data_3MRY # _model_server_result.job_id Ro5pT6ykoDckM71NxAsMeA _model_server_result.datetime_utc '2024-10-23 10:35:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":247}' # _entry.id 3MRY # _exptl.entry_id 3MRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MRY _cell.length_a 130.135 _cell.length_b 130.135 _cell.length_c 39.524 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 227 A ASN 227 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 3MRY _atom_sites.fract_transf_matrix[1][1] 0.007684 _atom_sites.fract_transf_matrix[1][2] 0.004437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADE A 1 247 1 ADE ADE . D 4 GOL A 1 248 1 GOL GOL . E 5 HOH A 1 251 2 HOH HOH . E 5 HOH A 2 252 3 HOH HOH . E 5 HOH A 3 253 4 HOH HOH . E 5 HOH A 4 254 5 HOH HOH . E 5 HOH A 5 255 6 HOH HOH . E 5 HOH A 6 256 7 HOH HOH . E 5 HOH A 7 257 8 HOH HOH . E 5 HOH A 8 258 9 HOH HOH . E 5 HOH A 9 259 10 HOH HOH . E 5 HOH A 10 260 11 HOH HOH . E 5 HOH A 11 261 12 HOH HOH . E 5 HOH A 12 262 13 HOH HOH . E 5 HOH A 13 263 14 HOH HOH . E 5 HOH A 14 264 15 HOH HOH . E 5 HOH A 15 265 17 HOH HOH . E 5 HOH A 16 266 18 HOH HOH . E 5 HOH A 17 267 19 HOH HOH . E 5 HOH A 18 268 21 HOH HOH . E 5 HOH A 19 269 22 HOH HOH . E 5 HOH A 20 270 23 HOH HOH . E 5 HOH A 21 271 24 HOH HOH . E 5 HOH A 22 272 25 HOH HOH . E 5 HOH A 23 273 26 HOH HOH . E 5 HOH A 24 274 27 HOH HOH . E 5 HOH A 25 275 28 HOH HOH . E 5 HOH A 26 276 29 HOH HOH . E 5 HOH A 27 277 30 HOH HOH . E 5 HOH A 28 278 31 HOH HOH . E 5 HOH A 29 279 32 HOH HOH . E 5 HOH A 30 280 33 HOH HOH . E 5 HOH A 31 281 34 HOH HOH . E 5 HOH A 32 282 35 HOH HOH . E 5 HOH A 33 283 36 HOH HOH . E 5 HOH A 34 284 37 HOH HOH . E 5 HOH A 35 285 38 HOH HOH . E 5 HOH A 36 286 39 HOH HOH . E 5 HOH A 37 287 40 HOH HOH . E 5 HOH A 38 288 41 HOH HOH . E 5 HOH A 39 289 42 HOH HOH . E 5 HOH A 40 290 43 HOH HOH . E 5 HOH A 41 291 44 HOH HOH . E 5 HOH A 42 292 45 HOH HOH . E 5 HOH A 43 293 46 HOH HOH . E 5 HOH A 44 294 47 HOH HOH . E 5 HOH A 45 295 48 HOH HOH . E 5 HOH A 46 296 49 HOH HOH . E 5 HOH A 47 297 50 HOH HOH . E 5 HOH A 48 298 51 HOH HOH . E 5 HOH A 49 299 52 HOH HOH . E 5 HOH A 50 300 53 HOH HOH . E 5 HOH A 51 301 54 HOH HOH . E 5 HOH A 52 302 55 HOH HOH . E 5 HOH A 53 303 56 HOH HOH . E 5 HOH A 54 304 59 HOH HOH . E 5 HOH A 55 305 60 HOH HOH . E 5 HOH A 56 306 61 HOH HOH . E 5 HOH A 57 307 62 HOH HOH . E 5 HOH A 58 308 63 HOH HOH . E 5 HOH A 59 309 64 HOH HOH . E 5 HOH A 60 310 66 HOH HOH . E 5 HOH A 61 311 67 HOH HOH . E 5 HOH A 62 312 68 HOH HOH . E 5 HOH A 63 313 69 HOH HOH . E 5 HOH A 64 314 70 HOH HOH . E 5 HOH A 65 315 71 HOH HOH . E 5 HOH A 66 316 72 HOH HOH . E 5 HOH A 67 317 73 HOH HOH . E 5 HOH A 68 318 74 HOH HOH . E 5 HOH A 69 319 75 HOH HOH . E 5 HOH A 70 320 76 HOH HOH . E 5 HOH A 71 321 77 HOH HOH . E 5 HOH A 72 322 79 HOH HOH . E 5 HOH A 73 323 80 HOH HOH . E 5 HOH A 74 324 81 HOH HOH . E 5 HOH A 75 325 83 HOH HOH . E 5 HOH A 76 326 84 HOH HOH . E 5 HOH A 77 327 85 HOH HOH . E 5 HOH A 78 328 86 HOH HOH . E 5 HOH A 79 329 87 HOH HOH . E 5 HOH A 80 330 88 HOH HOH . E 5 HOH A 81 331 89 HOH HOH . E 5 HOH A 82 332 90 HOH HOH . E 5 HOH A 83 333 91 HOH HOH . E 5 HOH A 84 334 92 HOH HOH . E 5 HOH A 85 335 94 HOH HOH . E 5 HOH A 86 336 95 HOH HOH . E 5 HOH A 87 337 96 HOH HOH . E 5 HOH A 88 338 97 HOH HOH . E 5 HOH A 89 339 98 HOH HOH . E 5 HOH A 90 340 99 HOH HOH . E 5 HOH A 91 341 100 HOH HOH . E 5 HOH A 92 342 101 HOH HOH . E 5 HOH A 93 343 102 HOH HOH . E 5 HOH A 94 344 103 HOH HOH . E 5 HOH A 95 345 104 HOH HOH . E 5 HOH A 96 346 105 HOH HOH . E 5 HOH A 97 347 106 HOH HOH . E 5 HOH A 98 348 107 HOH HOH . E 5 HOH A 99 349 108 HOH HOH . E 5 HOH A 100 350 109 HOH HOH . E 5 HOH A 101 351 110 HOH HOH . E 5 HOH A 102 352 111 HOH HOH . E 5 HOH A 103 353 112 HOH HOH . E 5 HOH A 104 354 113 HOH HOH . E 5 HOH A 105 355 114 HOH HOH . E 5 HOH A 106 356 115 HOH HOH . E 5 HOH A 107 357 116 HOH HOH . E 5 HOH A 108 358 117 HOH HOH . E 5 HOH A 109 359 118 HOH HOH . E 5 HOH A 110 360 119 HOH HOH . E 5 HOH A 111 361 121 HOH HOH . E 5 HOH A 112 362 122 HOH HOH . E 5 HOH A 113 363 123 HOH HOH . E 5 HOH A 114 364 124 HOH HOH . E 5 HOH A 115 365 125 HOH HOH . E 5 HOH A 116 366 126 HOH HOH . E 5 HOH A 117 367 127 HOH HOH . E 5 HOH A 118 368 128 HOH HOH . E 5 HOH A 119 369 129 HOH HOH . E 5 HOH A 120 370 130 HOH HOH . E 5 HOH A 121 371 131 HOH HOH . E 5 HOH A 122 372 132 HOH HOH . E 5 HOH A 123 373 133 HOH HOH . E 5 HOH A 124 374 134 HOH HOH . E 5 HOH A 125 375 135 HOH HOH . E 5 HOH A 126 376 136 HOH HOH . E 5 HOH A 127 377 137 HOH HOH . E 5 HOH A 128 378 138 HOH HOH . E 5 HOH A 129 379 139 HOH HOH . E 5 HOH A 130 380 140 HOH HOH . E 5 HOH A 131 381 142 HOH HOH . E 5 HOH A 132 382 143 HOH HOH . E 5 HOH A 133 383 144 HOH HOH . E 5 HOH A 134 384 145 HOH HOH . E 5 HOH A 135 385 146 HOH HOH . E 5 HOH A 136 386 148 HOH HOH . E 5 HOH A 137 387 149 HOH HOH . E 5 HOH A 138 388 151 HOH HOH . E 5 HOH A 139 389 152 HOH HOH . E 5 HOH A 140 390 153 HOH HOH . E 5 HOH A 141 391 154 HOH HOH . E 5 HOH A 142 392 155 HOH HOH . E 5 HOH A 143 393 156 HOH HOH . E 5 HOH A 144 394 158 HOH HOH . E 5 HOH A 145 395 159 HOH HOH . E 5 HOH A 146 396 160 HOH HOH . E 5 HOH A 147 397 161 HOH HOH . E 5 HOH A 148 398 162 HOH HOH . E 5 HOH A 149 399 163 HOH HOH . E 5 HOH A 150 400 166 HOH HOH . E 5 HOH A 151 401 167 HOH HOH . E 5 HOH A 152 402 168 HOH HOH . E 5 HOH A 153 403 170 HOH HOH . E 5 HOH A 154 404 171 HOH HOH . E 5 HOH A 155 405 172 HOH HOH . E 5 HOH A 156 406 174 HOH HOH . E 5 HOH A 157 407 175 HOH HOH . E 5 HOH A 158 408 177 HOH HOH . E 5 HOH A 159 409 178 HOH HOH . E 5 HOH A 160 410 180 HOH HOH . E 5 HOH A 161 411 181 HOH HOH . E 5 HOH A 162 412 182 HOH HOH . E 5 HOH A 163 413 183 HOH HOH . E 5 HOH A 164 414 184 HOH HOH . E 5 HOH A 165 415 185 HOH HOH . E 5 HOH A 166 416 186 HOH HOH . E 5 HOH A 167 417 187 HOH HOH . E 5 HOH A 168 418 188 HOH HOH . E 5 HOH A 169 419 189 HOH HOH . E 5 HOH A 170 420 190 HOH HOH . E 5 HOH A 171 421 191 HOH HOH . E 5 HOH A 172 422 192 HOH HOH . E 5 HOH A 173 423 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . C 3 113.088 14.424 -4.591 1 41.08 ? N9 ADE 247 A 1 HETATM 2 C C8 ADE . . . C 3 114.35 14.543 -5.086 1 39.13 ? C8 ADE 247 A 1 HETATM 3 N N7 ADE . . . C 3 115.17 14.96 -4.134 1 36.5 ? N7 ADE 247 A 1 HETATM 4 C C5 ADE . . . C 3 114.424 15.144 -2.993 1 36 ? C5 ADE 247 A 1 HETATM 5 C C6 ADE . . . C 3 114.73 15.573 -1.658 1 31.78 ? C6 ADE 247 A 1 HETATM 6 N N6 ADE . . . C 3 115.975 15.945 -1.247 1 39.93 ? N6 ADE 247 A 1 HETATM 7 N N1 ADE . . . C 3 113.72 15.609 -0.762 1 32.07 ? N1 ADE 247 A 1 HETATM 8 C C2 ADE . . . C 3 112.459 15.247 -1.113 1 31.05 ? C2 ADE 247 A 1 HETATM 9 N N3 ADE . . . C 3 112.092 14.838 -2.367 1 37.73 ? N3 ADE 247 A 1 HETATM 10 C C4 ADE . . . C 3 113.113 14.807 -3.258 1 34.43 ? C4 ADE 247 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #