data_3MS6 # _model_server_result.job_id HIjvAbRCzPbRu1WiY9uI9w _model_server_result.datetime_utc '2024-12-26 19:47:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ms6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 3MS6 # _exptl.entry_id 3MS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MS6 _cell.length_a 48.997 _cell.length_b 48.997 _cell.length_c 71.644 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 35.822 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C THR 12 A THR 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 13 A MSE 13 1_555 A N LYS 14 A LYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C ILE 74 A ILE 74 1_555 A N MSE 75 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 75 A MSE 75 1_555 A N ILE 76 A ILE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C LYS 88 A LYS 88 1_555 A N MSE 89 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C MSE 89 A MSE 89 1_555 A N ALA 90 A ALA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3MS6 _atom_sites.fract_transf_matrix[1][1] 0.020409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 100 100 PEG PEG . C 3 IPA A 1 101 101 IPA IPA . D 3 IPA A 1 102 102 IPA IPA . E 4 GOL A 1 103 103 GOL GOL . F 5 HOH A 1 104 1 HOH HOH . F 5 HOH A 2 105 2 HOH HOH . F 5 HOH A 3 106 3 HOH HOH . F 5 HOH A 4 107 4 HOH HOH . F 5 HOH A 5 108 5 HOH HOH . F 5 HOH A 6 109 6 HOH HOH . F 5 HOH A 7 110 7 HOH HOH . F 5 HOH A 8 111 8 HOH HOH . F 5 HOH A 9 112 9 HOH HOH . F 5 HOH A 10 113 10 HOH HOH . F 5 HOH A 11 114 11 HOH HOH . F 5 HOH A 12 115 12 HOH HOH . F 5 HOH A 13 116 13 HOH HOH . F 5 HOH A 14 117 14 HOH HOH . F 5 HOH A 15 118 15 HOH HOH . F 5 HOH A 16 119 16 HOH HOH . F 5 HOH A 17 120 17 HOH HOH . F 5 HOH A 18 121 18 HOH HOH . F 5 HOH A 19 122 19 HOH HOH . F 5 HOH A 20 123 20 HOH HOH . F 5 HOH A 21 124 21 HOH HOH . F 5 HOH A 22 125 22 HOH HOH . F 5 HOH A 23 126 23 HOH HOH . F 5 HOH A 24 127 24 HOH HOH . F 5 HOH A 25 128 25 HOH HOH . F 5 HOH A 26 129 26 HOH HOH . F 5 HOH A 27 130 27 HOH HOH . F 5 HOH A 28 131 28 HOH HOH . F 5 HOH A 29 132 29 HOH HOH . F 5 HOH A 30 133 30 HOH HOH . F 5 HOH A 31 134 31 HOH HOH . F 5 HOH A 32 135 32 HOH HOH . F 5 HOH A 33 136 33 HOH HOH . F 5 HOH A 34 137 34 HOH HOH . F 5 HOH A 35 138 35 HOH HOH . F 5 HOH A 36 139 36 HOH HOH . F 5 HOH A 37 140 37 HOH HOH . F 5 HOH A 38 141 38 HOH HOH . F 5 HOH A 39 142 39 HOH HOH . F 5 HOH A 40 143 40 HOH HOH . F 5 HOH A 41 144 41 HOH HOH . F 5 HOH A 42 145 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 4.261 20.735 19.194 1 38.81 ? C1 GOL 103 A 1 HETATM 2 O O1 GOL . . . E 4 4.26 22.14 19.334 1 40.85 ? O1 GOL 103 A 1 HETATM 3 C C2 GOL . . . E 4 4.641 20.097 20.528 1 44.63 ? C2 GOL 103 A 1 HETATM 4 O O2 GOL . . . E 4 4.572 21.055 21.575 1 45.48 ? O2 GOL 103 A 1 HETATM 5 C C3 GOL . . . E 4 6.043 19.497 20.448 1 45.08 ? C3 GOL 103 A 1 HETATM 6 O O3 GOL . . . E 4 6.024 18.24 19.799 1 45.73 ? O3 GOL 103 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #