data_3MY0 # _model_server_result.job_id 7Ib93o8kg0GH-8aGn8tSwg _model_server_result.datetime_utc '2024-11-23 09:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3my0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":600}' # _entry.id 3MY0 # _exptl.entry_id 3MY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.482 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MY0 _cell.length_a 118.77 _cell.length_b 118.77 _cell.length_c 510.791 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 PISA monomeric 1 author_and_software_defined_assembly 9 PISA monomeric 1 author_and_software_defined_assembly 10 PISA monomeric 1 author_and_software_defined_assembly 11 PISA monomeric 1 author_and_software_defined_assembly 12 PISA monomeric 1 author_and_software_defined_assembly 13 PISA monomeric 1 author_and_software_defined_assembly 14 PISA monomeric 1 author_and_software_defined_assembly 15 PISA monomeric 1 author_and_software_defined_assembly 16 PISA monomeric 1 author_and_software_defined_assembly 17 PISA monomeric 1 author_and_software_defined_assembly 18 PISA monomeric 1 author_and_software_defined_assembly 19 PISA monomeric 1 author_and_software_defined_assembly 20 PISA monomeric 1 author_and_software_defined_assembly 21 PISA monomeric 1 author_and_software_defined_assembly 22 PISA monomeric 1 author_and_software_defined_assembly 23 PISA monomeric 1 author_and_software_defined_assembly 24 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,Y,WA 1 1 B,Z,XA 2 1 C,AA,YA 3 1 D,BA,ZA 4 1 E,CA,AB 5 1 F,DA,BB 6 1 G,EA,CB 7 1 H,FA,DB 8 1 I,GA,EB 9 1 J,HA,FB 10 1 K,IA 11 1 L,JA,GB 12 1 M,KA,HB 13 1 N,LA,IB 14 1 O,MA,JB 15 1 P,NA,KB 16 1 Q,OA,LB 17 1 R,PA,MB 18 1 S,QA,NB 19 1 T,RA,OB 20 1 U,SA,PB 21 1 V,TA,QB 22 1 W,UA,RB 23 1 X,VA 24 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N # _chem_comp.formula 'C25 H22 N6' _chem_comp.formula_weight 406.482 _chem_comp.id LDN _chem_comp.mon_nstd_flag . _chem_comp.name 4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAA LDN doub 173 n y CAA CAB LDN sing 174 n y CAA HAA LDN sing 175 n n CAJ CAB LDN doub 176 n y CAB HAB LDN sing 177 n n CAC NAR LDN sing 178 n y CAC CAD LDN doub 179 n y CAC HAC LDN sing 180 n n CAD CAY LDN sing 181 n y CAD HAD LDN sing 182 n n CAV CAE LDN doub 183 n y CAE CAG LDN sing 184 n y CAE HAE LDN sing 185 n n CAF CAV LDN sing 186 n y CAF CAH LDN doub 187 n y CAF HAF LDN sing 188 n n CAX CAG LDN doub 189 n y CAG HAG LDN sing 190 n n CAH CAX LDN sing 191 n y CAH HAH LDN sing 192 n n CBA CAI LDN sing 193 n y CAI HAI LDN sing 194 n n CBB CAJ LDN sing 195 n y CAJ HAJ LDN sing 196 n n NAS CAK LDN doub 197 n y CAK CAW LDN sing 198 n y CAK HAK LDN sing 199 n n CAZ CAL LDN sing 200 n y CAL NAT LDN doub 201 n y CAL HAL LDN sing 202 n n CAW CAM LDN doub 203 n y NBE CAM LDN sing 204 n y CAM HAM LDN sing 205 n n NAU CAN LDN sing 206 n n CAP CAN LDN sing 207 n n CAN HAN LDN sing 208 n n CAN HANA LDN sing 209 n n CAQ CAO LDN sing 210 n n CAO NAU LDN sing 211 n n CAO HAO LDN sing 212 n n CAO HAOA LDN sing 213 n n NBD CAP LDN sing 214 n n CAP HAP LDN sing 215 n n CAP HAPA LDN sing 216 n n CAQ NBD LDN sing 217 n n CAQ HAQ LDN sing 218 n n CAQ HAQA LDN sing 219 n n NAR CBA LDN doub 220 n y NAS CBC LDN sing 221 n y NBE NAT LDN sing 222 n y NAU HNAU LDN sing 223 n n CAW CAV LDN sing 224 n y CAX NBD LDN sing 225 n n CAY CBB LDN doub 226 n y CAY CAZ LDN sing 227 n y CBC CAZ LDN doub 228 n y CBA CBB LDN sing 229 n y CBC NBE LDN sing 230 n y # _atom_sites.entry_id 3MY0 _atom_sites.fract_transf_matrix[1][1] 0.00842 _atom_sites.fract_transf_matrix[1][2] 0.004861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 2 LDN A 1 600 600 LDN LDN . Z 2 LDN B 1 600 600 LDN LDN . AA 2 LDN C 1 600 600 LDN LDN . BA 2 LDN D 1 600 600 LDN LDN . CA 2 LDN E 1 600 600 LDN LDN . DA 2 LDN F 1 600 600 LDN LDN . EA 2 LDN G 1 600 600 LDN LDN . FA 2 LDN H 1 600 600 LDN LDN . GA 2 LDN I 1 600 600 LDN LDN . HA 2 LDN J 1 600 600 LDN LDN . IA 2 LDN K 1 600 600 LDN LDN . JA 2 LDN L 1 600 600 LDN LDN . KA 2 LDN M 1 600 600 LDN LDN . LA 2 LDN N 1 600 600 LDN LDN . MA 2 LDN O 1 600 600 LDN LDN . NA 2 LDN P 1 600 600 LDN LDN . OA 2 LDN Q 1 600 600 LDN LDN . PA 2 LDN R 1 600 600 LDN LDN . QA 2 LDN S 1 600 600 LDN LDN . RA 2 LDN T 1 600 600 LDN LDN . SA 2 LDN U 1 600 600 LDN LDN . TA 2 LDN V 1 600 600 LDN LDN . UA 2 LDN W 1 600 600 LDN LDN . VA 2 LDN X 1 600 600 LDN LDN . WA 3 HOH A 1 77 77 HOH HOH . WA 3 HOH A 2 88 88 HOH HOH . WA 3 HOH A 3 105 105 HOH HOH . WA 3 HOH A 4 106 106 HOH HOH . XA 3 HOH B 1 3 3 HOH HOH . XA 3 HOH B 2 4 4 HOH HOH . XA 3 HOH B 3 5 5 HOH HOH . XA 3 HOH B 4 6 6 HOH HOH . XA 3 HOH B 5 8 8 HOH HOH . XA 3 HOH B 6 9 9 HOH HOH . XA 3 HOH B 7 14 14 HOH HOH . XA 3 HOH B 8 20 20 HOH HOH . XA 3 HOH B 9 55 55 HOH HOH . XA 3 HOH B 10 56 56 HOH HOH . XA 3 HOH B 11 99 99 HOH HOH . XA 3 HOH B 12 107 107 HOH HOH . YA 3 HOH C 1 5 5 HOH HOH . YA 3 HOH C 2 7 7 HOH HOH . YA 3 HOH C 3 16 16 HOH HOH . YA 3 HOH C 4 30 30 HOH HOH . YA 3 HOH C 5 34 34 HOH HOH . YA 3 HOH C 6 38 38 HOH HOH . YA 3 HOH C 7 43 43 HOH HOH . YA 3 HOH C 8 102 102 HOH HOH . YA 3 HOH C 9 108 108 HOH HOH . YA 3 HOH C 10 109 109 HOH HOH . YA 3 HOH C 11 110 110 HOH HOH . ZA 3 HOH D 1 11 11 HOH HOH . ZA 3 HOH D 2 18 18 HOH HOH . ZA 3 HOH D 3 44 44 HOH HOH . ZA 3 HOH D 4 51 51 HOH HOH . ZA 3 HOH D 5 53 53 HOH HOH . ZA 3 HOH D 6 111 111 HOH HOH . ZA 3 HOH D 7 112 112 HOH HOH . AB 3 HOH E 1 10 10 HOH HOH . AB 3 HOH E 2 31 31 HOH HOH . AB 3 HOH E 3 47 47 HOH HOH . AB 3 HOH E 4 113 113 HOH HOH . BB 3 HOH F 1 1 1 HOH HOH . BB 3 HOH F 2 2 2 HOH HOH . BB 3 HOH F 3 3 3 HOH HOH . BB 3 HOH F 4 22 22 HOH HOH . BB 3 HOH F 5 73 73 HOH HOH . BB 3 HOH F 6 75 75 HOH HOH . BB 3 HOH F 7 82 82 HOH HOH . BB 3 HOH F 8 114 114 HOH HOH . CB 3 HOH G 1 10 10 HOH HOH . CB 3 HOH G 2 70 70 HOH HOH . CB 3 HOH G 3 95 95 HOH HOH . CB 3 HOH G 4 115 115 HOH HOH . CB 3 HOH G 5 116 116 HOH HOH . CB 3 HOH G 6 117 117 HOH HOH . DB 3 HOH H 1 29 29 HOH HOH . DB 3 HOH H 2 39 39 HOH HOH . DB 3 HOH H 3 40 40 HOH HOH . DB 3 HOH H 4 41 41 HOH HOH . DB 3 HOH H 5 60 60 HOH HOH . DB 3 HOH H 6 118 118 HOH HOH . EB 3 HOH I 1 21 21 HOH HOH . EB 3 HOH I 2 83 83 HOH HOH . EB 3 HOH I 3 89 89 HOH HOH . FB 3 HOH J 1 15 15 HOH HOH . FB 3 HOH J 2 19 19 HOH HOH . GB 3 HOH L 1 15 15 HOH HOH . GB 3 HOH L 2 33 33 HOH HOH . GB 3 HOH L 3 54 54 HOH HOH . GB 3 HOH L 4 69 69 HOH HOH . GB 3 HOH L 5 122 122 HOH HOH . GB 3 HOH L 6 123 123 HOH HOH . HB 3 HOH M 1 76 76 HOH HOH . IB 3 HOH N 1 17 17 HOH HOH . IB 3 HOH N 2 28 28 HOH HOH . IB 3 HOH N 3 66 66 HOH HOH . IB 3 HOH N 4 91 91 HOH HOH . IB 3 HOH N 5 100 100 HOH HOH . IB 3 HOH N 6 101 101 HOH HOH . JB 3 HOH O 1 42 42 HOH HOH . JB 3 HOH O 2 124 124 HOH HOH . KB 3 HOH P 1 19 19 HOH HOH . KB 3 HOH P 2 20 20 HOH HOH . KB 3 HOH P 3 24 24 HOH HOH . KB 3 HOH P 4 59 59 HOH HOH . LB 3 HOH Q 1 13 13 HOH HOH . LB 3 HOH Q 2 48 48 HOH HOH . LB 3 HOH Q 3 78 78 HOH HOH . LB 3 HOH Q 4 120 120 HOH HOH . LB 3 HOH Q 5 121 121 HOH HOH . LB 3 HOH Q 6 125 125 HOH HOH . LB 3 HOH Q 7 144 144 HOH HOH . LB 3 HOH Q 8 149 149 HOH HOH . MB 3 HOH R 1 74 74 HOH HOH . MB 3 HOH R 2 86 86 HOH HOH . MB 3 HOH R 3 126 126 HOH HOH . MB 3 HOH R 4 127 127 HOH HOH . MB 3 HOH R 5 148 148 HOH HOH . NB 3 HOH S 1 128 128 HOH HOH . NB 3 HOH S 2 129 129 HOH HOH . NB 3 HOH S 3 130 130 HOH HOH . NB 3 HOH S 4 131 131 HOH HOH . NB 3 HOH S 5 132 132 HOH HOH . NB 3 HOH S 6 147 147 HOH HOH . OB 3 HOH T 1 2 2 HOH HOH . OB 3 HOH T 2 12 12 HOH HOH . OB 3 HOH T 3 133 133 HOH HOH . OB 3 HOH T 4 145 145 HOH HOH . OB 3 HOH T 5 146 146 HOH HOH . PB 3 HOH U 1 13 13 HOH HOH . PB 3 HOH U 2 16 16 HOH HOH . PB 3 HOH U 3 37 37 HOH HOH . PB 3 HOH U 4 134 134 HOH HOH . PB 3 HOH U 5 135 135 HOH HOH . PB 3 HOH U 6 136 136 HOH HOH . PB 3 HOH U 7 137 137 HOH HOH . PB 3 HOH U 8 138 138 HOH HOH . PB 3 HOH U 9 139 139 HOH HOH . QB 3 HOH V 1 140 140 HOH HOH . QB 3 HOH V 2 141 141 HOH HOH . RB 3 HOH W 1 17 17 HOH HOH . RB 3 HOH W 2 18 18 HOH HOH . RB 3 HOH W 3 21 21 HOH HOH . RB 3 HOH W 4 90 90 HOH HOH . RB 3 HOH W 5 103 103 HOH HOH . RB 3 HOH W 6 104 104 HOH HOH . RB 3 HOH W 7 119 119 HOH HOH . RB 3 HOH W 8 142 142 HOH HOH . RB 3 HOH W 9 143 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA LDN . . . AA 2 52.742 20.155 -12.186 1 27.97 ? CAA LDN 600 C 1 HETATM 2 C CAB LDN . . . AA 2 53.667 20.123 -13.227 1 29.72 ? CAB LDN 600 C 1 HETATM 3 C CAC LDN . . . AA 2 56.266 19.48 -9.037 1 27.91 ? CAC LDN 600 C 1 HETATM 4 C CAD LDN . . . AA 2 57.222 19.454 -10.03 1 30.84 ? CAD LDN 600 C 1 HETATM 5 C CAE LDN . . . AA 2 58.426 23.482 -17.305 1 42.09 ? CAE LDN 600 C 1 HETATM 6 C CAF LDN . . . AA 2 60.585 22.415 -17.174 1 38.26 ? CAF LDN 600 C 1 HETATM 7 C CAG LDN . . . AA 2 58.78 24.171 -18.464 1 37.85 ? CAG LDN 600 C 1 HETATM 8 C CAH LDN . . . AA 2 60.926 23.087 -18.333 1 41.33 ? CAH LDN 600 C 1 HETATM 9 C CAI LDN . . . AA 2 53.212 19.992 -10.871 1 33.3 ? CAI LDN 600 C 1 HETATM 10 C CAJ LDN . . . AA 2 55.03 19.953 -12.964 1 30.95 ? CAJ LDN 600 C 1 HETATM 11 C CAK LDN . . . AA 2 57.849 22.379 -14.706 1 34.81 ? CAK LDN 600 C 1 HETATM 12 C CAL LDN . . . AA 2 58.675 18.58 -12.537 1 29 ? CAL LDN 600 C 1 HETATM 13 C CAM LDN . . . AA 2 59.511 20.698 -15.185 1 34.81 ? CAM LDN 600 C 1 HETATM 14 C CAN LDN . . . AA 2 60.324 25.958 -22.199 1 44.95 ? CAN LDN 600 C 1 HETATM 15 C CAO LDN . . . AA 2 62.081 24.344 -22.14 1 37.55 ? CAO LDN 600 C 1 HETATM 16 C CAP LDN . . . AA 2 59.708 25.644 -20.815 1 45.35 ? CAP LDN 600 C 1 HETATM 17 C CAQ LDN . . . AA 2 61.875 24.199 -20.624 1 38.21 ? CAQ LDN 600 C 1 HETATM 18 N NAR LDN . . . AA 2 54.989 19.657 -9.342 1 29.39 ? NAR LDN 600 C 1 HETATM 19 N NAS LDN . . . AA 2 57.437 21.664 -13.666 1 36.78 ? NAS LDN 600 C 1 HETATM 20 N NAT LDN . . . AA 2 59.401 18.884 -13.599 1 32.8 ? NAT LDN 600 C 1 HETATM 21 N NAU LDN . . . AA 2 60.836 24.716 -22.813 1 40.05 ? NAU LDN 600 C 1 HETATM 22 C CAV LDN . . . AA 2 59.328 22.631 -16.629 1 40.46 ? CAV LDN 600 C 1 HETATM 23 C CAW LDN . . . AA 2 58.914 21.927 -15.488 1 37.05 ? CAW LDN 600 C 1 HETATM 24 C CAX LDN . . . AA 2 60.048 23.955 -18.98 1 40.81 ? CAX LDN 600 C 1 HETATM 25 C CAY LDN . . . AA 2 56.838 19.618 -11.361 1 30.89 ? CAY LDN 600 C 1 HETATM 26 C CAZ LDN . . . AA 2 57.8 19.552 -12.361 1 28.54 ? CAZ LDN 600 C 1 HETATM 27 C CBA LDN . . . AA 2 54.575 19.812 -10.605 1 30.15 ? CBA LDN 600 C 1 HETATM 28 C CBB LDN . . . AA 2 55.491 19.795 -11.654 1 29.83 ? CBB LDN 600 C 1 HETATM 29 C CBC LDN . . . AA 2 58.007 20.481 -13.341 1 29.61 ? CBC LDN 600 C 1 HETATM 30 N NBD LDN . . . AA 2 60.512 24.586 -20.142 1 41.18 ? NBD LDN 600 C 1 HETATM 31 N NBE LDN . . . AA 2 59.05 19.966 -14.08 1 32.5 ? NBE LDN 600 C 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #