data_3MWY # _model_server_result.job_id RBGCSHwbDAlNCeStHncBXA _model_server_result.datetime_utc '2024-11-13 03:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2000}' # _entry.id 3MWY # _exptl.entry_id 3MWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MWY _cell.length_a 94.333 _cell.length_b 94.333 _cell.length_c 450.088 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1 A,B 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 163.389549 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG S1G AGS doub 1 n n PG O2G AGS sing 2 n n PG O3G AGS sing 3 n n PG O3B AGS sing 4 n n PB O1B AGS doub 5 n n PB O2B AGS sing 6 n n PB O3B AGS sing 7 n n PB O3A AGS sing 8 n n PA O1A AGS doub 9 n n PA O2A AGS sing 10 n n PA O3A AGS sing 11 n n PA O5' AGS sing 12 n n O5' C5' AGS sing 13 n n C5' C4' AGS sing 14 n n C4' O4' AGS sing 15 n n C4' C3' AGS sing 16 n n O4' C1' AGS sing 17 n n C3' O3' AGS sing 18 n n C3' C2' AGS sing 19 n n C2' O2' AGS sing 20 n n C2' C1' AGS sing 21 n n C1' N9 AGS sing 22 n n N9 C8 AGS sing 23 n y N9 C4 AGS sing 24 n y C8 N7 AGS doub 25 n y N7 C5 AGS sing 26 n y C5 C6 AGS sing 27 n y C5 C4 AGS doub 28 n y C6 N6 AGS sing 29 n n C6 N1 AGS doub 30 n y N1 C2 AGS sing 31 n y C2 N3 AGS doub 32 n y N3 C4 AGS sing 33 n y O2G HOG2 AGS sing 34 n n O3G H21 AGS sing 35 n n O2B HOB2 AGS sing 36 n n O2A HOA2 AGS sing 37 n n C5' "H5'1" AGS sing 38 n n C5' "H5'2" AGS sing 39 n n C4' H4' AGS sing 40 n n C3' H3' AGS sing 41 n n O3' HO3' AGS sing 42 n n C2' H2' AGS sing 43 n n O2' HO2' AGS sing 44 n n C1' H1' AGS sing 45 n n C8 H8 AGS sing 46 n n N6 HN61 AGS sing 47 n n N6 HN62 AGS sing 48 n n C2 H2 AGS sing 49 n n # _atom_sites.entry_id 3MWY _atom_sites.fract_transf_matrix[1][1] 0.010601 _atom_sites.fract_transf_matrix[1][2] 0.00612 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id AGS _pdbx_nonpoly_scheme.pdb_strand_id W _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2000 _pdbx_nonpoly_scheme.auth_seq_num 2000 _pdbx_nonpoly_scheme.pdb_mon_id AGS _pdbx_nonpoly_scheme.auth_mon_id AGS _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . B 2 23.698 46.669 26.712 1 133.18 ? PG AGS 2000 W 1 HETATM 2 S S1G AGS . . . B 2 22.507 46.51 28.414 1 132.97 ? S1G AGS 2000 W 1 HETATM 3 O O2G AGS . . . B 2 24.11 45.282 26.195 1 128.3 ? O2G AGS 2000 W 1 HETATM 4 O O3G AGS . . . B 2 22.931 47.651 25.817 1 140.17 ? O3G AGS 2000 W 1 HETATM 5 P PB AGS . . . B 2 26.198 46.739 27.964 1 127.26 ? PB AGS 2000 W 1 HETATM 6 O O1B AGS . . . B 2 26.163 47.061 29.454 1 126.89 ? O1B AGS 2000 W 1 HETATM 7 O O2B AGS . . . B 2 26.189 45.324 27.429 1 123.1 ? O2B AGS 2000 W 1 HETATM 8 O O3B AGS . . . B 2 25.011 47.494 27.204 1 132.98 ? O3B AGS 2000 W 1 HETATM 9 P PA AGS . . . B 2 28.521 46.818 26.497 1 126.94 ? PA AGS 2000 W 1 HETATM 10 O O1A AGS . . . B 2 28.943 45.504 27.151 1 121.2 ? O1A AGS 2000 W 1 HETATM 11 O O2A AGS . . . B 2 28.075 46.908 25.043 1 130.1 ? O2A AGS 2000 W 1 HETATM 12 O O3A AGS . . . B 2 27.417 47.562 27.363 1 129.54 ? O3A AGS 2000 W 1 HETATM 13 O O5' AGS . . . B 2 29.662 47.877 26.901 1 129.55 ? O5' AGS 2000 W 1 HETATM 14 C C5' AGS . . . B 2 29.989 49.026 26.113 1 135.21 ? C5' AGS 2000 W 1 HETATM 15 C C4' AGS . . . B 2 31.432 48.772 25.657 1 134.52 ? C4' AGS 2000 W 1 HETATM 16 O O4' AGS . . . B 2 32.262 48.496 26.797 1 131.66 ? O4' AGS 2000 W 1 HETATM 17 C C3' AGS . . . B 2 31.556 47.522 24.764 1 131.14 ? C3' AGS 2000 W 1 HETATM 18 O O3' AGS . . . B 2 32.347 47.821 23.597 1 134.64 ? O3' AGS 2000 W 1 HETATM 19 C C2' AGS . . . B 2 32.247 46.472 25.624 1 125.88 ? C2' AGS 2000 W 1 HETATM 20 O O2' AGS . . . B 2 33.043 45.547 24.879 1 124.24 ? O2' AGS 2000 W 1 HETATM 21 C C1' AGS . . . B 2 33.112 47.393 26.454 1 128.18 ? C1' AGS 2000 W 1 HETATM 22 N N9 AGS . . . B 2 33.637 46.721 27.645 1 124.52 ? N9 AGS 2000 W 1 HETATM 23 C C8 AGS . . . B 2 32.929 46.32 28.71 1 121.71 ? C8 AGS 2000 W 1 HETATM 24 N N7 AGS . . . B 2 33.749 45.755 29.625 1 119.64 ? N7 AGS 2000 W 1 HETATM 25 C C5 AGS . . . B 2 35.008 45.794 29.131 1 121.19 ? C5 AGS 2000 W 1 HETATM 26 C C6 AGS . . . B 2 36.37 45.364 29.566 1 121.24 ? C6 AGS 2000 W 1 HETATM 27 N N6 AGS . . . B 2 36.569 44.756 30.762 1 119.25 ? N6 AGS 2000 W 1 HETATM 28 N N1 AGS . . . B 2 37.42 45.597 28.733 1 124.14 ? N1 AGS 2000 W 1 HETATM 29 C C2 AGS . . . B 2 37.252 46.202 27.539 1 126.86 ? C2 AGS 2000 W 1 HETATM 30 N N3 AGS . . . B 2 36.051 46.618 27.084 1 127.05 ? N3 AGS 2000 W 1 HETATM 31 C C4 AGS . . . B 2 34.92 46.442 27.818 1 124.38 ? C4 AGS 2000 W 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #