data_3MS4 # _model_server_result.job_id V-kHjWj5A1P1lAisltnlFA _model_server_result.datetime_utc '2024-10-13 15:15:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ms4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":998}' # _entry.id 3MS4 # _exptl.entry_id 3MS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.381 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[(2E)-2-{[4-(trifluoromethyl)phenyl]methylidene}hydrazino]carbonothioyl}-beta-D-glucopyranosylamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MS4 _cell.length_a 128.915 _cell.length_b 128.915 _cell.length_c 116.965 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.965 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 679 A MET 679 1_555 A N LLP 680 A LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C LLP 680 A LLP 680 1_555 A N PHE 681 A PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C15 H18 F3 N3 O5 S' _chem_comp.formula_weight 409.381 _chem_comp.id 21N _chem_comp.mon_nstd_flag . _chem_comp.name N-{[(2E)-2-{[4-(trifluoromethyl)phenyl]methylidene}hydrazino]carbonothioyl}-beta-D-glucopyranosylamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-trifluoromethylbenzaldehyde-4-(beta-D-glucopyranosyl)-thiosemicarbazone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 21N sing 1 n n N1 C1 21N sing 2 n n O5 C1 21N sing 3 n n C1 H1 21N sing 4 n n F1 C15 21N sing 5 n n N1 C7 21N sing 6 n n N1 HN1 21N sing 7 n n C7 S1 21N doub 8 n n C2 C3 21N sing 9 n n C2 O2 21N sing 10 n n C2 H2 21N sing 11 n n F2 C15 21N sing 12 n n N3 N2 21N sing 13 n n N2 C7 21N sing 14 n n N2 HN2 21N sing 15 n n O2 HO2 21N sing 16 n n O3 C3 21N sing 17 n n C4 C3 21N sing 18 n n C3 H3 21N sing 19 n n F3 C15 21N sing 20 n n C8 N3 21N doub 21 n n O3 HO3 21N sing 22 n n C4 O4 21N sing 23 n n C4 C5 21N sing 24 n n C4 H4 21N sing 25 n n O4 HO4 21N sing 26 n n C6 C5 21N sing 27 n n O5 C5 21N sing 28 n n C5 H5 21N sing 29 n n O6 C6 21N sing 30 n n C6 H6 21N sing 31 n n C6 H6A 21N sing 32 n n O6 HO6 21N sing 33 e n C9 C8 21N sing 34 n n C8 H8 21N sing 35 n n C10 C9 21N doub 36 n y C14 C9 21N sing 37 n y C11 C10 21N sing 38 n y C10 H10 21N sing 39 n n C12 C11 21N doub 40 n y C11 H11 21N sing 41 n n C15 C12 21N sing 42 n n C12 C13 21N sing 43 n y C13 C14 21N doub 44 n y C13 H13 21N sing 45 n n C14 H14 21N sing 46 n n # _atom_sites.entry_id 3MS4 _atom_sites.fract_transf_matrix[1][1] 0.007757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 21N A 1 920 920 21N 21N . C 2 21N A 1 998 998 21N 21N . D 3 HOH A 1 843 1 HOH HOH . D 3 HOH A 2 844 2 HOH HOH . D 3 HOH A 3 845 3 HOH HOH . D 3 HOH A 4 846 4 HOH HOH . D 3 HOH A 5 847 5 HOH HOH . D 3 HOH A 6 848 6 HOH HOH . D 3 HOH A 7 849 7 HOH HOH . D 3 HOH A 8 850 8 HOH HOH . D 3 HOH A 9 851 9 HOH HOH . D 3 HOH A 10 852 10 HOH HOH . D 3 HOH A 11 853 11 HOH HOH . D 3 HOH A 12 854 12 HOH HOH . D 3 HOH A 13 855 13 HOH HOH . D 3 HOH A 14 856 14 HOH HOH . D 3 HOH A 15 857 15 HOH HOH . D 3 HOH A 16 858 16 HOH HOH . D 3 HOH A 17 859 17 HOH HOH . D 3 HOH A 18 860 18 HOH HOH . D 3 HOH A 19 861 19 HOH HOH . D 3 HOH A 20 862 20 HOH HOH . D 3 HOH A 21 863 21 HOH HOH . D 3 HOH A 22 864 22 HOH HOH . D 3 HOH A 23 865 23 HOH HOH . D 3 HOH A 24 866 24 HOH HOH . D 3 HOH A 25 867 25 HOH HOH . D 3 HOH A 26 868 26 HOH HOH . D 3 HOH A 27 869 27 HOH HOH . D 3 HOH A 28 870 28 HOH HOH . D 3 HOH A 29 871 29 HOH HOH . D 3 HOH A 30 872 30 HOH HOH . D 3 HOH A 31 873 31 HOH HOH . D 3 HOH A 32 874 32 HOH HOH . D 3 HOH A 33 875 33 HOH HOH . D 3 HOH A 34 876 34 HOH HOH . D 3 HOH A 35 877 35 HOH HOH . D 3 HOH A 36 878 36 HOH HOH . D 3 HOH A 37 879 37 HOH HOH . D 3 HOH A 38 880 38 HOH HOH . D 3 HOH A 39 881 39 HOH HOH . D 3 HOH A 40 882 40 HOH HOH . D 3 HOH A 41 883 41 HOH HOH . D 3 HOH A 42 884 42 HOH HOH . D 3 HOH A 43 885 43 HOH HOH . D 3 HOH A 44 886 44 HOH HOH . D 3 HOH A 45 887 45 HOH HOH . D 3 HOH A 46 888 46 HOH HOH . D 3 HOH A 47 889 47 HOH HOH . D 3 HOH A 48 890 48 HOH HOH . D 3 HOH A 49 891 49 HOH HOH . D 3 HOH A 50 892 50 HOH HOH . D 3 HOH A 51 893 51 HOH HOH . D 3 HOH A 52 894 52 HOH HOH . D 3 HOH A 53 895 53 HOH HOH . D 3 HOH A 54 896 54 HOH HOH . D 3 HOH A 55 897 55 HOH HOH . D 3 HOH A 56 898 56 HOH HOH . D 3 HOH A 57 899 57 HOH HOH . D 3 HOH A 58 900 58 HOH HOH . D 3 HOH A 59 901 59 HOH HOH . D 3 HOH A 60 902 60 HOH HOH . D 3 HOH A 61 903 61 HOH HOH . D 3 HOH A 62 904 62 HOH HOH . D 3 HOH A 63 905 63 HOH HOH . D 3 HOH A 64 906 64 HOH HOH . D 3 HOH A 65 907 65 HOH HOH . D 3 HOH A 66 908 66 HOH HOH . D 3 HOH A 67 909 67 HOH HOH . D 3 HOH A 68 910 68 HOH HOH . D 3 HOH A 69 911 69 HOH HOH . D 3 HOH A 70 912 70 HOH HOH . D 3 HOH A 71 913 71 HOH HOH . D 3 HOH A 72 914 72 HOH HOH . D 3 HOH A 73 915 73 HOH HOH . D 3 HOH A 74 916 74 HOH HOH . D 3 HOH A 75 917 75 HOH HOH . D 3 HOH A 76 918 76 HOH HOH . D 3 HOH A 77 919 77 HOH HOH . D 3 HOH A 78 921 78 HOH HOH . D 3 HOH A 79 922 79 HOH HOH . D 3 HOH A 80 923 80 HOH HOH . D 3 HOH A 81 924 81 HOH HOH . D 3 HOH A 82 925 82 HOH HOH . D 3 HOH A 83 926 83 HOH HOH . D 3 HOH A 84 927 84 HOH HOH . D 3 HOH A 85 928 85 HOH HOH . D 3 HOH A 86 929 86 HOH HOH . D 3 HOH A 87 930 87 HOH HOH . D 3 HOH A 88 931 88 HOH HOH . D 3 HOH A 89 932 89 HOH HOH . D 3 HOH A 90 933 90 HOH HOH . D 3 HOH A 91 934 91 HOH HOH . D 3 HOH A 92 935 92 HOH HOH . D 3 HOH A 93 936 93 HOH HOH . D 3 HOH A 94 937 94 HOH HOH . D 3 HOH A 95 938 95 HOH HOH . D 3 HOH A 96 939 96 HOH HOH . D 3 HOH A 97 940 97 HOH HOH . D 3 HOH A 98 941 98 HOH HOH . D 3 HOH A 99 942 99 HOH HOH . D 3 HOH A 100 943 100 HOH HOH . D 3 HOH A 101 944 101 HOH HOH . D 3 HOH A 102 945 102 HOH HOH . D 3 HOH A 103 946 103 HOH HOH . D 3 HOH A 104 947 104 HOH HOH . D 3 HOH A 105 948 105 HOH HOH . D 3 HOH A 106 949 106 HOH HOH . D 3 HOH A 107 950 107 HOH HOH . D 3 HOH A 108 951 108 HOH HOH . D 3 HOH A 109 952 109 HOH HOH . D 3 HOH A 110 953 110 HOH HOH . D 3 HOH A 111 954 111 HOH HOH . D 3 HOH A 112 955 112 HOH HOH . D 3 HOH A 113 956 113 HOH HOH . D 3 HOH A 114 957 114 HOH HOH . D 3 HOH A 115 958 115 HOH HOH . D 3 HOH A 116 959 116 HOH HOH . D 3 HOH A 117 960 117 HOH HOH . D 3 HOH A 118 961 118 HOH HOH . D 3 HOH A 119 962 119 HOH HOH . D 3 HOH A 120 963 120 HOH HOH . D 3 HOH A 121 964 121 HOH HOH . D 3 HOH A 122 965 122 HOH HOH . D 3 HOH A 123 966 123 HOH HOH . D 3 HOH A 124 967 124 HOH HOH . D 3 HOH A 125 968 125 HOH HOH . D 3 HOH A 126 969 126 HOH HOH . D 3 HOH A 127 970 127 HOH HOH . D 3 HOH A 128 971 128 HOH HOH . D 3 HOH A 129 972 129 HOH HOH . D 3 HOH A 130 973 130 HOH HOH . D 3 HOH A 131 974 131 HOH HOH . D 3 HOH A 132 975 132 HOH HOH . D 3 HOH A 133 976 133 HOH HOH . D 3 HOH A 134 977 134 HOH HOH . D 3 HOH A 135 978 135 HOH HOH . D 3 HOH A 136 979 136 HOH HOH . D 3 HOH A 137 980 137 HOH HOH . D 3 HOH A 138 981 138 HOH HOH . D 3 HOH A 139 982 139 HOH HOH . D 3 HOH A 140 983 140 HOH HOH . D 3 HOH A 141 984 141 HOH HOH . D 3 HOH A 142 985 142 HOH HOH . D 3 HOH A 143 986 143 HOH HOH . D 3 HOH A 144 987 144 HOH HOH . D 3 HOH A 145 988 145 HOH HOH . D 3 HOH A 146 989 146 HOH HOH . D 3 HOH A 147 990 147 HOH HOH . D 3 HOH A 148 991 148 HOH HOH . D 3 HOH A 149 992 149 HOH HOH . D 3 HOH A 150 993 150 HOH HOH . D 3 HOH A 151 994 151 HOH HOH . D 3 HOH A 152 995 152 HOH HOH . D 3 HOH A 153 996 153 HOH HOH . D 3 HOH A 154 997 154 HOH HOH . D 3 HOH A 155 999 155 HOH HOH . D 3 HOH A 156 1000 156 HOH HOH . D 3 HOH A 157 1001 157 HOH HOH . D 3 HOH A 158 1002 158 HOH HOH . D 3 HOH A 159 1003 159 HOH HOH . D 3 HOH A 160 1004 160 HOH HOH . D 3 HOH A 161 1005 161 HOH HOH . D 3 HOH A 162 1006 162 HOH HOH . D 3 HOH A 163 1007 163 HOH HOH . D 3 HOH A 164 1008 164 HOH HOH . D 3 HOH A 165 1009 165 HOH HOH . D 3 HOH A 166 1010 166 HOH HOH . D 3 HOH A 167 1011 167 HOH HOH . D 3 HOH A 168 1012 168 HOH HOH . D 3 HOH A 169 1013 169 HOH HOH . D 3 HOH A 170 1014 170 HOH HOH . D 3 HOH A 171 1015 171 HOH HOH . D 3 HOH A 172 1016 172 HOH HOH . D 3 HOH A 173 1017 173 HOH HOH . D 3 HOH A 174 1018 174 HOH HOH . D 3 HOH A 175 1019 175 HOH HOH . D 3 HOH A 176 1020 176 HOH HOH . D 3 HOH A 177 1021 177 HOH HOH . D 3 HOH A 178 1022 178 HOH HOH . D 3 HOH A 179 1023 179 HOH HOH . D 3 HOH A 180 1024 180 HOH HOH . D 3 HOH A 181 1025 181 HOH HOH . D 3 HOH A 182 1026 182 HOH HOH . D 3 HOH A 183 1027 183 HOH HOH . D 3 HOH A 184 1028 184 HOH HOH . D 3 HOH A 185 1029 185 HOH HOH . D 3 HOH A 186 1030 186 HOH HOH . D 3 HOH A 187 1031 187 HOH HOH . D 3 HOH A 188 1032 188 HOH HOH . D 3 HOH A 189 1033 189 HOH HOH . D 3 HOH A 190 1034 190 HOH HOH . D 3 HOH A 191 1035 191 HOH HOH . D 3 HOH A 192 1036 192 HOH HOH . D 3 HOH A 193 1037 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 21N . . . C 2 33.613 22.823 28.081 1 39.12 ? C1 21N 998 A 1 HETATM 2 F F1 21N . . . C 2 36.215 29.248 37.389 1 54.27 ? F1 21N 998 A 1 HETATM 3 N N1 21N . . . C 2 34.683 23.327 28.919 1 39.45 ? N1 21N 998 A 1 HETATM 4 S S1 21N . . . C 2 33.031 24.384 30.574 1 45.52 ? S1 21N 998 A 1 HETATM 5 C C2 21N . . . C 2 33.928 23.097 26.607 1 38.56 ? C2 21N 998 A 1 HETATM 6 F F2 21N . . . C 2 38.094 28.315 37.873 1 55.29 ? F2 21N 998 A 1 HETATM 7 N N2 21N . . . C 2 35.626 24.311 30.721 1 44.43 ? N2 21N 998 A 1 HETATM 8 O O2 21N . . . C 2 34.189 24.501 26.41 1 39.35 ? O2 21N 998 A 1 HETATM 9 C C3 21N . . . C 2 32.815 22.555 25.696 1 36.61 ? C3 21N 998 A 1 HETATM 10 F F3 21N . . . C 2 36.234 27.348 38.394 1 55.23 ? F3 21N 998 A 1 HETATM 11 N N3 21N . . . C 2 35.632 24.934 31.877 1 45.81 ? N3 21N 998 A 1 HETATM 12 O O3 21N . . . C 2 33.186 22.675 24.304 1 33.64 ? O3 21N 998 A 1 HETATM 13 C C4 21N . . . C 2 32.544 21.084 26.068 1 35.8 ? C4 21N 998 A 1 HETATM 14 O O4 21N . . . C 2 31.38 20.639 25.365 1 35.3 ? O4 21N 998 A 1 HETATM 15 C C5 21N . . . C 2 32.326 20.895 27.592 1 35.83 ? C5 21N 998 A 1 HETATM 16 O O5 21N . . . C 2 33.45 21.409 28.303 1 35.48 ? O5 21N 998 A 1 HETATM 17 C C6 21N . . . C 2 32.171 19.441 28.029 1 34.61 ? C6 21N 998 A 1 HETATM 18 O O6 21N . . . C 2 33.283 18.693 27.501 1 30.86 ? O6 21N 998 A 1 HETATM 19 C C7 21N . . . C 2 34.492 23.992 30.061 1 43.96 ? C7 21N 998 A 1 HETATM 20 C C8 21N . . . C 2 36.718 25.358 32.369 1 48.56 ? C8 21N 998 A 1 HETATM 21 C C9 21N . . . C 2 36.747 26.063 33.677 1 49.21 ? C9 21N 998 A 1 HETATM 22 C C10 21N . . . C 2 35.593 26.145 34.469 1 50.4 ? C10 21N 998 A 1 HETATM 23 C C11 21N . . . C 2 35.632 26.801 35.701 1 51.04 ? C11 21N 998 A 1 HETATM 24 C C12 21N . . . C 2 36.821 27.376 36.153 1 52.7 ? C12 21N 998 A 1 HETATM 25 C C13 21N . . . C 2 37.978 27.297 35.36 1 51.22 ? C13 21N 998 A 1 HETATM 26 C C14 21N . . . C 2 37.94 26.64 34.127 1 49.99 ? C14 21N 998 A 1 HETATM 27 C C15 21N . . . C 2 36.844 28.09 37.486 1 54.03 ? C15 21N 998 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #