data_3MUP # _model_server_result.job_id YhXNgbb59ZQ4yGdCz1DT0A _model_server_result.datetime_utc '2024-12-22 05:55:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":600}' # _entry.id 3MUP # _exptl.entry_id 3MUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.652 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,6S,7R,9aS)-6-{[(2S)-2-aminobutanoyl]amino}-7-(2-aminoethyl)-N-(diphenylmethyl)-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.48 _cell.angle_gamma 90 _cell.entry_id 3MUP _cell.length_a 71.63 _cell.length_b 79.79 _cell.length_c 98.41 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F ZN ZN . A ZN 1 1_555 A SG CYS 57 A CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc2 F ZN ZN . A ZN 1 1_555 A SG CYS 60 A CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 F ZN ZN . A ZN 1 1_555 A NE2 HIS 77 A HIS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 F ZN ZN . A ZN 1 1_555 A SG CYS 84 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 H ZN ZN . B ZN 2 1_555 B SG CYS 57 B CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 H ZN ZN . B ZN 2 1_555 B SG CYS 60 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc7 H ZN ZN . B ZN 2 1_555 B NE2 HIS 77 B HIS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc8 H ZN ZN . B ZN 2 1_555 B SG CYS 84 B CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc9 J ZN ZN . C ZN 3 1_555 C SG CYS 57 C CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 J ZN ZN . C ZN 3 1_555 C SG CYS 60 C CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 J ZN ZN . C ZN 3 1_555 C NE2 HIS 77 C HIS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 J ZN ZN . C ZN 3 1_555 C SG CYS 84 C CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc13 L ZN ZN . D ZN 4 1_555 D SG CYS 57 D CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc14 L ZN ZN . D ZN 4 1_555 D SG CYS 60 D CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc15 L ZN ZN . D ZN 4 1_555 D NE2 HIS 77 D HIS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc16 L ZN ZN . D ZN 4 1_555 D SG CYS 84 D CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'C29 H39 N5 O3' _chem_comp.formula_weight 505.652 _chem_comp.id SMK _chem_comp.mon_nstd_flag . _chem_comp.name (3S,6S,7R,9aS)-6-{[(2S)-2-aminobutanoyl]amino}-7-(2-aminoethyl)-N-(diphenylmethyl)-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CB SMK sing 290 n n CB CA SMK sing 291 n n CA N SMK sing 292 n n CA C SMK sing 293 n n C O SMK doub 294 n n C NAY SMK sing 295 n n NAY CBI SMK sing 296 n n CBI CBB SMK sing 297 n n CBI CBF SMK sing 298 n n CBB OAF SMK doub 299 n n CBB NBK SMK sing 300 n n NBK CBG SMK sing 301 n n NBK CBJ SMK sing 302 n n CBF CAS SMK sing 303 n n CBF CAT SMK sing 304 n n CAS CAQ SMK sing 305 n n CAQ NAB SMK sing 306 n n CAT CAU SMK sing 307 n n CAU CBG SMK sing 308 n n CBG CAV SMK sing 309 n n CAV CAW SMK sing 310 n n CAW CBJ SMK sing 311 n n CBJ CBA SMK sing 312 n n CBA OAE SMK doub 313 n n CBA NAX SMK sing 314 n n NAX CBH SMK sing 315 n n CBH CBC SMK sing 316 n n CBH CBD SMK sing 317 n n CBC CAM SMK doub 318 n y CBC CAN SMK sing 319 n y CAM CAI SMK sing 320 n y CAI CAG SMK doub 321 n y CAG CAJ SMK sing 322 n y CAJ CAN SMK doub 323 n y CBD CAO SMK doub 324 n y CBD CAP SMK sing 325 n y CAO CAK SMK sing 326 n y CAK CAH SMK doub 327 n y CAH CAL SMK sing 328 n y CAL CAP SMK doub 329 n y CAA HAA SMK sing 330 n n CAA HAAA SMK sing 331 n n CAA HAAB SMK sing 332 n n CB HB SMK sing 333 n n CB HBA SMK sing 334 n n CA HA SMK sing 335 n n N HN SMK sing 336 n n N HNA SMK sing 337 n n NAY HNAY SMK sing 338 n n CBI HBI SMK sing 339 n n CBF HBF SMK sing 340 n n CAS HAS SMK sing 341 n n CAS HASA SMK sing 342 n n CAQ HAQ SMK sing 343 n n CAQ HAQA SMK sing 344 n n NAB HNAB SMK sing 345 n n NAB HNAA SMK sing 346 n n CAT HAT SMK sing 347 n n CAT HATA SMK sing 348 n n CAU HAU SMK sing 349 n n CAU HAUA SMK sing 350 n n CBG HBG SMK sing 351 n n CAV HAV SMK sing 352 n n CAV HAVA SMK sing 353 n n CAW HAW SMK sing 354 n n CAW HAWA SMK sing 355 n n CBJ HBJ SMK sing 356 n n NAX HNAX SMK sing 357 n n CBH HBH SMK sing 358 n n CAM HAM SMK sing 359 n n CAI HAI SMK sing 360 n n CAG HAG SMK sing 361 n n CAJ HAJ SMK sing 362 n n CAN HAN SMK sing 363 n n CAO HAO SMK sing 364 n n CAK HAK SMK sing 365 n n CAH HAH SMK sing 366 n n CAL HAL SMK sing 367 n n CAP HAP SMK sing 368 n n # _atom_sites.entry_id 3MUP _atom_sites.fract_transf_matrix[1][1] 0.013961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000605 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SMK A 1 600 600 SMK SMK . F 3 ZN A 1 1 1 ZN ZN . G 2 SMK B 1 600 600 SMK SMK . H 3 ZN B 1 2 2 ZN ZN . I 2 SMK C 1 600 600 SMK SMK . J 3 ZN C 1 3 3 ZN ZN . K 2 SMK D 1 600 600 SMK SMK . L 3 ZN D 1 4 4 ZN ZN . M 4 HOH A 1 2 2 HOH HOH . M 4 HOH A 2 9 9 HOH HOH . M 4 HOH A 3 10 10 HOH HOH . M 4 HOH A 4 24 24 HOH HOH . M 4 HOH A 5 28 28 HOH HOH . M 4 HOH A 6 31 31 HOH HOH . M 4 HOH A 7 34 34 HOH HOH . M 4 HOH A 8 35 35 HOH HOH . M 4 HOH A 9 38 38 HOH HOH . M 4 HOH A 10 44 44 HOH HOH . M 4 HOH A 11 89 89 HOH HOH . M 4 HOH A 12 95 95 HOH HOH . M 4 HOH A 13 170 170 HOH HOH . M 4 HOH A 14 199 199 HOH HOH . M 4 HOH A 15 201 201 HOH HOH . M 4 HOH A 16 217 217 HOH HOH . M 4 HOH A 17 235 235 HOH HOH . M 4 HOH A 18 236 236 HOH HOH . M 4 HOH A 19 366 248 HOH HOH . M 4 HOH A 20 367 249 HOH HOH . M 4 HOH A 21 368 259 HOH HOH . M 4 HOH A 22 369 260 HOH HOH . M 4 HOH A 23 370 261 HOH HOH . N 4 HOH B 1 172 172 HOH HOH . N 4 HOH B 2 174 174 HOH HOH . N 4 HOH B 3 176 176 HOH HOH . N 4 HOH B 4 181 181 HOH HOH . N 4 HOH B 5 182 182 HOH HOH . N 4 HOH B 6 183 183 HOH HOH . N 4 HOH B 7 204 204 HOH HOH . N 4 HOH B 8 205 205 HOH HOH . N 4 HOH B 9 206 206 HOH HOH . N 4 HOH B 10 209 209 HOH HOH . N 4 HOH B 11 211 211 HOH HOH . N 4 HOH B 12 228 228 HOH HOH . N 4 HOH B 13 229 229 HOH HOH . N 4 HOH B 14 233 233 HOH HOH . N 4 HOH B 15 234 234 HOH HOH . N 4 HOH B 16 239 239 HOH HOH . N 4 HOH B 17 240 240 HOH HOH . N 4 HOH B 18 366 250 HOH HOH . N 4 HOH B 19 367 251 HOH HOH . N 4 HOH B 20 368 258 HOH HOH . O 4 HOH C 1 80 80 HOH HOH . O 4 HOH C 2 189 189 HOH HOH . O 4 HOH C 3 202 202 HOH HOH . O 4 HOH C 4 212 212 HOH HOH . O 4 HOH C 5 213 213 HOH HOH . O 4 HOH C 6 214 214 HOH HOH . O 4 HOH C 7 215 215 HOH HOH . O 4 HOH C 8 216 216 HOH HOH . O 4 HOH C 9 220 220 HOH HOH . O 4 HOH C 10 222 222 HOH HOH . O 4 HOH C 11 242 242 HOH HOH . O 4 HOH C 12 243 243 HOH HOH . O 4 HOH C 13 366 253 HOH HOH . O 4 HOH C 14 367 254 HOH HOH . O 4 HOH C 15 368 255 HOH HOH . O 4 HOH C 16 369 257 HOH HOH . O 4 HOH C 17 370 262 HOH HOH . O 4 HOH C 18 371 263 HOH HOH . P 4 HOH D 1 173 173 HOH HOH . P 4 HOH D 2 180 180 HOH HOH . P 4 HOH D 3 185 185 HOH HOH . P 4 HOH D 4 187 187 HOH HOH . P 4 HOH D 5 188 188 HOH HOH . P 4 HOH D 6 191 191 HOH HOH . P 4 HOH D 7 193 193 HOH HOH . P 4 HOH D 8 197 197 HOH HOH . P 4 HOH D 9 208 208 HOH HOH . P 4 HOH D 10 210 210 HOH HOH . P 4 HOH D 11 218 218 HOH HOH . P 4 HOH D 12 225 225 HOH HOH . P 4 HOH D 13 226 226 HOH HOH . P 4 HOH D 14 231 231 HOH HOH . P 4 HOH D 15 232 232 HOH HOH . P 4 HOH D 16 241 241 HOH HOH . P 4 HOH D 17 366 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA SMK . . . I 2 21.248 -30.397 19.133 1 25.46 ? CAA SMK 600 C 1 HETATM 2 C CB SMK . . . I 2 20.014 -29.841 19.862 1 48.25 ? CB SMK 600 C 1 HETATM 3 C CA SMK . . . I 2 20.361 -28.594 20.672 1 45.65 ? CA SMK 600 C 1 HETATM 4 N N SMK . . . I 2 19.19 -28.074 21.407 1 68.9 ? N SMK 600 C 1 HETATM 5 C C SMK . . . I 2 20.895 -27.536 19.717 1 30.04 ? C SMK 600 C 1 HETATM 6 O O SMK . . . I 2 20.28 -27.234 18.692 1 117.83 ? O SMK 600 C 1 HETATM 7 N NAY SMK . . . I 2 22.057 -27.003 20.091 1 46.36 ? NAY SMK 600 C 1 HETATM 8 C CBI SMK . . . I 2 22.725 -25.993 19.273 1 57.26 ? CBI SMK 600 C 1 HETATM 9 C CBB SMK . . . I 2 24.043 -26.527 18.729 1 42.54 ? CBB SMK 600 C 1 HETATM 10 O OAF SMK . . . I 2 24.452 -27.628 19.108 1 57.5 ? OAF SMK 600 C 1 HETATM 11 N NBK SMK . . . I 2 24.725 -25.878 17.79 1 46.39 ? NBK SMK 600 C 1 HETATM 12 C CBF SMK . . . I 2 22.841 -24.653 19.988 1 50.39 ? CBF SMK 600 C 1 HETATM 13 C CAS SMK . . . I 2 23.774 -24.677 21.181 1 61.93 ? CAS SMK 600 C 1 HETATM 14 C CAQ SMK . . . I 2 22.987 -24.979 22.46 1 94.57 ? CAQ SMK 600 C 1 HETATM 15 N NAB SMK . . . I 2 21.547 -24.932 22.176 1 35.63 ? NAB SMK 600 C 1 HETATM 16 C CAT SMK . . . I 2 23.054 -23.457 19.054 1 49.19 ? CAT SMK 600 C 1 HETATM 17 C CAU SMK . . . I 2 24.384 -23.51 18.304 1 25.67 ? CAU SMK 600 C 1 HETATM 18 C CBG SMK . . . I 2 24.396 -24.56 17.191 1 31.46 ? CBG SMK 600 C 1 HETATM 19 C CAV SMK . . . I 2 25.583 -24.249 16.261 1 45.84 ? CAV SMK 600 C 1 HETATM 20 C CAW SMK . . . I 2 26.11 -25.64 15.901 1 35.63 ? CAW SMK 600 C 1 HETATM 21 C CBJ SMK . . . I 2 25.979 -26.412 17.223 1 23.38 ? CBJ SMK 600 C 1 HETATM 22 C CBA SMK . . . I 2 27.203 -26.143 18.132 1 39.59 ? CBA SMK 600 C 1 HETATM 23 O OAE SMK . . . I 2 27.166 -25.317 19.05 1 38.87 ? OAE SMK 600 C 1 HETATM 24 N NAX SMK . . . I 2 28.276 -26.881 17.835 1 47.59 ? NAX SMK 600 C 1 HETATM 25 C CBH SMK . . . I 2 29.552 -26.781 18.569 1 38.84 ? CBH SMK 600 C 1 HETATM 26 C CBC SMK . . . I 2 30.445 -25.758 17.85 1 69.1 ? CBC SMK 600 C 1 HETATM 27 C CAM SMK . . . I 2 30.844 -24.602 18.53 1 35.23 ? CAM SMK 600 C 1 HETATM 28 C CAI SMK . . . I 2 31.586 -23.618 17.868 1 71.73 ? CAI SMK 600 C 1 HETATM 29 C CAG SMK . . . I 2 31.911 -23.771 16.516 1 93.13 ? CAG SMK 600 C 1 HETATM 30 C CAJ SMK . . . I 2 31.481 -24.908 15.828 1 71.1 ? CAJ SMK 600 C 1 HETATM 31 C CAN SMK . . . I 2 30.739 -25.889 16.488 1 62.65 ? CAN SMK 600 C 1 HETATM 32 C CBD SMK . . . I 2 30.155 -28.18 18.818 1 46.94 ? CBD SMK 600 C 1 HETATM 33 C CAO SMK . . . I 2 29.32 -29.197 19.313 1 30.18 ? CAO SMK 600 C 1 HETATM 34 C CAK SMK . . . I 2 29.825 -30.481 19.558 1 56.82 ? CAK SMK 600 C 1 HETATM 35 C CAH SMK . . . I 2 31.181 -30.752 19.352 1 17.48 ? CAH SMK 600 C 1 HETATM 36 C CAL SMK . . . I 2 32.015 -29.737 18.856 1 35.38 ? CAL SMK 600 C 1 HETATM 37 C CAP SMK . . . I 2 31.507 -28.458 18.587 1 23.69 ? CAP SMK 600 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 37 #