data_3MXG
#
_model_server_result.job_id            X90Gj6HFvz9WBsptbraWOg 
_model_server_result.datetime_utc      '2025-04-09 13:12:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mxg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":71}' 
#
_entry.id    3MXG 
#
_exptl.entry_id    3MXG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            D-xylose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.36 
_cell.angle_gamma         90 
_cell.entry_id            3MXG 
_cell.length_a            121.908 
_cell.length_b            69.208 
_cell.length_c            103.013 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MXG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,K,O,U,V,W,X 1 1 
B,C,D,E,F,L,M,N,P,Q,R,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 56 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 56 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf3 C SG CYS 3 C CYS 3 1_555 C SG CYS 56 C CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf4 D SG CYS 3 D CYS 3 1_555 D SG CYS 56 D CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
disulf ? disulf5 E SG CYS 3 E CYS 3 1_555 E SG CYS 56 E CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf6 F SG CYS 3 F CYS 3 1_555 F SG CYS 56 F CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf7 G SG CYS 3 G CYS 3 1_555 G SG CYS 56 G CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf8 H SG CYS 3 H CYS 3 1_555 H SG CYS 56 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf9 I SG CYS 3 I CYS 3 1_555 I SG CYS 56 I CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf10 J SG CYS 3 J CYS 3 1_555 J SG CYS 56 J CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                XLS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-xylose 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'D-XYLOSE (LINEAR FORM)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 XLS sing 355 n n 
C1 O1 XLS doub 356 n n 
C1 H1 XLS sing 357 n n 
C2 C3 XLS sing 358 n n 
C2 O2 XLS sing 359 n n 
C2 H2 XLS sing 360 n n 
C3 C4 XLS sing 361 n n 
C3 O3 XLS sing 362 n n 
C3 H3 XLS sing 363 n n 
C4 C5 XLS sing 364 n n 
C4 O4 XLS sing 365 n n 
C4 H4 XLS sing 366 n n 
C5 O5 XLS sing 367 n n 
C5 H51 XLS sing 368 n n 
C5 H52 XLS sing 369 n n 
O2 HO2 XLS sing 370 n n 
O3 HO3 XLS sing 371 n n 
O4 HO4 XLS sing 372 n n 
O5 HO5 XLS sing 373 n n 
#
_atom_sites.entry_id                     3MXG 
_atom_sites.fract_transf_matrix[1][1]    0.008203 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005608 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014449 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 XLS A 1 71 71 XLS XLS . 
L 2 XLS B 1 71 71 XLS XLS . 
M 2 XLS C 1 71 71 XLS XLS . 
N 2 XLS D 1 71 71 XLS XLS . 
O 3 HOH A 1 72 72 HOH HOH . 
O 3 HOH A 2 73 73 HOH HOH . 
O 3 HOH A 3 74 74 HOH HOH . 
O 3 HOH A 4 75 75 HOH HOH . 
O 3 HOH A 5 76 76 HOH HOH . 
P 3 HOH B 1 72 72 HOH HOH . 
P 3 HOH B 2 73 73 HOH HOH . 
P 3 HOH B 3 74 74 HOH HOH . 
Q 3 HOH C 1 72 72 HOH HOH . 
Q 3 HOH C 2 73 73 HOH HOH . 
Q 3 HOH C 3 74 74 HOH HOH . 
Q 3 HOH C 4 75 75 HOH HOH . 
R 3 HOH D 1 72 72 HOH HOH . 
R 3 HOH D 2 73 73 HOH HOH . 
R 3 HOH D 3 74 74 HOH HOH . 
S 3 HOH E 1 71 71 HOH HOH . 
S 3 HOH E 2 72 72 HOH HOH . 
T 3 HOH F 1 71 71 HOH HOH . 
U 3 HOH G 1 71 71 HOH HOH . 
U 3 HOH G 2 72 72 HOH HOH . 
V 3 HOH H 1 71 71 HOH HOH . 
V 3 HOH H 2 72 72 HOH HOH . 
V 3 HOH H 3 73 73 HOH HOH . 
V 3 HOH H 4 74 74 HOH HOH . 
W 3 HOH I 1 71 71 HOH HOH . 
W 3 HOH I 2 72 72 HOH HOH . 
X 3 HOH J 1 71 71 HOH HOH . 
X 3 HOH J 2 73 73 HOH HOH . 
X 3 HOH J 3 74 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 XLS . . . M 2 8.976 10.502 -13.393 1 60.25 ? C1 XLS 71 C 1 
HETATM 2 C C2 XLS . . . M 2 7.547 10.393 -13.97 1 60.6 ? C2 XLS 71 C 1 
HETATM 3 C C3 XLS . . . M 2 6.437 10.505 -12.899 1 62.77 ? C3 XLS 71 C 1 
HETATM 4 C C4 XLS . . . M 2 4.917 10.632 -13.302 1 65.26 ? C4 XLS 71 C 1 
HETATM 5 C C5 XLS . . . M 2 4.132 9.347 -13.504 1 64.54 ? C5 XLS 71 C 1 
HETATM 6 O O1 XLS . . . M 2 10.013 11.169 -14.166 1 58.72 ? O1 XLS 71 C 1 
HETATM 7 O O2 XLS . . . M 2 7.449 11.439 -14.916 1 53.11 ? O2 XLS 71 C 1 
HETATM 8 O O3 XLS . . . M 2 6.817 11.678 -12.196 1 68.46 ? O3 XLS 71 C 1 
HETATM 9 O O4 XLS . . . M 2 4.058 11.283 -12.329 1 60.96 ? O4 XLS 71 C 1 
HETATM 10 O O5 XLS . . . M 2 2.933 9.639 -12.811 1 63.69 ? O5 XLS 71 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#