E 5 HOH A 167 417 155 HOH HOH . E 5 HOH A 168 418 156 HOH HOH . E 5 HOH A 169 419 157 HOH HOH . E 5 HOH A 170 420 158 HOH HOH . E 5 HOH A 171 421 159 HOH HOH . E 5 HOH A 172 422 160 HOH HOH . E 5 HOH A 173 423 161 HOH HOH . E 5 HOH A 174 424 162 HOH HOH . E 5 HOH A 175 425 163 HOH HOH . E 5 HOH A 176 426 164 HOH HOH . E 5 HOH A 177 427 165 HOH HOH . E 5 HOH A 178 428 166 HOH HOH . E 5 HOH A 179 429 167 HOH HOH . E 5 HOH A 180 430 168 HOH HOH . E 5 HOH A 181 431 169 HOH HOH . E 5 HOH A 182 432 170 HOH HOH . E 5 HOH A 183 433 171 HOH HOH . E 5 HOH A 184 434 172 HOH HOH . E 5 HOH A 185 435 173 HOH HOH . E 5 HOH A 186 436 174 HOH HOH . E 5 HOH A 187 437 175 HOH HOH . E 5 HOH A 188 438 176 HOH HOH . E 5 HOH A 189 439 177 HOH HOH . E 5 HOH A 190 440 178 HOH HOH . E 5 HOH A 191 441 179 HOH HOH . E 5 HOH A 192 442 180 HOH HOH . E 5 HOH A 193 443 182 HOH HOH . E 5 HOH A 194 444 183 HOH HOH . E 5 HOH A 195 445 184 HOH HOH . E 5 HOH A 196 446 185 HOH HOH . E 5 HOH A 197 447 186 HOH HOH . E 5 HOH A 198 448 187 HOH HOH . E 5 HOH A 199 449 188 HOH HOH . E 5 HOH A 200 450 190 HOH HOH . E 5 HOH A 201 451 191 HOH HOH . E 5 HOH A 202 452 192 HOH HOH . E 5 HOH A 203 453 194 HOH HOH . E 5 HOH A 204 454 195 HOH HOH . E 5 HOH A 205 455 196 HOH HOH . E 5 HOH A 206 456 197 HOH HOH . E 5 HOH A 207 457 198 HOH HOH . E 5 HOH A 208 458 200 HOH HOH . E 5 HOH A 209 459 203 HOH HOH . E 5 HOH A 210 460 204 HOH HOH . E 5 HOH A 211 461 205 HOH HOH . E 5 HOH A 212 462 206 HOH HOH . E 5 HOH A 213 463 207 HOH HOH . E 5 HOH A 214 464 208 HOH HOH . E 5 HOH A 215 465 209 HOH HOH . E 5 HOH A 216 466 210 HOH HOH . E 5 HOH A 217 467 211 HOH HOH . E 5 HOH A 218 468 212 HOH HOH . E 5 HOH A 219 469 213 HOH HOH . E 5 HOH A 220 470 215 HOH HOH . E 5 HOH A 221 471 216 HOH HOH . E 5 HOH A 222 472 218 HOH HOH . E 5 HOH A 223 473 219 HOH HOH . E 5 HOH A 224 474 220 HOH HOH . E 5 HOH A 225 475 224 HOH HOH . E 5 HOH A 226 476 225 HOH HOH . E 5 HOH A 227 477 226 HOH HOH . E 5 HOH A 228 478 227 HOH HOH . E 5 HOH A 229 479 228 HOH HOH . E 5 HOH A 230 480 229 HOH HOH . E 5 HOH A 231 481 230 HOH HOH . E 5 HOH A 232 482 233 HOH HOH . E 5 HOH A 233 483 234 HOH HOH . E 5 HOH A 234 484 235 HOH HOH . E 5 HOH A 235 485 236 HOH HOH . E 5 HOH A 236 486 237 HOH HOH . E 5 HOH A 237 487 238 HOH HOH . E 5 HOH A 238 488 239 HOH HOH . E 5 HOH A 239 489 241 HOH HOH . E 5 HOH A 240 490 242 HOH HOH . E 5 HOH A 241 491 244 HOH HOH . E 5 HOH A 242 492 245 HOH HOH . E 5 HOH A 243 493 247 HOH HOH . E 5 HOH A 244 494 248 HOH HOH . E 5 HOH A 245 495 249 HOH HOH . E 5 HOH A 246 496 250 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -18.237 -4.101 8.984 1 25.42 ? C1 GOL 249 A 1 HETATM 2 O O1 GOL . . . C 3 -17.337 -5.164 9.264 1 23.41 ? O1 GOL 249 A 1 HETATM 3 C C2 GOL . . . C 3 -18.768 -3.522 10.318 1 26.84 ? C2 GOL 249 A 1 HETATM 4 O O2 GOL . . . C 3 -17.643 -3.206 11.172 1 23.82 ? O2 GOL 249 A 1 HETATM 5 C C3 GOL . . . C 3 -19.852 -4.499 10.864 1 26.33 ? C3 GOL 249 A 1 HETATM 6 O O3 GOL . . . C 3 -20.149 -4.263 12.247 1 19.47 ? O3 GOL 249 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #