data_3MY1 # _model_server_result.job_id ffHIsMwmtFVoSenQPkzpXA _model_server_result.datetime_utc '2025-01-02 18:32:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3my1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":263}' # _entry.id 3MY1 # _exptl.entry_id 3MY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3MY1 _cell.length_a 173.789 _cell.length_b 173.789 _cell.length_c 99.221 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 186 A TYR 185 1_555 A N TPO 187 A TPO 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C TPO 187 A TPO 186 1_555 A N ASN 188 A ASN 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3MY1 _atom_sites.fract_transf_matrix[1][1] 0.005754 _atom_sites.fract_transf_matrix[1][2] 0.003322 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 332 332 PO4 PO4 . D 4 GOL A 1 333 333 GOL GOL . E 5 RFZ A 1 336 336 RFZ RFZ . F 4 GOL B 1 261 261 GOL GOL . G 4 GOL B 1 262 262 GOL GOL . H 4 GOL B 1 263 263 GOL GOL . I 4 GOL B 1 265 265 GOL GOL . J 6 HOH A 1 331 331 HOH HOH . J 6 HOH A 2 334 334 HOH HOH . J 6 HOH A 3 335 335 HOH HOH . J 6 HOH A 4 337 337 HOH HOH . J 6 HOH A 5 338 338 HOH HOH . J 6 HOH A 6 339 339 HOH HOH . J 6 HOH A 7 340 340 HOH HOH . J 6 HOH A 8 341 341 HOH HOH . J 6 HOH A 9 342 342 HOH HOH . J 6 HOH A 10 343 343 HOH HOH . J 6 HOH A 11 344 344 HOH HOH . J 6 HOH A 12 345 345 HOH HOH . J 6 HOH A 13 346 346 HOH HOH . J 6 HOH A 14 347 347 HOH HOH . J 6 HOH A 15 348 348 HOH HOH . J 6 HOH A 16 349 349 HOH HOH . K 6 HOH B 1 260 260 HOH HOH . K 6 HOH B 2 264 264 HOH HOH . K 6 HOH B 3 266 266 HOH HOH . K 6 HOH B 4 267 267 HOH HOH . K 6 HOH B 5 268 268 HOH HOH . K 6 HOH B 6 269 269 HOH HOH . K 6 HOH B 7 270 270 HOH HOH . K 6 HOH B 8 271 271 HOH HOH . K 6 HOH B 9 272 272 HOH HOH . K 6 HOH B 10 273 273 HOH HOH . K 6 HOH B 11 274 274 HOH HOH . K 6 HOH B 12 275 275 HOH HOH . K 6 HOH B 13 276 276 HOH HOH . K 6 HOH B 14 277 277 HOH HOH . K 6 HOH B 15 278 278 HOH HOH . K 6 HOH B 16 279 279 HOH HOH . K 6 HOH B 17 280 280 HOH HOH . K 6 HOH B 18 281 281 HOH HOH . K 6 HOH B 19 282 282 HOH HOH . K 6 HOH B 20 283 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -3.6 16.356 -7.354 1 120.13 ? C1 GOL 263 B 1 HETATM 2 O O1 GOL . . . H 4 -3.153 17.21 -6.312 1 114.26 ? O1 GOL 263 B 1 HETATM 3 C C2 GOL . . . H 4 -3.291 16.901 -8.757 1 113.42 ? C2 GOL 263 B 1 HETATM 4 O O2 GOL . . . H 4 -3.385 15.904 -9.784 1 93.04 ? O2 GOL 263 B 1 HETATM 5 C C3 GOL . . . H 4 -1.971 17.691 -8.723 1 110.52 ? C3 GOL 263 B 1 HETATM 6 O O3 GOL . . . H 4 -2.169 18.903 -8.011 1 101.43 ? O3 GOL 263 B 1 # _model_server_stats.io_time_ms 157 _model_server_stats.parse_time_ms 170 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #