data_3MWU # _model_server_result.job_id 3EXHFaDKpeuadUd4SiST3g _model_server_result.datetime_utc '2025-01-11 03:09:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":561}' # _entry.id 3MWU # _exptl.entry_id 3MWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.466 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(naphthalen-1-ylmethyl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.79 _cell.angle_gamma 90 _cell.entry_id 3MWU _cell.length_a 60.02 _cell.length_b 55.97 _cell.length_c 82.21 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 341 A ASP 393 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A OD1 ASN 343 A ASN 395 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 A OD1 ASP 345 A ASP 397 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc4 A O MET 347 A MET 399 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc5 A OE1 GLU 352 A GLU 404 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc6 A OE2 GLU 352 A GLU 404 1_555 B CA CA . A CA 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc7 A OD1 ASP 391 A ASP 443 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 A OD1 ASP 393 A ASP 445 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc9 A OG SER 395 A SER 447 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc10 A O SER 397 A SER 449 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 A OE1 GLU 399 A GLU 451 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc12 A OE1 GLU 402 A GLU 454 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc13 A OE2 GLU 402 A GLU 454 1_555 C CA CA . A CA 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc14 A OD2 ASP 427 A ASP 479 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc15 A OD1 ASP 429 A ASP 481 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc16 A OG SER 431 A SER 483 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc17 A O LYS 433 A LYS 485 1_555 D CA CA . A CA 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc18 A OD1 ASP 463 A ASP 515 1_555 E CA CA . A CA 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc19 A OD1 ASP 467 A ASP 519 1_555 E CA CA . A CA 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc20 A O GLU 469 A GLU 521 1_555 E CA CA . A CA 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc21 A OE2 GLU 474 A GLU 526 1_555 E CA CA . A CA 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc22 B CA CA . A CA 551 1_555 G O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'C22 H24 N6' _chem_comp.formula_weight 372.466 _chem_comp.id BK3 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(naphthalen-1-ylmethyl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 BK3 doub 70 n y N1 C6 BK3 sing 71 n y N3 C2 BK3 sing 72 n y C2 H2 BK3 sing 73 n n N3 C4 BK3 doub 74 n y NBB C4 BK3 sing 75 n y C4 C5 BK3 sing 76 n y CAV C5 BK3 sing 77 n y C5 C6 BK3 doub 78 n y C6 NAA BK3 sing 79 n n NAA HNAA BK3 sing 80 n n NAA HNAB BK3 sing 81 n n CAO NBB BK3 sing 82 n n NBB NAR BK3 sing 83 n y NAR CAV BK3 doub 84 n y CAJ NAS BK3 sing 85 n n NAS CAK BK3 sing 86 n n NAS HNAS BK3 sing 87 n n CAC CAB BK3 doub 88 n y CAG CAB BK3 sing 89 n y CAB HAB BK3 sing 90 n n CAI CAC BK3 sing 91 n y CAC HAC BK3 sing 92 n n CAE CAD BK3 sing 93 n y CAD CAH BK3 doub 94 n y CAD HAD BK3 sing 95 n n CAE CAU BK3 doub 96 n y CAE HAE BK3 sing 97 n n CAW CAG BK3 doub 98 n y CAG HAG BK3 sing 99 n n CAH CAW BK3 sing 100 n y CAH HAH BK3 sing 101 n n CAX CAI BK3 doub 102 n y CAI HAI BK3 sing 103 n n CAJ CAL BK3 sing 104 n n CAJ HAJ BK3 sing 105 n n CAJ HAJA BK3 sing 106 n n CAK CAM BK3 sing 107 n n CAK HAK BK3 sing 108 n n CAK HAKA BK3 sing 109 n n CAL CBA BK3 sing 110 n n CAL HAL BK3 sing 111 n n CAL HALA BK3 sing 112 n n CBA CAM BK3 sing 113 n n CAM HAM BK3 sing 114 n n CAM HAMA BK3 sing 115 n n CAV CAN BK3 sing 116 n n CAN CAU BK3 sing 117 n n CAN HAN BK3 sing 118 n n CAN HANA BK3 sing 119 n n CBA CAO BK3 sing 120 n n CAO HAO BK3 sing 121 n n CAO HAOA BK3 sing 122 n n CAU CAX BK3 sing 123 n y CAX CAW BK3 sing 124 n y CBA HBA BK3 sing 125 n n # _atom_sites.entry_id 3MWU _atom_sites.fract_transf_matrix[1][1] 0.016661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004399 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 551 551 CA CA . C 2 CA A 1 552 552 CA CA . D 2 CA A 1 553 553 CA CA . E 2 CA A 1 554 554 CA CA . F 3 BK3 A 1 561 561 BK3 BK3 . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . G 4 HOH A 9 609 609 HOH HOH . G 4 HOH A 10 610 610 HOH HOH . G 4 HOH A 11 611 611 HOH HOH . G 4 HOH A 12 612 612 HOH HOH . G 4 HOH A 13 613 613 HOH HOH . G 4 HOH A 14 614 614 HOH HOH . G 4 HOH A 15 615 615 HOH HOH . G 4 HOH A 16 616 616 HOH HOH . G 4 HOH A 17 617 617 HOH HOH . G 4 HOH A 18 618 618 HOH HOH . G 4 HOH A 19 619 619 HOH HOH . G 4 HOH A 20 620 620 HOH HOH . G 4 HOH A 21 621 621 HOH HOH . G 4 HOH A 22 622 622 HOH HOH . G 4 HOH A 23 623 623 HOH HOH . G 4 HOH A 24 624 624 HOH HOH . G 4 HOH A 25 625 625 HOH HOH . G 4 HOH A 26 626 626 HOH HOH . G 4 HOH A 27 627 627 HOH HOH . G 4 HOH A 28 628 628 HOH HOH . G 4 HOH A 29 629 629 HOH HOH . G 4 HOH A 30 630 630 HOH HOH . G 4 HOH A 31 631 631 HOH HOH . G 4 HOH A 32 632 632 HOH HOH . G 4 HOH A 33 633 633 HOH HOH . G 4 HOH A 34 634 634 HOH HOH . G 4 HOH A 35 635 635 HOH HOH . G 4 HOH A 36 636 636 HOH HOH . G 4 HOH A 37 637 637 HOH HOH . G 4 HOH A 38 638 638 HOH HOH . G 4 HOH A 39 639 639 HOH HOH . G 4 HOH A 40 640 640 HOH HOH . G 4 HOH A 41 641 641 HOH HOH . G 4 HOH A 42 642 642 HOH HOH . G 4 HOH A 43 643 643 HOH HOH . G 4 HOH A 44 644 644 HOH HOH . G 4 HOH A 45 645 645 HOH HOH . G 4 HOH A 46 646 646 HOH HOH . G 4 HOH A 47 647 647 HOH HOH . G 4 HOH A 48 648 648 HOH HOH . G 4 HOH A 49 649 649 HOH HOH . G 4 HOH A 50 650 650 HOH HOH . G 4 HOH A 51 651 651 HOH HOH . G 4 HOH A 52 652 652 HOH HOH . G 4 HOH A 53 654 654 HOH HOH . G 4 HOH A 54 655 655 HOH HOH . G 4 HOH A 55 656 656 HOH HOH . G 4 HOH A 56 657 657 HOH HOH . G 4 HOH A 57 658 658 HOH HOH . G 4 HOH A 58 659 659 HOH HOH . G 4 HOH A 59 660 660 HOH HOH . G 4 HOH A 60 661 661 HOH HOH . G 4 HOH A 61 662 662 HOH HOH . G 4 HOH A 62 663 663 HOH HOH . G 4 HOH A 63 664 664 HOH HOH . G 4 HOH A 64 665 665 HOH HOH . G 4 HOH A 65 666 666 HOH HOH . G 4 HOH A 66 667 667 HOH HOH . G 4 HOH A 67 668 668 HOH HOH . G 4 HOH A 68 669 669 HOH HOH . G 4 HOH A 69 670 670 HOH HOH . G 4 HOH A 70 671 671 HOH HOH . G 4 HOH A 71 672 672 HOH HOH . G 4 HOH A 72 673 673 HOH HOH . G 4 HOH A 73 674 674 HOH HOH . G 4 HOH A 74 675 675 HOH HOH . G 4 HOH A 75 676 676 HOH HOH . G 4 HOH A 76 677 677 HOH HOH . G 4 HOH A 77 678 678 HOH HOH . G 4 HOH A 78 679 679 HOH HOH . G 4 HOH A 79 680 680 HOH HOH . G 4 HOH A 80 681 681 HOH HOH . G 4 HOH A 81 682 682 HOH HOH . G 4 HOH A 82 683 683 HOH HOH . G 4 HOH A 83 684 684 HOH HOH . G 4 HOH A 84 685 685 HOH HOH . G 4 HOH A 85 686 686 HOH HOH . G 4 HOH A 86 687 687 HOH HOH . G 4 HOH A 87 688 688 HOH HOH . G 4 HOH A 88 689 689 HOH HOH . G 4 HOH A 89 690 690 HOH HOH . G 4 HOH A 90 691 691 HOH HOH . G 4 HOH A 91 692 692 HOH HOH . G 4 HOH A 92 693 693 HOH HOH . G 4 HOH A 93 694 694 HOH HOH . G 4 HOH A 94 695 695 HOH HOH . G 4 HOH A 95 696 696 HOH HOH . G 4 HOH A 96 697 697 HOH HOH . G 4 HOH A 97 698 698 HOH HOH . G 4 HOH A 98 699 699 HOH HOH . G 4 HOH A 99 700 700 HOH HOH . G 4 HOH A 100 701 701 HOH HOH . G 4 HOH A 101 702 702 HOH HOH . G 4 HOH A 102 703 703 HOH HOH . G 4 HOH A 103 704 704 HOH HOH . G 4 HOH A 104 705 705 HOH HOH . G 4 HOH A 105 706 706 HOH HOH . G 4 HOH A 106 707 707 HOH HOH . G 4 HOH A 107 708 708 HOH HOH . G 4 HOH A 108 709 709 HOH HOH . G 4 HOH A 109 710 710 HOH HOH . G 4 HOH A 110 711 711 HOH HOH . G 4 HOH A 111 712 712 HOH HOH . G 4 HOH A 112 713 713 HOH HOH . G 4 HOH A 113 714 714 HOH HOH . G 4 HOH A 114 715 715 HOH HOH . G 4 HOH A 115 716 716 HOH HOH . G 4 HOH A 116 717 717 HOH HOH . G 4 HOH A 117 718 718 HOH HOH . G 4 HOH A 118 719 719 HOH HOH . G 4 HOH A 119 720 720 HOH HOH . G 4 HOH A 120 721 721 HOH HOH . G 4 HOH A 121 722 722 HOH HOH . G 4 HOH A 122 723 723 HOH HOH . G 4 HOH A 123 724 724 HOH HOH . G 4 HOH A 124 725 725 HOH HOH . G 4 HOH A 125 726 726 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BK3 . . . F 3 27.502 6.525 6.636 1 34.15 ? N1 BK3 561 A 1 HETATM 2 C C2 BK3 . . . F 3 27.58 5.902 5.453 1 35.58 ? C2 BK3 561 A 1 HETATM 3 N N3 BK3 . . . F 3 26.997 6.36 4.37 1 37.98 ? N3 BK3 561 A 1 HETATM 4 C C4 BK3 . . . F 3 26.291 7.513 4.415 1 35.15 ? C4 BK3 561 A 1 HETATM 5 C C5 BK3 . . . F 3 26.175 8.218 5.598 1 35.9 ? C5 BK3 561 A 1 HETATM 6 C C6 BK3 . . . F 3 26.803 7.677 6.741 1 40.85 ? C6 BK3 561 A 1 HETATM 7 N NAA BK3 . . . F 3 26.76 8.254 7.937 1 36.17 ? NAA BK3 561 A 1 HETATM 8 N NBB BK3 . . . F 3 25.607 8.189 3.509 1 37.37 ? NBB BK3 561 A 1 HETATM 9 N NAR BK3 . . . F 3 25.083 9.23 3.967 1 36.11 ? NAR BK3 561 A 1 HETATM 10 N NAS BK3 . . . F 3 21.676 6.238 0.753 1 51.56 ? NAS BK3 561 A 1 HETATM 11 C CAB BK3 . . . F 3 24.569 15.397 7.919 1 39.78 ? CAB BK3 561 A 1 HETATM 12 C CAC BK3 . . . F 3 23.632 14.416 7.544 1 42.37 ? CAC BK3 561 A 1 HETATM 13 C CAD BK3 . . . F 3 28.16 12.308 6.832 1 33.61 ? CAD BK3 561 A 1 HETATM 14 C CAE BK3 . . . F 3 27.225 11.338 6.442 1 38.25 ? CAE BK3 561 A 1 HETATM 15 C CAG BK3 . . . F 3 25.929 15.088 7.829 1 43.33 ? CAG BK3 561 A 1 HETATM 16 C CAH BK3 . . . F 3 27.715 13.545 7.296 1 37.08 ? CAH BK3 561 A 1 HETATM 17 C CAI BK3 . . . F 3 24.077 13.171 7.096 1 41.73 ? CAI BK3 561 A 1 HETATM 18 C CAJ BK3 . . . F 3 22.873 5.64 0.173 1 47.37 ? CAJ BK3 561 A 1 HETATM 19 C CAK BK3 . . . F 3 21.812 6.406 2.222 1 52.54 ? CAK BK3 561 A 1 HETATM 20 C CAL BK3 . . . F 3 24.036 6.649 0.369 1 49.62 ? CAL BK3 561 A 1 HETATM 21 C CAM BK3 . . . F 3 23.055 7.252 2.573 1 53.73 ? CAM BK3 561 A 1 HETATM 22 C CAN BK3 . . . F 3 24.857 10.465 6.134 1 40.16 ? CAN BK3 561 A 1 HETATM 23 C CAO BK3 . . . F 3 25.505 7.766 2.116 1 36.74 ? CAO BK3 561 A 1 HETATM 24 C CAU BK3 . . . F 3 25.852 11.585 6.531 1 38.32 ? CAU BK3 561 A 1 HETATM 25 C CAV BK3 . . . F 3 25.37 9.326 5.267 1 35.14 ? CAV BK3 561 A 1 HETATM 26 C CAW BK3 . . . F 3 26.366 13.819 7.387 1 39.13 ? CAW BK3 561 A 1 HETATM 27 C CAX BK3 . . . F 3 25.434 12.849 7.002 1 38.19 ? CAX BK3 561 A 1 HETATM 28 C CBA BK3 . . . F 3 24.335 6.775 1.873 1 44.31 ? CBA BK3 561 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #