data_3MSF # _model_server_result.job_id Eqn0d2Yah-7ouAFDGJwtiQ _model_server_result.datetime_utc '2024-11-26 23:56:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3msf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":802}' # _entry.id 3MSF # _exptl.entry_id 3MSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MSF _cell.length_a 92.614 _cell.length_b 92.614 _cell.length_c 128.701 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc8 A OE2 GLU 166 A GLU 166 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc9 A OE1 GLU 177 A GLU 177 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc10 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc12 A O ASN 183 A ASN 183 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc13 A OD1 ASP 185 A ASP 185 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc14 A OD2 ASP 185 A ASP 185 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc15 A O GLU 187 A GLU 187 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc16 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc17 A OE1 GLU 190 A GLU 190 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc19 A O TYR 193 A TYR 193 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc20 A OG1 THR 194 A THR 194 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc21 A O THR 194 A THR 194 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc22 A O ILE 197 A ILE 197 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc23 A OD1 ASP 200 A ASP 200 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc24 B ZN ZN . A ZN 401 1_555 K O HOH . A HOH 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc25 C CA CA . A CA 501 1_555 K O HOH . A HOH 1094 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc26 D CA CA . A CA 502 1_555 K O HOH . A HOH 1095 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc27 D CA CA . A CA 502 1_555 K O HOH . A HOH 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc28 E CA CA . A CA 503 1_555 K O HOH . A HOH 1096 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc29 E CA CA . A CA 503 1_555 K O HOH . A HOH 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc30 E CA CA . A CA 503 1_555 K O HOH . A HOH 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc31 F CA CA . A CA 504 1_555 K O HOH . A HOH 1098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc32 F CA CA . A CA 504 1_555 K O HOH . A HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3MSF _atom_sites.fract_transf_matrix[1][1] 0.010798 _atom_sites.fract_transf_matrix[1][2] 0.006234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 3 CA A 1 501 501 CA CA . D 3 CA A 1 502 502 CA CA . E 3 CA A 1 503 503 CA CA . F 3 CA A 1 504 504 CA CA . G 4 URE A 1 601 601 URE URE . H 5 GOL A 1 801 801 GOL GOL . I 5 GOL A 1 802 802 GOL GOL . J 5 GOL A 1 803 803 GOL GOL . K 6 HOH A 1 1001 1001 HOH HOH . K 6 HOH A 2 1002 1002 HOH HOH . K 6 HOH A 3 1003 1003 HOH HOH . K 6 HOH A 4 1004 1004 HOH HOH . K 6 HOH A 5 1005 1005 HOH HOH . K 6 HOH A 6 1006 1006 HOH HOH . K 6 HOH A 7 1007 1007 HOH HOH . K 6 HOH A 8 1008 1008 HOH HOH . K 6 HOH A 9 1009 1009 HOH HOH . K 6 HOH A 10 1010 1010 HOH HOH . K 6 HOH A 11 1011 1011 HOH HOH . K 6 HOH A 12 1012 1012 HOH HOH . K 6 HOH A 13 1013 1013 HOH HOH . K 6 HOH A 14 1014 1014 HOH HOH . K 6 HOH A 15 1015 1015 HOH HOH . K 6 HOH A 16 1016 1016 HOH HOH . K 6 HOH A 17 1017 1017 HOH HOH . K 6 HOH A 18 1018 1018 HOH HOH . K 6 HOH A 19 1019 1019 HOH HOH . K 6 HOH A 20 1020 1020 HOH HOH . K 6 HOH A 21 1021 1021 HOH HOH . K 6 HOH A 22 1022 1022 HOH HOH . K 6 HOH A 23 1023 1023 HOH HOH . K 6 HOH A 24 1024 1024 HOH HOH . K 6 HOH A 25 1025 1025 HOH HOH . K 6 HOH A 26 1026 1026 HOH HOH . K 6 HOH A 27 1027 1027 HOH HOH . K 6 HOH A 28 1028 1028 HOH HOH . K 6 HOH A 29 1029 1029 HOH HOH . K 6 HOH A 30 1030 1030 HOH HOH . K 6 HOH A 31 1031 1031 HOH HOH . K 6 HOH A 32 1032 1032 HOH HOH . K 6 HOH A 33 1033 1033 HOH HOH . K 6 HOH A 34 1034 1034 HOH HOH . K 6 HOH A 35 1035 1035 HOH HOH . K 6 HOH A 36 1036 1036 HOH HOH . K 6 HOH A 37 1037 1037 HOH HOH . K 6 HOH A 38 1038 1038 HOH HOH . K 6 HOH A 39 1039 1039 HOH HOH . K 6 HOH A 40 1040 1040 HOH HOH . K 6 HOH A 41 1041 1041 HOH HOH . K 6 HOH A 42 1042 1042 HOH HOH . K 6 HOH A 43 1043 1043 HOH HOH . K 6 HOH A 44 1044 1044 HOH HOH . K 6 HOH A 45 1045 1045 HOH HOH . K 6 HOH A 46 1046 1046 HOH HOH . K 6 HOH A 47 1047 1047 HOH HOH . K 6 HOH A 48 1048 1048 HOH HOH . K 6 HOH A 49 1049 1049 HOH HOH . K 6 HOH A 50 1050 1050 HOH HOH . K 6 HOH A 51 1051 1051 HOH HOH . K 6 HOH A 52 1052 1052 HOH HOH . K 6 HOH A 53 1053 1053 HOH HOH . K 6 HOH A 54 1054 1054 HOH HOH . K 6 HOH A 55 1055 1055 HOH HOH . K 6 HOH A 56 1056 1056 HOH HOH . K 6 HOH A 57 1057 1057 HOH HOH . K 6 HOH A 58 1058 1058 HOH HOH . K 6 HOH A 59 1059 1059 HOH HOH . K 6 HOH A 60 1060 1060 HOH HOH . K 6 HOH A 61 1061 1061 HOH HOH . K 6 HOH A 62 1062 1062 HOH HOH . K 6 HOH A 63 1063 1063 HOH HOH . K 6 HOH A 64 1064 1064 HOH HOH . K 6 HOH A 65 1065 1065 HOH HOH . K 6 HOH A 66 1066 1066 HOH HOH . K 6 HOH A 67 1067 1067 HOH HOH . K 6 HOH A 68 1068 1068 HOH HOH . K 6 HOH A 69 1069 1069 HOH HOH . K 6 HOH A 70 1070 1070 HOH HOH . K 6 HOH A 71 1071 1071 HOH HOH . K 6 HOH A 72 1072 1072 HOH HOH . K 6 HOH A 73 1073 1073 HOH HOH . K 6 HOH A 74 1074 1074 HOH HOH . K 6 HOH A 75 1075 1075 HOH HOH . K 6 HOH A 76 1076 1076 HOH HOH . K 6 HOH A 77 1077 1077 HOH HOH . K 6 HOH A 78 1078 1078 HOH HOH . K 6 HOH A 79 1079 1079 HOH HOH . K 6 HOH A 80 1080 1080 HOH HOH . K 6 HOH A 81 1081 1081 HOH HOH . K 6 HOH A 82 1082 1082 HOH HOH . K 6 HOH A 83 1083 1083 HOH HOH . K 6 HOH A 84 1084 1084 HOH HOH . K 6 HOH A 85 1085 1085 HOH HOH . K 6 HOH A 86 1086 1086 HOH HOH . K 6 HOH A 87 1087 1087 HOH HOH . K 6 HOH A 88 1088 1088 HOH HOH . K 6 HOH A 89 1089 1089 HOH HOH . K 6 HOH A 90 1090 1090 HOH HOH . K 6 HOH A 91 1091 1091 HOH HOH . K 6 HOH A 92 1092 1092 HOH HOH . K 6 HOH A 93 1093 1093 HOH HOH . K 6 HOH A 94 1094 1094 HOH HOH . K 6 HOH A 95 1095 1095 HOH HOH . K 6 HOH A 96 1096 1096 HOH HOH . K 6 HOH A 97 1097 1097 HOH HOH . K 6 HOH A 98 1098 1098 HOH HOH . K 6 HOH A 99 1099 1099 HOH HOH . K 6 HOH A 100 1100 1100 HOH HOH . K 6 HOH A 101 1101 1101 HOH HOH . K 6 HOH A 102 1102 1102 HOH HOH . K 6 HOH A 103 1103 1103 HOH HOH . K 6 HOH A 104 1104 1104 HOH HOH . K 6 HOH A 105 1105 1105 HOH HOH . K 6 HOH A 106 1106 1106 HOH HOH . K 6 HOH A 107 1107 1107 HOH HOH . K 6 HOH A 108 1108 1108 HOH HOH . K 6 HOH A 109 1109 1109 HOH HOH . K 6 HOH A 110 1110 1110 HOH HOH . K 6 HOH A 111 1111 1111 HOH HOH . K 6 HOH A 112 1112 1112 HOH HOH . K 6 HOH A 113 1113 1113 HOH HOH . K 6 HOH A 114 1114 1114 HOH HOH . K 6 HOH A 115 1115 1115 HOH HOH . K 6 HOH A 116 1116 1116 HOH HOH . K 6 HOH A 117 1117 1117 HOH HOH . K 6 HOH A 118 1118 1118 HOH HOH . K 6 HOH A 119 1119 1119 HOH HOH . K 6 HOH A 120 1120 1120 HOH HOH . K 6 HOH A 121 1121 1121 HOH HOH . K 6 HOH A 122 1122 1122 HOH HOH . K 6 HOH A 123 1123 1123 HOH HOH . K 6 HOH A 124 1124 1124 HOH HOH . K 6 HOH A 125 1125 1125 HOH HOH . K 6 HOH A 126 1126 1126 HOH HOH . K 6 HOH A 127 1127 1127 HOH HOH . K 6 HOH A 128 1128 1128 HOH HOH . K 6 HOH A 129 1129 1129 HOH HOH . K 6 HOH A 130 1130 1130 HOH HOH . K 6 HOH A 131 1131 1131 HOH HOH . K 6 HOH A 132 1132 1132 HOH HOH . K 6 HOH A 133 1133 1133 HOH HOH . K 6 HOH A 134 1134 1134 HOH HOH . K 6 HOH A 135 1135 1135 HOH HOH . K 6 HOH A 136 1136 1136 HOH HOH . K 6 HOH A 137 1137 1137 HOH HOH . K 6 HOH A 138 1138 1138 HOH HOH . K 6 HOH A 139 1139 1139 HOH HOH . K 6 HOH A 140 1140 1140 HOH HOH . K 6 HOH A 141 1141 1141 HOH HOH . K 6 HOH A 142 1142 1142 HOH HOH . K 6 HOH A 143 1143 1143 HOH HOH . K 6 HOH A 144 1144 1144 HOH HOH . K 6 HOH A 145 1145 1145 HOH HOH . K 6 HOH A 146 1146 1146 HOH HOH . K 6 HOH A 147 1147 1147 HOH HOH . K 6 HOH A 148 1148 1148 HOH HOH . K 6 HOH A 149 1149 1149 HOH HOH . K 6 HOH A 150 1150 1150 HOH HOH . K 6 HOH A 151 1151 1151 HOH HOH . K 6 HOH A 152 1152 1152 HOH HOH . K 6 HOH A 153 1153 1153 HOH HOH . K 6 HOH A 154 1154 1154 HOH HOH . K 6 HOH A 155 1155 1155 HOH HOH . K 6 HOH A 156 1156 1156 HOH HOH . K 6 HOH A 157 1157 1157 HOH HOH . K 6 HOH A 158 1158 1158 HOH HOH . K 6 HOH A 159 1159 1159 HOH HOH . K 6 HOH A 160 1160 1160 HOH HOH . K 6 HOH A 161 1161 1161 HOH HOH . K 6 HOH A 162 1162 1162 HOH HOH . K 6 HOH A 163 1163 1163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 60.828 61.131 -2.494 0.66 16.22 ? C1 GOL 802 A 1 HETATM 2 O O1 GOL . . . I 5 60.824 60.694 -3.865 0.66 28.76 ? O1 GOL 802 A 1 HETATM 3 C C2 GOL . . . I 5 60.217 60.015 -1.61 0.66 21.11 ? C2 GOL 802 A 1 HETATM 4 O O2 GOL . . . I 5 59.728 60.611 -0.408 0.66 29.88 ? O2 GOL 802 A 1 HETATM 5 C C3 GOL . . . I 5 61.259 58.923 -1.265 0.66 28.03 ? C3 GOL 802 A 1 HETATM 6 O O3 GOL . . . I 5 60.944 58.323 0 0.66 32.94 ? O3 GOL 802 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #