data_3MTG # _model_server_result.job_id ss9ooR6wgvR7TvvIupd26g _model_server_result.datetime_utc '2024-11-22 21:46:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mtg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3MTG # _exptl.entry_id 3MTG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.27 _cell.angle_gamma 90 _cell.entry_id 3MTG _cell.length_a 186.24 _cell.length_b 68.6 _cell.length_c 90.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MTG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 38.577546 0 -81.72215 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3MTG _atom_sites.fract_transf_matrix[1][1] 0.005369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002535 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 1 1 NAD NAD . D 2 NAD B 1 1 1 NAD NAD . E 3 HOH A 1 3 3 HOH HOH . E 3 HOH A 2 4 4 HOH HOH . E 3 HOH A 3 6 6 HOH HOH . E 3 HOH A 4 7 7 HOH HOH . E 3 HOH A 5 9 9 HOH HOH . E 3 HOH A 6 11 11 HOH HOH . E 3 HOH A 7 12 12 HOH HOH . E 3 HOH A 8 13 13 HOH HOH . E 3 HOH A 9 14 14 HOH HOH . E 3 HOH A 10 20 20 HOH HOH . E 3 HOH A 11 26 26 HOH HOH . E 3 HOH A 12 29 29 HOH HOH . E 3 HOH A 13 32 32 HOH HOH . E 3 HOH A 14 42 42 HOH HOH . E 3 HOH A 15 45 45 HOH HOH . E 3 HOH A 16 46 46 HOH HOH . E 3 HOH A 17 49 49 HOH HOH . E 3 HOH A 18 53 53 HOH HOH . E 3 HOH A 19 57 57 HOH HOH . E 3 HOH A 20 60 60 HOH HOH . E 3 HOH A 21 61 61 HOH HOH . E 3 HOH A 22 62 62 HOH HOH . E 3 HOH A 23 63 63 HOH HOH . E 3 HOH A 24 65 65 HOH HOH . E 3 HOH A 25 72 72 HOH HOH . E 3 HOH A 26 78 78 HOH HOH . E 3 HOH A 27 80 80 HOH HOH . E 3 HOH A 28 84 84 HOH HOH . E 3 HOH A 29 86 86 HOH HOH . E 3 HOH A 30 531 87 HOH HOH . E 3 HOH A 31 532 88 HOH HOH . E 3 HOH A 32 533 89 HOH HOH . E 3 HOH A 33 534 90 HOH HOH . E 3 HOH A 34 535 92 HOH HOH . E 3 HOH A 35 536 93 HOH HOH . E 3 HOH A 36 537 94 HOH HOH . E 3 HOH A 37 538 96 HOH HOH . E 3 HOH A 38 539 97 HOH HOH . E 3 HOH A 39 540 98 HOH HOH . E 3 HOH A 40 541 100 HOH HOH . E 3 HOH A 41 542 103 HOH HOH . E 3 HOH A 42 543 104 HOH HOH . E 3 HOH A 43 544 107 HOH HOH . E 3 HOH A 44 545 110 HOH HOH . E 3 HOH A 45 546 113 HOH HOH . E 3 HOH A 46 547 116 HOH HOH . E 3 HOH A 47 548 117 HOH HOH . E 3 HOH A 48 549 127 HOH HOH . E 3 HOH A 49 550 128 HOH HOH . E 3 HOH A 50 551 131 HOH HOH . E 3 HOH A 51 552 138 HOH HOH . E 3 HOH A 52 553 139 HOH HOH . E 3 HOH A 53 554 141 HOH HOH . E 3 HOH A 54 555 144 HOH HOH . E 3 HOH A 55 556 147 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 5 5 HOH HOH . F 3 HOH B 3 10 10 HOH HOH . F 3 HOH B 4 15 15 HOH HOH . F 3 HOH B 5 16 16 HOH HOH . F 3 HOH B 6 17 17 HOH HOH . F 3 HOH B 7 18 18 HOH HOH . F 3 HOH B 8 21 21 HOH HOH . F 3 HOH B 9 24 24 HOH HOH . F 3 HOH B 10 27 27 HOH HOH . F 3 HOH B 11 28 28 HOH HOH . F 3 HOH B 12 30 30 HOH HOH . F 3 HOH B 13 33 33 HOH HOH . F 3 HOH B 14 34 34 HOH HOH . F 3 HOH B 15 35 35 HOH HOH . F 3 HOH B 16 36 36 HOH HOH . F 3 HOH B 17 37 37 HOH HOH . F 3 HOH B 18 39 39 HOH HOH . F 3 HOH B 19 40 40 HOH HOH . F 3 HOH B 20 41 41 HOH HOH . F 3 HOH B 21 43 43 HOH HOH . F 3 HOH B 22 47 47 HOH HOH . F 3 HOH B 23 48 48 HOH HOH . F 3 HOH B 24 51 51 HOH HOH . F 3 HOH B 25 52 52 HOH HOH . F 3 HOH B 26 54 54 HOH HOH . F 3 HOH B 27 56 56 HOH HOH . F 3 HOH B 28 59 59 HOH HOH . F 3 HOH B 29 67 67 HOH HOH . F 3 HOH B 30 68 68 HOH HOH . F 3 HOH B 31 69 69 HOH HOH . F 3 HOH B 32 70 70 HOH HOH . F 3 HOH B 33 74 74 HOH HOH . F 3 HOH B 34 75 75 HOH HOH . F 3 HOH B 35 76 76 HOH HOH . F 3 HOH B 36 83 83 HOH HOH . F 3 HOH B 37 85 85 HOH HOH . F 3 HOH B 38 531 1 HOH HOH . F 3 HOH B 39 532 102 HOH HOH . F 3 HOH B 40 533 106 HOH HOH . F 3 HOH B 41 534 108 HOH HOH . F 3 HOH B 42 535 111 HOH HOH . F 3 HOH B 43 536 115 HOH HOH . F 3 HOH B 44 537 118 HOH HOH . F 3 HOH B 45 538 119 HOH HOH . F 3 HOH B 46 539 120 HOH HOH . F 3 HOH B 47 540 121 HOH HOH . F 3 HOH B 48 541 124 HOH HOH . F 3 HOH B 49 542 125 HOH HOH . F 3 HOH B 50 543 126 HOH HOH . F 3 HOH B 51 544 129 HOH HOH . F 3 HOH B 52 545 133 HOH HOH . F 3 HOH B 53 546 134 HOH HOH . F 3 HOH B 54 547 135 HOH HOH . F 3 HOH B 55 548 136 HOH HOH . F 3 HOH B 56 549 142 HOH HOH . F 3 HOH B 57 550 143 HOH HOH . F 3 HOH B 58 551 145 HOH HOH . F 3 HOH B 59 552 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 2 39.933 27.45 -47.363 1 50.79 ? PA NAD 1 B 1 HETATM 2 O O1A NAD . . . D 2 41.336 27.017 -47.109 1 50.9 ? O1A NAD 1 B 1 HETATM 3 O O2A NAD . . . D 2 39.524 28.562 -46.474 1 51.31 ? O2A NAD 1 B 1 HETATM 4 O O5B NAD . . . D 2 38.967 26.186 -47.26 1 42.42 ? O5B NAD 1 B 1 HETATM 5 C C5B NAD . . . D 2 39.226 24.999 -47.948 1 42.55 ? C5B NAD 1 B 1 HETATM 6 C C4B NAD . . . D 2 38.579 23.971 -47.045 1 47.31 ? C4B NAD 1 B 1 HETATM 7 O O4B NAD . . . D 2 38.366 22.704 -47.627 1 46.9 ? O4B NAD 1 B 1 HETATM 8 C C3B NAD . . . D 2 39.431 23.79 -45.803 1 54.24 ? C3B NAD 1 B 1 HETATM 9 O O3B NAD . . . D 2 38.6 23.957 -44.665 1 57.95 ? O3B NAD 1 B 1 HETATM 10 C C2B NAD . . . D 2 39.897 22.358 -45.927 1 54.87 ? C2B NAD 1 B 1 HETATM 11 O O2B NAD . . . D 2 40.136 21.808 -44.645 1 59.33 ? O2B NAD 1 B 1 HETATM 12 C C1B NAD . . . D 2 38.734 21.719 -46.681 1 49.72 ? C1B NAD 1 B 1 HETATM 13 N N9A NAD . . . D 2 39.173 20.522 -47.408 1 49.32 ? N9A NAD 1 B 1 HETATM 14 C C8A NAD . . . D 2 40.391 20.375 -48.046 1 49.7 ? C8A NAD 1 B 1 HETATM 15 N N7A NAD . . . D 2 40.418 19.154 -48.628 1 48.98 ? N7A NAD 1 B 1 HETATM 16 C C5A NAD . . . D 2 39.233 18.534 -48.387 1 46.99 ? C5A NAD 1 B 1 HETATM 17 C C6A NAD . . . D 2 38.745 17.299 -48.781 1 48.13 ? C6A NAD 1 B 1 HETATM 18 N N6A NAD . . . D 2 39.347 16.702 -49.811 1 50.63 ? N6A NAD 1 B 1 HETATM 19 N N1A NAD . . . D 2 37.465 16.913 -48.396 1 48.01 ? N1A NAD 1 B 1 HETATM 20 C C2A NAD . . . D 2 36.68 17.773 -47.639 1 46.29 ? C2A NAD 1 B 1 HETATM 21 N N3A NAD . . . D 2 37.177 19.01 -47.265 1 45.71 ? N3A NAD 1 B 1 HETATM 22 C C4A NAD . . . D 2 38.421 19.398 -47.656 1 46.89 ? C4A NAD 1 B 1 HETATM 23 O O3 NAD . . . D 2 39.73 27.858 -48.902 1 52.71 ? O3 NAD 1 B 1 HETATM 24 P PN NAD . . . D 2 38.544 28.743 -49.532 1 50.84 ? PN NAD 1 B 1 HETATM 25 O O1N NAD . . . D 2 38.95 30.156 -49.452 1 50.99 ? O1N NAD 1 B 1 HETATM 26 O O2N NAD . . . D 2 37.208 28.282 -49.099 1 52.36 ? O2N NAD 1 B 1 HETATM 27 O O5D NAD . . . D 2 38.695 28.312 -51.064 1 54.18 ? O5D NAD 1 B 1 HETATM 28 C C5D NAD . . . D 2 38.522 26.97 -51.465 1 56.17 ? C5D NAD 1 B 1 HETATM 29 C C4D NAD . . . D 2 39.042 26.826 -52.895 1 57.59 ? C4D NAD 1 B 1 HETATM 30 O O4D NAD . . . D 2 38.275 27.668 -53.737 1 58.18 ? O4D NAD 1 B 1 HETATM 31 C C3D NAD . . . D 2 40.479 27.311 -53.007 1 58.94 ? C3D NAD 1 B 1 HETATM 32 O O3D NAD . . . D 2 41.102 26.602 -54.062 1 60.49 ? O3D NAD 1 B 1 HETATM 33 C C2D NAD . . . D 2 40.301 28.751 -53.444 1 59.02 ? C2D NAD 1 B 1 HETATM 34 O O2D NAD . . . D 2 41.46 29.242 -54.091 1 59.82 ? O2D NAD 1 B 1 HETATM 35 C C1D NAD . . . D 2 39.093 28.63 -54.367 1 57.92 ? C1D NAD 1 B 1 HETATM 36 N N1N NAD . . . D 2 38.372 29.893 -54.606 1 56.64 ? N1N NAD 1 B 1 HETATM 37 C C2N NAD . . . D 2 37.02 29.896 -54.835 1 57.85 ? C2N NAD 1 B 1 HETATM 38 C C3N NAD . . . D 2 36.352 31.103 -55.08 1 58.36 ? C3N NAD 1 B 1 HETATM 39 C C7N NAD . . . D 2 34.86 31.194 -55.19 1 55.89 ? C7N NAD 1 B 1 HETATM 40 O O7N NAD . . . D 2 34.303 32.479 -55.328 1 58.27 ? O7N NAD 1 B 1 HETATM 41 N N7N NAD . . . D 2 34.095 30.105 -55.134 1 52.66 ? N7N NAD 1 B 1 HETATM 42 C C4N NAD . . . D 2 37.067 32.295 -55.078 1 59.77 ? C4N NAD 1 B 1 HETATM 43 C C5N NAD . . . D 2 38.439 32.278 -54.863 1 60.47 ? C5N NAD 1 B 1 HETATM 44 C C6N NAD . . . D 2 39.079 31.065 -54.649 1 58.94 ? C6N NAD 1 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #