data_3MXN # _model_server_result.job_id Si3e_WmPW4oT-4IjUrxNzA _model_server_result.datetime_utc '2024-11-04 20:58:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3MXN # _exptl.entry_id 3MXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MXN _cell.length_a 42.096 _cell.length_b 42.223 _cell.length_c 152.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 3MXN _atom_sites.fract_transf_matrix[1][1] 0.023755 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BEN A 1 1 1 BEN BEN . D 4 HOH A 1 3 3 HOH HOH . D 4 HOH A 2 4 4 HOH HOH . D 4 HOH A 3 5 5 HOH HOH . D 4 HOH A 4 6 6 HOH HOH . D 4 HOH A 5 7 7 HOH HOH . D 4 HOH A 6 8 8 HOH HOH . D 4 HOH A 7 9 9 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 12 12 HOH HOH . D 4 HOH A 10 13 13 HOH HOH . D 4 HOH A 11 14 14 HOH HOH . D 4 HOH A 12 15 15 HOH HOH . D 4 HOH A 13 16 16 HOH HOH . D 4 HOH A 14 18 18 HOH HOH . D 4 HOH A 15 19 19 HOH HOH . D 4 HOH A 16 20 20 HOH HOH . D 4 HOH A 17 22 22 HOH HOH . D 4 HOH A 18 24 24 HOH HOH . D 4 HOH A 19 25 25 HOH HOH . D 4 HOH A 20 26 26 HOH HOH . D 4 HOH A 21 27 27 HOH HOH . D 4 HOH A 22 28 28 HOH HOH . D 4 HOH A 23 30 30 HOH HOH . D 4 HOH A 24 31 31 HOH HOH . D 4 HOH A 25 32 32 HOH HOH . D 4 HOH A 26 33 33 HOH HOH . D 4 HOH A 27 35 35 HOH HOH . D 4 HOH A 28 36 36 HOH HOH . D 4 HOH A 29 37 37 HOH HOH . D 4 HOH A 30 42 42 HOH HOH . D 4 HOH A 31 44 44 HOH HOH . D 4 HOH A 32 45 45 HOH HOH . D 4 HOH A 33 46 46 HOH HOH . D 4 HOH A 34 47 47 HOH HOH . D 4 HOH A 35 48 48 HOH HOH . D 4 HOH A 36 50 50 HOH HOH . D 4 HOH A 37 51 51 HOH HOH . D 4 HOH A 38 52 52 HOH HOH . D 4 HOH A 39 53 53 HOH HOH . D 4 HOH A 40 54 54 HOH HOH . D 4 HOH A 41 55 55 HOH HOH . D 4 HOH A 42 56 56 HOH HOH . D 4 HOH A 43 58 58 HOH HOH . D 4 HOH A 44 60 60 HOH HOH . D 4 HOH A 45 61 61 HOH HOH . D 4 HOH A 46 62 62 HOH HOH . D 4 HOH A 47 63 63 HOH HOH . D 4 HOH A 48 64 64 HOH HOH . D 4 HOH A 49 65 65 HOH HOH . D 4 HOH A 50 66 66 HOH HOH . D 4 HOH A 51 67 67 HOH HOH . D 4 HOH A 52 68 68 HOH HOH . D 4 HOH A 53 70 70 HOH HOH . D 4 HOH A 54 71 71 HOH HOH . D 4 HOH A 55 72 72 HOH HOH . D 4 HOH A 56 73 73 HOH HOH . D 4 HOH A 57 74 74 HOH HOH . D 4 HOH A 58 75 75 HOH HOH . D 4 HOH A 59 76 76 HOH HOH . D 4 HOH A 60 78 78 HOH HOH . D 4 HOH A 61 79 79 HOH HOH . D 4 HOH A 62 80 80 HOH HOH . D 4 HOH A 63 81 81 HOH HOH . D 4 HOH A 64 87 87 HOH HOH . D 4 HOH A 65 88 88 HOH HOH . D 4 HOH A 66 89 89 HOH HOH . D 4 HOH A 67 90 90 HOH HOH . D 4 HOH A 68 93 93 HOH HOH . D 4 HOH A 69 94 94 HOH HOH . D 4 HOH A 70 96 96 HOH HOH . D 4 HOH A 71 97 97 HOH HOH . D 4 HOH A 72 98 98 HOH HOH . D 4 HOH A 73 99 99 HOH HOH . D 4 HOH A 74 100 100 HOH HOH . D 4 HOH A 75 102 102 HOH HOH . D 4 HOH A 76 103 103 HOH HOH . D 4 HOH A 77 105 105 HOH HOH . D 4 HOH A 78 107 107 HOH HOH . D 4 HOH A 79 108 108 HOH HOH . D 4 HOH A 80 110 110 HOH HOH . D 4 HOH A 81 112 112 HOH HOH . D 4 HOH A 82 114 114 HOH HOH . D 4 HOH A 83 117 117 HOH HOH . D 4 HOH A 84 120 120 HOH HOH . D 4 HOH A 85 121 121 HOH HOH . D 4 HOH A 86 124 124 HOH HOH . D 4 HOH A 87 125 125 HOH HOH . D 4 HOH A 88 126 126 HOH HOH . D 4 HOH A 89 127 127 HOH HOH . D 4 HOH A 90 128 128 HOH HOH . D 4 HOH A 91 130 130 HOH HOH . D 4 HOH A 92 136 136 HOH HOH . D 4 HOH A 93 137 137 HOH HOH . D 4 HOH A 94 139 139 HOH HOH . D 4 HOH A 95 140 140 HOH HOH . D 4 HOH A 96 141 141 HOH HOH . D 4 HOH A 97 143 143 HOH HOH . D 4 HOH A 98 145 145 HOH HOH . D 4 HOH A 99 146 146 HOH HOH . D 4 HOH A 100 147 147 HOH HOH . D 4 HOH A 101 149 149 HOH HOH . D 4 HOH A 102 150 150 HOH HOH . D 4 HOH A 103 151 151 HOH HOH . D 4 HOH A 104 154 154 HOH HOH . D 4 HOH A 105 155 155 HOH HOH . D 4 HOH A 106 156 156 HOH HOH . D 4 HOH A 107 160 160 HOH HOH . D 4 HOH A 108 162 162 HOH HOH . D 4 HOH A 109 163 163 HOH HOH . D 4 HOH A 110 164 164 HOH HOH . D 4 HOH A 111 165 165 HOH HOH . D 4 HOH A 112 167 167 HOH HOH . D 4 HOH A 113 168 168 HOH HOH . D 4 HOH A 114 169 169 HOH HOH . D 4 HOH A 115 170 170 HOH HOH . D 4 HOH A 116 171 171 HOH HOH . D 4 HOH A 117 173 173 HOH HOH . D 4 HOH A 118 175 175 HOH HOH . D 4 HOH A 119 177 177 HOH HOH . D 4 HOH A 120 178 178 HOH HOH . D 4 HOH A 121 179 179 HOH HOH . D 4 HOH A 122 180 180 HOH HOH . D 4 HOH A 123 181 181 HOH HOH . D 4 HOH A 124 182 182 HOH HOH . D 4 HOH A 125 186 186 HOH HOH . D 4 HOH A 126 187 187 HOH HOH . D 4 HOH A 127 188 188 HOH HOH . D 4 HOH A 128 189 189 HOH HOH . D 4 HOH A 129 190 190 HOH HOH . D 4 HOH A 130 192 192 HOH HOH . D 4 HOH A 131 193 193 HOH HOH . D 4 HOH A 132 194 194 HOH HOH . D 4 HOH A 133 195 195 HOH HOH . D 4 HOH A 134 196 196 HOH HOH . D 4 HOH A 135 198 198 HOH HOH . D 4 HOH A 136 199 199 HOH HOH . D 4 HOH A 137 203 203 HOH HOH . D 4 HOH A 138 204 204 HOH HOH . D 4 HOH A 139 206 206 HOH HOH . D 4 HOH A 140 208 208 HOH HOH . D 4 HOH A 141 209 209 HOH HOH . D 4 HOH A 142 211 211 HOH HOH . D 4 HOH A 143 214 214 HOH HOH . D 4 HOH A 144 215 215 HOH HOH . D 4 HOH A 145 217 217 HOH HOH . D 4 HOH A 146 218 218 HOH HOH . D 4 HOH A 147 219 219 HOH HOH . D 4 HOH A 148 220 220 HOH HOH . D 4 HOH A 149 221 221 HOH HOH . D 4 HOH A 150 222 222 HOH HOH . D 4 HOH A 151 223 223 HOH HOH . D 4 HOH A 152 224 224 HOH HOH . D 4 HOH A 153 225 225 HOH HOH . D 4 HOH A 154 226 226 HOH HOH . D 4 HOH A 155 227 227 HOH HOH . D 4 HOH A 156 229 229 HOH HOH . D 4 HOH A 157 231 231 HOH HOH . D 4 HOH A 158 236 236 HOH HOH . D 4 HOH A 159 237 237 HOH HOH . D 4 HOH A 160 239 239 HOH HOH . D 4 HOH A 161 240 240 HOH HOH . D 4 HOH A 162 243 243 HOH HOH . D 4 HOH A 163 245 245 HOH HOH . D 4 HOH A 164 246 246 HOH HOH . D 4 HOH A 165 247 247 HOH HOH . D 4 HOH A 166 249 249 HOH HOH . D 4 HOH A 167 250 250 HOH HOH . D 4 HOH A 168 626 1 HOH HOH . E 4 HOH B 1 148 148 HOH HOH . E 4 HOH B 2 149 2 HOH HOH . E 4 HOH B 3 150 11 HOH HOH . E 4 HOH B 4 151 17 HOH HOH . E 4 HOH B 5 152 152 HOH HOH . E 4 HOH B 6 153 153 HOH HOH . E 4 HOH B 7 154 21 HOH HOH . E 4 HOH B 8 155 23 HOH HOH . E 4 HOH B 9 156 29 HOH HOH . E 4 HOH B 10 157 157 HOH HOH . E 4 HOH B 11 158 158 HOH HOH . E 4 HOH B 12 159 159 HOH HOH . E 4 HOH B 13 160 34 HOH HOH . E 4 HOH B 14 161 161 HOH HOH . E 4 HOH B 15 162 38 HOH HOH . E 4 HOH B 16 163 39 HOH HOH . E 4 HOH B 17 164 40 HOH HOH . E 4 HOH B 18 165 41 HOH HOH . E 4 HOH B 19 166 166 HOH HOH . E 4 HOH B 20 167 43 HOH HOH . E 4 HOH B 21 168 49 HOH HOH . E 4 HOH B 22 169 57 HOH HOH . E 4 HOH B 23 170 59 HOH HOH . E 4 HOH B 24 171 69 HOH HOH . E 4 HOH B 25 172 172 HOH HOH . E 4 HOH B 26 173 77 HOH HOH . E 4 HOH B 27 174 174 HOH HOH . E 4 HOH B 28 175 82 HOH HOH . E 4 HOH B 29 176 176 HOH HOH . E 4 HOH B 30 177 83 HOH HOH . E 4 HOH B 31 178 84 HOH HOH . E 4 HOH B 32 179 85 HOH HOH . E 4 HOH B 33 180 86 HOH HOH . E 4 HOH B 34 181 91 HOH HOH . E 4 HOH B 35 182 92 HOH HOH . E 4 HOH B 36 183 183 HOH HOH . E 4 HOH B 37 184 184 HOH HOH . E 4 HOH B 38 185 185 HOH HOH . E 4 HOH B 39 186 95 HOH HOH . E 4 HOH B 40 187 101 HOH HOH . E 4 HOH B 41 188 104 HOH HOH . E 4 HOH B 42 189 106 HOH HOH . E 4 HOH B 43 190 109 HOH HOH . E 4 HOH B 44 191 191 HOH HOH . E 4 HOH B 45 192 111 HOH HOH . E 4 HOH B 46 193 113 HOH HOH . E 4 HOH B 47 194 115 HOH HOH . E 4 HOH B 48 195 116 HOH HOH . E 4 HOH B 49 196 118 HOH HOH . E 4 HOH B 50 197 197 HOH HOH . E 4 HOH B 51 198 119 HOH HOH . E 4 HOH B 52 199 122 HOH HOH . E 4 HOH B 53 200 200 HOH HOH . E 4 HOH B 54 201 201 HOH HOH . E 4 HOH B 55 202 202 HOH HOH . E 4 HOH B 56 203 123 HOH HOH . E 4 HOH B 57 204 129 HOH HOH . E 4 HOH B 58 205 205 HOH HOH . E 4 HOH B 59 206 131 HOH HOH . E 4 HOH B 60 207 207 HOH HOH . E 4 HOH B 61 208 132 HOH HOH . E 4 HOH B 62 209 133 HOH HOH . E 4 HOH B 63 210 210 HOH HOH . E 4 HOH B 64 211 134 HOH HOH . E 4 HOH B 65 212 212 HOH HOH . E 4 HOH B 66 213 213 HOH HOH . E 4 HOH B 67 214 135 HOH HOH . E 4 HOH B 68 215 138 HOH HOH . E 4 HOH B 69 216 216 HOH HOH . E 4 HOH B 70 217 142 HOH HOH . E 4 HOH B 71 218 144 HOH HOH . E 4 HOH B 72 228 228 HOH HOH . E 4 HOH B 73 230 230 HOH HOH . E 4 HOH B 74 232 232 HOH HOH . E 4 HOH B 75 233 233 HOH HOH . E 4 HOH B 76 234 234 HOH HOH . E 4 HOH B 77 235 235 HOH HOH . E 4 HOH B 78 238 238 HOH HOH . E 4 HOH B 79 241 241 HOH HOH . E 4 HOH B 80 242 242 HOH HOH . E 4 HOH B 81 244 244 HOH HOH . E 4 HOH B 82 248 248 HOH HOH . E 4 HOH B 83 251 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . C 3 -2.957 -19.712 -4.29 1 28.05 ? C1 BEN 1 A 1 HETATM 2 C C2 BEN . . . C 3 -2.883 -18.924 -3.136 1 28.51 ? C2 BEN 1 A 1 HETATM 3 C C3 BEN . . . C 3 -3.854 -17.954 -2.888 1 28.4 ? C3 BEN 1 A 1 HETATM 4 C C4 BEN . . . C 3 -4.899 -17.765 -3.792 1 28.42 ? C4 BEN 1 A 1 HETATM 5 C C5 BEN . . . C 3 -4.975 -18.543 -4.945 1 28.02 ? C5 BEN 1 A 1 HETATM 6 C C6 BEN . . . C 3 -4.007 -19.518 -5.192 1 28.32 ? C6 BEN 1 A 1 HETATM 7 C C BEN . . . C 3 -1.98 -20.689 -4.539 1 28.04 ? C BEN 1 A 1 HETATM 8 N N1 BEN . . . C 3 -0.722 -20.483 -4.192 1 27.29 ? N1 BEN 1 A 1 HETATM 9 N N2 BEN . . . C 3 -2.277 -21.84 -5.128 1 28.58 ? N2 BEN 1 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #