data_3MW7 # _model_server_result.job_id gPttpASgfVQmONxNdtL-2w _model_server_result.datetime_utc '2024-11-27 10:57:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":292}' # _entry.id 3MW7 # _exptl.entry_id 3MW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.172 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-FLUORO-URIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.64 _cell.angle_gamma 90 _cell.entry_id 3MW7 _cell.length_a 70.29 _cell.length_b 61.742 _cell.length_c 71.212 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H12 F N2 O9 P' _chem_comp.formula_weight 342.172 _chem_comp.id 5FU _chem_comp.mon_nstd_flag n _chem_comp.name "5-FLUORO-URIDINE-5'-MONOPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F5 C5 5FU sing 1 n n C5 C6 5FU doub 2 n n C5 C4 5FU sing 3 n n C4 O4 5FU doub 4 n n C4 N3 5FU sing 5 n n N3 H3 5FU sing 6 n n N3 C2 5FU sing 7 n n C2 N1 5FU sing 8 n n C2 O2 5FU doub 9 n n C6 N1 5FU sing 10 n n C6 H6 5FU sing 11 n n N1 C1' 5FU sing 12 n n C1' C2' 5FU sing 13 n n C1' H1' 5FU sing 14 n n C1' O4' 5FU sing 15 n n O4' C4' 5FU sing 16 n n C2' O2' 5FU sing 17 n n C2' H2' 5FU sing 18 n n C2' C3' 5FU sing 19 n n O2' "HO'2" 5FU sing 20 n n C3' C4' 5FU sing 21 n n C3' H3' 5FU sing 22 n n C3' O3' 5FU sing 23 n n O3' H3T 5FU sing 24 n n C4' H4' 5FU sing 25 n n C4' C5' 5FU sing 26 n n C5' "H5'1" 5FU sing 27 n n C5' "H5'2" 5FU sing 28 n n C5' O5' 5FU sing 29 n n O5' P 5FU sing 30 n n P O1P 5FU doub 31 n n P O2P 5FU sing 32 n n P O3P 5FU sing 33 n n O2P HOP2 5FU sing 34 n n O3P HOP3 5FU sing 35 n n # _atom_sites.entry_id 3MW7 _atom_sites.fract_transf_matrix[1][1] 0.014227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005643 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5FU A 1 292 1 5FU 5FU . D 2 5FU B 1 292 1 5FU 5FU . E 3 HOH A 1 293 2 HOH HOH . E 3 HOH A 2 294 3 HOH HOH . E 3 HOH A 3 295 6 HOH HOH . E 3 HOH A 4 296 7 HOH HOH . E 3 HOH A 5 297 9 HOH HOH . E 3 HOH A 6 298 11 HOH HOH . E 3 HOH A 7 299 13 HOH HOH . E 3 HOH A 8 300 18 HOH HOH . E 3 HOH A 9 301 19 HOH HOH . E 3 HOH A 10 302 20 HOH HOH . E 3 HOH A 11 303 21 HOH HOH . E 3 HOH A 12 304 28 HOH HOH . E 3 HOH A 13 305 32 HOH HOH . E 3 HOH A 14 306 33 HOH HOH . E 3 HOH A 15 307 34 HOH HOH . E 3 HOH A 16 308 36 HOH HOH . F 3 HOH B 1 293 1 HOH HOH . F 3 HOH B 2 294 4 HOH HOH . F 3 HOH B 3 295 5 HOH HOH . F 3 HOH B 4 296 8 HOH HOH . F 3 HOH B 5 297 10 HOH HOH . F 3 HOH B 6 298 12 HOH HOH . F 3 HOH B 7 299 15 HOH HOH . F 3 HOH B 8 300 16 HOH HOH . F 3 HOH B 9 301 17 HOH HOH . F 3 HOH B 10 302 22 HOH HOH . F 3 HOH B 11 303 23 HOH HOH . F 3 HOH B 12 304 24 HOH HOH . F 3 HOH B 13 305 25 HOH HOH . F 3 HOH B 14 306 26 HOH HOH . F 3 HOH B 15 307 27 HOH HOH . F 3 HOH B 16 308 29 HOH HOH . F 3 HOH B 17 309 30 HOH HOH . F 3 HOH B 18 310 31 HOH HOH . F 3 HOH B 19 311 35 HOH HOH . F 3 HOH B 20 312 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F5 5FU . . . C 2 16.807 5.524 8.654 1 37.6 ? F5 5FU 292 A 1 HETATM 2 C C5 5FU . . . C 2 16.875 6.735 8.064 1 36.34 ? C5 5FU 292 A 1 HETATM 3 C C4 5FU . . . C 2 17.524 7.781 8.695 1 34.74 ? C4 5FU 292 A 1 HETATM 4 O O4 5FU . . . C 2 18.048 7.583 9.807 1 36.69 ? O4 5FU 292 A 1 HETATM 5 N N3 5FU . . . C 2 17.609 8.991 8.087 1 35.22 ? N3 5FU 292 A 1 HETATM 6 C C2 5FU . . . C 2 17.019 9.159 6.869 1 35.71 ? C2 5FU 292 A 1 HETATM 7 O O2 5FU . . . C 2 17.075 10.257 6.289 1 35.67 ? O2 5FU 292 A 1 HETATM 8 C C6 5FU . . . C 2 16.307 6.942 6.804 1 36.37 ? C6 5FU 292 A 1 HETATM 9 N N1 5FU . . . C 2 16.384 8.161 6.241 1 35.93 ? N1 5FU 292 A 1 HETATM 10 C C1' 5FU . . . C 2 15.802 8.36 4.903 1 35.45 ? C1' 5FU 292 A 1 HETATM 11 O O4' 5FU . . . C 2 16.853 8.639 3.977 1 34.41 ? O4' 5FU 292 A 1 HETATM 12 C C2' 5FU . . . C 2 14.821 9.511 4.805 1 32.32 ? C2' 5FU 292 A 1 HETATM 13 O O2' 5FU . . . C 2 13.517 8.961 4.9 1 29.48 ? O2' 5FU 292 A 1 HETATM 14 C C3' 5FU . . . C 2 15.112 10.12 3.447 1 32.98 ? C3' 5FU 292 A 1 HETATM 15 O O3' 5FU . . . C 2 14.248 9.565 2.445 1 34.59 ? O3' 5FU 292 A 1 HETATM 16 C C4' 5FU . . . C 2 16.523 9.705 3.097 1 31.96 ? C4' 5FU 292 A 1 HETATM 17 C C5' 5FU . . . C 2 17.55 10.819 3.252 1 32.31 ? C5' 5FU 292 A 1 HETATM 18 O O5' 5FU . . . C 2 17.127 11.979 2.546 1 31.53 ? O5' 5FU 292 A 1 HETATM 19 P P 5FU . . . C 2 18.022 13.312 2.427 1 30.42 ? P 5FU 292 A 1 HETATM 20 O O1P 5FU . . . C 2 17.209 14.135 1.48 1 31.91 ? O1P 5FU 292 A 1 HETATM 21 O O2P 5FU . . . C 2 19.338 12.841 1.848 1 34.08 ? O2P 5FU 292 A 1 HETATM 22 O O3P 5FU . . . C 2 18.129 13.805 3.857 1 30.79 ? O3P 5FU 292 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #