data_3MW6 # _model_server_result.job_id XIDzizk1b0aFQloUpO-zdA _model_server_result.datetime_utc '2025-02-22 16:55:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":142}' # _entry.id 3MW6 # _exptl.entry_id 3MW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.84 _cell.angle_gamma 90 _cell.entry_id 3MW6 _cell.length_a 126.479 _cell.length_b 76.527 _cell.length_c 122.715 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,H,I 1 1 C,D,G,J,K 2 1 D,K 3 1 E,L 3 2 F,M 3 3 E,F,L,M 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -126.479 0 0 3 'crystal symmetry operation' 4_445 -x-1/2,y-1/2,-z -1 0 0 0 1 0 0 0 -1 -63.2395 -38.2635 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 20 A THR 17 1_555 A N MSE 21 A MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 21 A MSE 18 1_555 A N SER 22 A SER 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C GLU 28 A GLU 25 1_555 A N MSE 29 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 29 A MSE 26 1_555 A N ILE 30 A ILE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 B C GLU 28 B GLU 25 1_555 B N MSE 29 B MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C MSE 29 B MSE 26 1_555 B N ILE 30 B ILE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 C C THR 20 C THR 17 1_555 C N MSE 21 C MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 C C MSE 21 C MSE 18 1_555 C N SER 22 C SER 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 C C GLU 28 C GLU 25 1_555 C N MSE 29 C MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 C C MSE 29 C MSE 26 1_555 C N ILE 30 C ILE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 D C ALA 3 D ALA 0 1_555 D N MSE 4 D MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 D C MSE 4 D MSE 1 1_555 D N THR 5 D THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 D C THR 20 D THR 17 1_555 D N MSE 21 D MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 D C MSE 21 D MSE 18 1_555 D N SER 22 D SER 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 D C GLU 28 D GLU 25 1_555 D N MSE 29 D MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 D C MSE 29 D MSE 26 1_555 D N ILE 30 D ILE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 E C ALA 3 E ALA 0 1_555 E N MSE 4 E MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 E C MSE 4 E MSE 1 1_555 E N THR 5 E THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 E C THR 20 E THR 17 1_555 E N MSE 21 E MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 E C MSE 21 E MSE 18 1_555 E N SER 22 E SER 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 E C GLU 28 E GLU 25 1_555 E N MSE 29 E MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 E C MSE 29 E MSE 26 1_555 E N ILE 30 E ILE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale23 F C MSE 4 F MSE 1 1_555 F N THR 5 F THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 F C THR 20 F THR 17 1_555 F N MSE 21 F MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale25 F C MSE 21 F MSE 18 1_555 F N SER 22 F SER 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale26 F C GLU 28 F GLU 25 1_555 F N MSE 29 F MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale27 F C MSE 29 F MSE 26 1_555 F N ILE 30 F ILE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3MW6 _atom_sites.fract_transf_matrix[1][1] 0.007906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL C 1 142 1 GOL GOL . H 3 HOH A 1 142 4 HOH HOH . H 3 HOH A 2 143 12 HOH HOH . H 3 HOH A 3 144 13 HOH HOH . H 3 HOH A 4 145 15 HOH HOH . H 3 HOH A 5 146 18 HOH HOH . H 3 HOH A 6 147 22 HOH HOH . H 3 HOH A 7 148 148 HOH HOH . H 3 HOH A 8 149 25 HOH HOH . H 3 HOH A 9 150 26 HOH HOH . H 3 HOH A 10 151 37 HOH HOH . H 3 HOH A 11 152 152 HOH HOH . H 3 HOH A 12 153 38 HOH HOH . H 3 HOH A 13 154 47 HOH HOH . H 3 HOH A 14 155 55 HOH HOH . H 3 HOH A 15 156 56 HOH HOH . H 3 HOH A 16 157 157 HOH HOH . H 3 HOH A 17 158 58 HOH HOH . H 3 HOH A 18 159 66 HOH HOH . H 3 HOH A 19 160 160 HOH HOH . H 3 HOH A 20 161 69 HOH HOH . H 3 HOH A 21 162 70 HOH HOH . H 3 HOH A 22 163 76 HOH HOH . H 3 HOH A 23 164 79 HOH HOH . H 3 HOH A 24 165 98 HOH HOH . H 3 HOH A 25 166 108 HOH HOH . H 3 HOH A 26 167 167 HOH HOH . H 3 HOH A 27 168 168 HOH HOH . H 3 HOH A 28 169 112 HOH HOH . H 3 HOH A 29 170 121 HOH HOH . H 3 HOH A 30 171 122 HOH HOH . H 3 HOH A 31 172 124 HOH HOH . H 3 HOH A 32 173 129 HOH HOH . H 3 HOH A 33 174 139 HOH HOH . I 3 HOH B 1 142 35 HOH HOH . I 3 HOH B 2 143 44 HOH HOH . I 3 HOH B 3 144 46 HOH HOH . I 3 HOH B 4 145 53 HOH HOH . I 3 HOH B 5 146 63 HOH HOH . I 3 HOH B 6 147 147 HOH HOH . I 3 HOH B 7 148 75 HOH HOH . I 3 HOH B 8 149 81 HOH HOH . I 3 HOH B 9 150 89 HOH HOH . I 3 HOH B 10 151 136 HOH HOH . I 3 HOH B 11 152 140 HOH HOH . J 3 HOH C 1 143 7 HOH HOH . J 3 HOH C 2 144 16 HOH HOH . J 3 HOH C 3 145 21 HOH HOH . J 3 HOH C 4 146 30 HOH HOH . J 3 HOH C 5 147 36 HOH HOH . J 3 HOH C 6 148 41 HOH HOH . J 3 HOH C 7 149 48 HOH HOH . J 3 HOH C 8 150 50 HOH HOH . J 3 HOH C 9 151 64 HOH HOH . J 3 HOH C 10 152 80 HOH HOH . J 3 HOH C 11 153 82 HOH HOH . J 3 HOH C 12 154 154 HOH HOH . J 3 HOH C 13 155 84 HOH HOH . J 3 HOH C 14 156 99 HOH HOH . J 3 HOH C 15 157 101 HOH HOH . J 3 HOH C 16 158 106 HOH HOH . J 3 HOH C 17 159 110 HOH HOH . J 3 HOH C 18 160 116 HOH HOH . J 3 HOH C 19 161 118 HOH HOH . J 3 HOH C 20 162 128 HOH HOH . J 3 HOH C 21 163 163 HOH HOH . J 3 HOH C 22 164 164 HOH HOH . J 3 HOH C 23 165 165 HOH HOH . J 3 HOH C 24 166 166 HOH HOH . J 3 HOH C 25 167 130 HOH HOH . J 3 HOH C 26 168 132 HOH HOH . J 3 HOH C 27 169 134 HOH HOH . K 3 HOH D 1 142 142 HOH HOH . K 3 HOH D 2 143 143 HOH HOH . K 3 HOH D 3 144 6 HOH HOH . K 3 HOH D 4 145 10 HOH HOH . K 3 HOH D 5 146 17 HOH HOH . K 3 HOH D 6 147 31 HOH HOH . K 3 HOH D 7 148 33 HOH HOH . K 3 HOH D 8 149 34 HOH HOH . K 3 HOH D 9 150 150 HOH HOH . K 3 HOH D 10 151 42 HOH HOH . K 3 HOH D 11 152 45 HOH HOH . K 3 HOH D 12 153 49 HOH HOH . K 3 HOH D 13 154 52 HOH HOH . K 3 HOH D 14 155 60 HOH HOH . K 3 HOH D 15 156 65 HOH HOH . K 3 HOH D 16 157 94 HOH HOH . K 3 HOH D 17 158 102 HOH HOH . K 3 HOH D 18 159 103 HOH HOH . K 3 HOH D 19 160 105 HOH HOH . K 3 HOH D 20 161 123 HOH HOH . K 3 HOH D 21 162 162 HOH HOH . K 3 HOH D 22 163 126 HOH HOH . K 3 HOH D 23 164 127 HOH HOH . K 3 HOH D 24 165 131 HOH HOH . K 3 HOH D 25 166 133 HOH HOH . K 3 HOH D 26 167 135 HOH HOH . K 3 HOH D 27 168 137 HOH HOH . K 3 HOH D 28 169 169 HOH HOH . K 3 HOH D 29 170 170 HOH HOH . L 3 HOH E 1 142 1 HOH HOH . L 3 HOH E 2 143 9 HOH HOH . L 3 HOH E 3 144 11 HOH HOH . L 3 HOH E 4 145 14 HOH HOH . L 3 HOH E 5 146 146 HOH HOH . L 3 HOH E 6 147 19 HOH HOH . L 3 HOH E 7 148 27 HOH HOH . L 3 HOH E 8 149 32 HOH HOH . L 3 HOH E 9 150 57 HOH HOH . L 3 HOH E 10 151 151 HOH HOH . L 3 HOH E 11 152 68 HOH HOH . L 3 HOH E 12 153 72 HOH HOH . L 3 HOH E 13 154 73 HOH HOH . L 3 HOH E 14 155 85 HOH HOH . L 3 HOH E 15 156 91 HOH HOH . L 3 HOH E 16 157 93 HOH HOH . L 3 HOH E 17 158 95 HOH HOH . L 3 HOH E 18 159 97 HOH HOH . L 3 HOH E 19 160 100 HOH HOH . L 3 HOH E 20 161 107 HOH HOH . L 3 HOH E 21 162 111 HOH HOH . L 3 HOH E 22 163 114 HOH HOH . L 3 HOH E 23 164 115 HOH HOH . L 3 HOH E 24 165 117 HOH HOH . L 3 HOH E 25 166 119 HOH HOH . L 3 HOH E 26 167 125 HOH HOH . M 3 HOH F 1 142 2 HOH HOH . M 3 HOH F 2 143 3 HOH HOH . M 3 HOH F 3 144 144 HOH HOH . M 3 HOH F 4 145 145 HOH HOH . M 3 HOH F 5 146 5 HOH HOH . M 3 HOH F 6 147 8 HOH HOH . M 3 HOH F 7 148 20 HOH HOH . M 3 HOH F 8 149 149 HOH HOH . M 3 HOH F 9 150 23 HOH HOH . M 3 HOH F 10 151 24 HOH HOH . M 3 HOH F 11 152 28 HOH HOH . M 3 HOH F 12 153 153 HOH HOH . M 3 HOH F 13 154 29 HOH HOH . M 3 HOH F 14 155 155 HOH HOH . M 3 HOH F 15 156 156 HOH HOH . M 3 HOH F 16 157 39 HOH HOH . M 3 HOH F 17 158 158 HOH HOH . M 3 HOH F 18 159 159 HOH HOH . M 3 HOH F 19 160 40 HOH HOH . M 3 HOH F 20 161 161 HOH HOH . M 3 HOH F 21 162 43 HOH HOH . M 3 HOH F 22 163 51 HOH HOH . M 3 HOH F 23 164 54 HOH HOH . M 3 HOH F 24 165 59 HOH HOH . M 3 HOH F 25 166 61 HOH HOH . M 3 HOH F 26 167 62 HOH HOH . M 3 HOH F 27 168 67 HOH HOH . M 3 HOH F 28 169 71 HOH HOH . M 3 HOH F 29 170 74 HOH HOH . M 3 HOH F 30 171 77 HOH HOH . M 3 HOH F 31 172 78 HOH HOH . M 3 HOH F 32 173 83 HOH HOH . M 3 HOH F 33 174 86 HOH HOH . M 3 HOH F 34 175 87 HOH HOH . M 3 HOH F 35 176 88 HOH HOH . M 3 HOH F 36 177 90 HOH HOH . M 3 HOH F 37 178 92 HOH HOH . M 3 HOH F 38 179 96 HOH HOH . M 3 HOH F 39 180 104 HOH HOH . M 3 HOH F 40 181 109 HOH HOH . M 3 HOH F 41 182 113 HOH HOH . M 3 HOH F 42 183 120 HOH HOH . M 3 HOH F 43 184 138 HOH HOH . M 3 HOH F 44 185 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 -49.091 -16.288 -52.587 1 97.42 ? C1 GOL 142 C 1 HETATM 2 O O1 GOL . . . G 2 -49.183 -16.263 -51.172 1 97.04 ? O1 GOL 142 C 1 HETATM 3 C C2 GOL . . . G 2 -50.504 -16.178 -53.144 1 98.81 ? C2 GOL 142 C 1 HETATM 4 O O2 GOL . . . G 2 -50.953 -14.855 -52.993 1 97.44 ? O2 GOL 142 C 1 HETATM 5 C C3 GOL . . . G 2 -50.59 -16.567 -54.615 1 99.4 ? C3 GOL 142 C 1 HETATM 6 O O3 GOL . . . G 2 -51.941 -16.872 -54.919 1 98.02 ? O3 GOL 142 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #