data_3MSX # _model_server_result.job_id w3yYSz1JvMuk7Z_wbUIfpw _model_server_result.datetime_utc '2025-01-03 19:34:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3msx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 3MSX # _exptl.entry_id 3MSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MSX _cell.length_a 69.057 _cell.length_b 88.977 _cell.length_c 137.725 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 19 A THR 19 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A OG1 THR 37 A THR 37 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 C O1B GDP . A GDP 181 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 C O2B GDP . A GDP 181 1_555 E MG MGF . A MGF 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 F O HOH . A HOH 235 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 F O HOH . A HOH 236 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc7 F O HOH . A HOH 237 1_555 E MG MGF . A MGF 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3MSX _atom_sites.fract_transf_matrix[1][1] 0.014481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP A 1 181 1 GDP GDP . D 4 MG A 1 401 401 MG MG . E 5 MGF A 1 402 402 MGF MGF . F 6 HOH A 1 182 1 HOH HOH . F 6 HOH A 2 183 183 HOH HOH . F 6 HOH A 3 184 4 HOH HOH . F 6 HOH A 4 185 185 HOH HOH . F 6 HOH A 5 186 186 HOH HOH . F 6 HOH A 6 187 5 HOH HOH . F 6 HOH A 7 188 10 HOH HOH . F 6 HOH A 8 189 11 HOH HOH . F 6 HOH A 9 190 190 HOH HOH . F 6 HOH A 10 191 191 HOH HOH . F 6 HOH A 11 192 12 HOH HOH . F 6 HOH A 12 193 13 HOH HOH . F 6 HOH A 13 194 14 HOH HOH . F 6 HOH A 14 195 195 HOH HOH . F 6 HOH A 15 196 15 HOH HOH . F 6 HOH A 16 197 16 HOH HOH . F 6 HOH A 17 198 198 HOH HOH . F 6 HOH A 18 199 199 HOH HOH . F 6 HOH A 19 200 200 HOH HOH . F 6 HOH A 20 201 17 HOH HOH . F 6 HOH A 21 202 21 HOH HOH . F 6 HOH A 22 203 23 HOH HOH . F 6 HOH A 23 204 27 HOH HOH . F 6 HOH A 24 205 30 HOH HOH . F 6 HOH A 25 206 206 HOH HOH . F 6 HOH A 26 207 32 HOH HOH . F 6 HOH A 27 208 208 HOH HOH . F 6 HOH A 28 209 209 HOH HOH . F 6 HOH A 29 210 34 HOH HOH . F 6 HOH A 30 211 211 HOH HOH . F 6 HOH A 31 212 38 HOH HOH . F 6 HOH A 32 213 39 HOH HOH . F 6 HOH A 33 214 40 HOH HOH . F 6 HOH A 34 215 41 HOH HOH . F 6 HOH A 35 216 216 HOH HOH . F 6 HOH A 36 217 217 HOH HOH . F 6 HOH A 37 218 218 HOH HOH . F 6 HOH A 38 219 42 HOH HOH . F 6 HOH A 39 220 43 HOH HOH . F 6 HOH A 40 221 44 HOH HOH . F 6 HOH A 41 222 222 HOH HOH . F 6 HOH A 42 223 223 HOH HOH . F 6 HOH A 43 224 47 HOH HOH . F 6 HOH A 44 225 225 HOH HOH . F 6 HOH A 45 226 226 HOH HOH . F 6 HOH A 46 227 50 HOH HOH . F 6 HOH A 47 228 228 HOH HOH . F 6 HOH A 48 229 53 HOH HOH . F 6 HOH A 49 230 54 HOH HOH . F 6 HOH A 50 231 55 HOH HOH . F 6 HOH A 51 232 232 HOH HOH . F 6 HOH A 52 233 233 HOH HOH . F 6 HOH A 53 234 234 HOH HOH . F 6 HOH A 54 235 235 HOH HOH . F 6 HOH A 55 236 236 HOH HOH . F 6 HOH A 56 237 237 HOH HOH . F 6 HOH A 57 238 238 HOH HOH . F 6 HOH A 58 239 239 HOH HOH . F 6 HOH A 59 240 56 HOH HOH . F 6 HOH A 60 241 241 HOH HOH . F 6 HOH A 61 242 242 HOH HOH . F 6 HOH A 62 243 57 HOH HOH . F 6 HOH A 63 244 244 HOH HOH . F 6 HOH A 64 245 245 HOH HOH . F 6 HOH A 65 246 246 HOH HOH . F 6 HOH A 66 247 247 HOH HOH . F 6 HOH A 67 248 59 HOH HOH . F 6 HOH A 68 249 60 HOH HOH . F 6 HOH A 69 250 63 HOH HOH . F 6 HOH A 70 251 64 HOH HOH . F 6 HOH A 71 252 66 HOH HOH . F 6 HOH A 72 253 67 HOH HOH . F 6 HOH A 73 254 68 HOH HOH . F 6 HOH A 74 255 70 HOH HOH . F 6 HOH A 75 256 71 HOH HOH . F 6 HOH A 76 257 72 HOH HOH . F 6 HOH A 77 258 73 HOH HOH . F 6 HOH A 78 259 76 HOH HOH . F 6 HOH A 79 260 77 HOH HOH . F 6 HOH A 80 261 78 HOH HOH . F 6 HOH A 81 262 79 HOH HOH . F 6 HOH A 82 263 82 HOH HOH . F 6 HOH A 83 264 83 HOH HOH . F 6 HOH A 84 265 85 HOH HOH . F 6 HOH A 85 266 91 HOH HOH . F 6 HOH A 86 267 92 HOH HOH . F 6 HOH A 87 268 95 HOH HOH . F 6 HOH A 88 269 98 HOH HOH . F 6 HOH A 89 270 99 HOH HOH . F 6 HOH A 90 271 102 HOH HOH . F 6 HOH A 91 272 105 HOH HOH . F 6 HOH A 92 273 106 HOH HOH . F 6 HOH A 93 274 108 HOH HOH . F 6 HOH A 94 275 109 HOH HOH . F 6 HOH A 95 276 110 HOH HOH . F 6 HOH A 96 277 111 HOH HOH . F 6 HOH A 97 278 112 HOH HOH . F 6 HOH A 98 279 115 HOH HOH . F 6 HOH A 99 280 117 HOH HOH . F 6 HOH A 100 281 119 HOH HOH . F 6 HOH A 101 282 122 HOH HOH . F 6 HOH A 102 283 123 HOH HOH . F 6 HOH A 103 284 124 HOH HOH . F 6 HOH A 104 285 128 HOH HOH . F 6 HOH A 105 286 133 HOH HOH . F 6 HOH A 106 287 134 HOH HOH . F 6 HOH A 107 288 137 HOH HOH . F 6 HOH A 108 289 142 HOH HOH . F 6 HOH A 109 290 145 HOH HOH . F 6 HOH A 110 291 146 HOH HOH . F 6 HOH A 111 292 148 HOH HOH . F 6 HOH A 112 293 149 HOH HOH . F 6 HOH A 113 294 152 HOH HOH . F 6 HOH A 114 295 153 HOH HOH . F 6 HOH A 115 296 154 HOH HOH . F 6 HOH A 116 297 156 HOH HOH . F 6 HOH A 117 298 160 HOH HOH . F 6 HOH A 118 299 162 HOH HOH . F 6 HOH A 119 300 164 HOH HOH . F 6 HOH A 120 301 167 HOH HOH . F 6 HOH A 121 302 169 HOH HOH . F 6 HOH A 122 303 170 HOH HOH . F 6 HOH A 123 304 171 HOH HOH . F 6 HOH A 124 305 173 HOH HOH . F 6 HOH A 125 306 174 HOH HOH . F 6 HOH A 126 307 179 HOH HOH . F 6 HOH A 127 308 180 HOH HOH . G 6 HOH B 1 2 2 HOH HOH . G 6 HOH B 2 3 3 HOH HOH . G 6 HOH B 3 6 6 HOH HOH . G 6 HOH B 4 7 7 HOH HOH . G 6 HOH B 5 8 8 HOH HOH . G 6 HOH B 6 9 9 HOH HOH . G 6 HOH B 7 19 19 HOH HOH . G 6 HOH B 8 20 20 HOH HOH . G 6 HOH B 9 22 22 HOH HOH . G 6 HOH B 10 25 25 HOH HOH . G 6 HOH B 11 26 26 HOH HOH . G 6 HOH B 12 28 28 HOH HOH . G 6 HOH B 13 31 31 HOH HOH . G 6 HOH B 14 33 33 HOH HOH . G 6 HOH B 15 35 35 HOH HOH . G 6 HOH B 16 36 36 HOH HOH . G 6 HOH B 17 37 37 HOH HOH . G 6 HOH B 18 46 46 HOH HOH . G 6 HOH B 19 49 49 HOH HOH . G 6 HOH B 20 52 52 HOH HOH . G 6 HOH B 21 61 61 HOH HOH . G 6 HOH B 22 62 62 HOH HOH . G 6 HOH B 23 65 65 HOH HOH . G 6 HOH B 24 69 69 HOH HOH . G 6 HOH B 25 74 74 HOH HOH . G 6 HOH B 26 75 75 HOH HOH . G 6 HOH B 27 80 80 HOH HOH . G 6 HOH B 28 81 81 HOH HOH . G 6 HOH B 29 84 84 HOH HOH . G 6 HOH B 30 86 86 HOH HOH . G 6 HOH B 31 87 87 HOH HOH . G 6 HOH B 32 88 88 HOH HOH . G 6 HOH B 33 89 89 HOH HOH . G 6 HOH B 34 90 90 HOH HOH . G 6 HOH B 35 93 93 HOH HOH . G 6 HOH B 36 94 94 HOH HOH . G 6 HOH B 37 96 96 HOH HOH . G 6 HOH B 38 97 97 HOH HOH . G 6 HOH B 39 103 103 HOH HOH . G 6 HOH B 40 104 104 HOH HOH . G 6 HOH B 41 107 107 HOH HOH . G 6 HOH B 42 113 113 HOH HOH . G 6 HOH B 43 114 114 HOH HOH . G 6 HOH B 44 116 116 HOH HOH . G 6 HOH B 45 118 118 HOH HOH . G 6 HOH B 46 120 120 HOH HOH . G 6 HOH B 47 121 121 HOH HOH . G 6 HOH B 48 126 126 HOH HOH . G 6 HOH B 49 127 127 HOH HOH . G 6 HOH B 50 129 129 HOH HOH . G 6 HOH B 51 130 130 HOH HOH . G 6 HOH B 52 131 131 HOH HOH . G 6 HOH B 53 132 132 HOH HOH . G 6 HOH B 54 135 135 HOH HOH . G 6 HOH B 55 136 136 HOH HOH . G 6 HOH B 56 138 138 HOH HOH . G 6 HOH B 57 139 139 HOH HOH . G 6 HOH B 58 141 141 HOH HOH . G 6 HOH B 59 143 143 HOH HOH . G 6 HOH B 60 144 144 HOH HOH . G 6 HOH B 61 147 147 HOH HOH . G 6 HOH B 62 151 151 HOH HOH . G 6 HOH B 63 155 155 HOH HOH . G 6 HOH B 64 157 157 HOH HOH . G 6 HOH B 65 158 158 HOH HOH . G 6 HOH B 66 159 159 HOH HOH . G 6 HOH B 67 161 161 HOH HOH . G 6 HOH B 68 163 163 HOH HOH . G 6 HOH B 69 166 166 HOH HOH . G 6 HOH B 70 168 168 HOH HOH . G 6 HOH B 71 172 172 HOH HOH . G 6 HOH B 72 176 176 HOH HOH . G 6 HOH B 73 177 177 HOH HOH . G 6 HOH B 74 178 178 HOH HOH . G 6 HOH B 75 181 181 HOH HOH . G 6 HOH B 76 182 182 HOH HOH . G 6 HOH B 77 184 184 HOH HOH . G 6 HOH B 78 192 192 HOH HOH . G 6 HOH B 79 193 193 HOH HOH . G 6 HOH B 80 194 194 HOH HOH . G 6 HOH B 81 196 196 HOH HOH . G 6 HOH B 82 197 197 HOH HOH . G 6 HOH B 83 201 201 HOH HOH . G 6 HOH B 84 202 202 HOH HOH . G 6 HOH B 85 203 203 HOH HOH . G 6 HOH B 86 205 205 HOH HOH . G 6 HOH B 87 213 213 HOH HOH . G 6 HOH B 88 214 214 HOH HOH . G 6 HOH B 89 220 220 HOH HOH . G 6 HOH B 90 221 221 HOH HOH . G 6 HOH B 91 224 224 HOH HOH . G 6 HOH B 92 227 227 HOH HOH . G 6 HOH B 93 230 230 HOH HOH . G 6 HOH B 94 240 240 HOH HOH . G 6 HOH B 95 243 243 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 30.34 _atom_site.Cartn_y 36.395 _atom_site.Cartn_z 17.144 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #