data_3MY6
#
_model_server_result.job_id            j9EqzGPStyAI8hEOfyjkpw 
_model_server_result.datetime_utc      '2024-10-22 18:07:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3my6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":247}' 
#
_entry.id    3MY6 
#
_exptl.entry_id    3MY6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              165.153 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-7-methyl-1,7-dihydro-6H-purin-6-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3MY6 
_cell.length_a            131.428 
_cell.length_b            131.428 
_cell.length_c            39.808 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MY6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 301 NAG 
2 n B NAG 2 B 2 NAG A 302 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 227 A ASN 227 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? 
#
_chem_comp.formula           'C6 H7 N5 O' 
_chem_comp.formula_weight    165.153 
_chem_comp.id                MY6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-7-methyl-1,7-dihydro-6H-purin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C1 MY6 sing 224 n n 
C1 H1 MY6 sing 225 n n 
C1 H1A MY6 sing 226 n n 
C1 H1B MY6 sing 227 n n 
C3 N2 MY6 doub 228 n y 
N2 C12 MY6 sing 229 n y 
C3 N4 MY6 sing 230 n y 
C3 H3 MY6 sing 231 n n 
N4 C5 MY6 sing 232 n y 
C12 C5 MY6 doub 233 n y 
C5 C6 MY6 sing 234 n n 
C6 N8 MY6 sing 235 n n 
C6 O7 MY6 doub 236 n n 
C9 N8 MY6 sing 237 n n 
N8 HN8 MY6 sing 238 n n 
N11 C9 MY6 doub 239 n n 
C9 N10 MY6 sing 240 n n 
N10 HN10 MY6 sing 241 n n 
N10 HN1A MY6 sing 242 n n 
C12 N11 MY6 sing 243 n n 
#
_atom_sites.entry_id                     3MY6 
_atom_sites.fract_transf_matrix[1][1]    0.007609 
_atom_sites.fract_transf_matrix[1][2]    0.004393 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025121 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MY6 A 1 247 247 MY6 MY6 . 
D 4 HOH A 1 248 248 HOH HOH . 
D 4 HOH A 2 249 249 HOH HOH . 
D 4 HOH A 3 250 250 HOH HOH . 
D 4 HOH A 4 251 251 HOH HOH . 
D 4 HOH A 5 252 252 HOH HOH . 
D 4 HOH A 6 253 253 HOH HOH . 
D 4 HOH A 7 254 254 HOH HOH . 
D 4 HOH A 8 255 255 HOH HOH . 
D 4 HOH A 9 256 256 HOH HOH . 
D 4 HOH A 10 257 257 HOH HOH . 
D 4 HOH A 11 258 258 HOH HOH . 
D 4 HOH A 12 259 259 HOH HOH . 
D 4 HOH A 13 260 260 HOH HOH . 
D 4 HOH A 14 261 261 HOH HOH . 
D 4 HOH A 15 262 262 HOH HOH . 
D 4 HOH A 16 263 263 HOH HOH . 
D 4 HOH A 17 264 264 HOH HOH . 
D 4 HOH A 18 265 265 HOH HOH . 
D 4 HOH A 19 266 266 HOH HOH . 
D 4 HOH A 20 267 267 HOH HOH . 
D 4 HOH A 21 268 268 HOH HOH . 
D 4 HOH A 22 269 269 HOH HOH . 
D 4 HOH A 23 270 270 HOH HOH . 
D 4 HOH A 24 271 271 HOH HOH . 
D 4 HOH A 25 272 272 HOH HOH . 
D 4 HOH A 26 273 273 HOH HOH . 
D 4 HOH A 27 274 274 HOH HOH . 
D 4 HOH A 28 275 275 HOH HOH . 
D 4 HOH A 29 276 276 HOH HOH . 
D 4 HOH A 30 277 277 HOH HOH . 
D 4 HOH A 31 278 278 HOH HOH . 
D 4 HOH A 32 279 279 HOH HOH . 
D 4 HOH A 33 280 280 HOH HOH . 
D 4 HOH A 34 281 281 HOH HOH . 
D 4 HOH A 35 282 282 HOH HOH . 
D 4 HOH A 36 283 283 HOH HOH . 
D 4 HOH A 37 284 284 HOH HOH . 
D 4 HOH A 38 285 285 HOH HOH . 
D 4 HOH A 39 286 286 HOH HOH . 
D 4 HOH A 40 287 287 HOH HOH . 
D 4 HOH A 41 288 288 HOH HOH . 
D 4 HOH A 42 289 289 HOH HOH . 
D 4 HOH A 43 290 290 HOH HOH . 
D 4 HOH A 44 291 291 HOH HOH . 
D 4 HOH A 45 292 292 HOH HOH . 
D 4 HOH A 46 293 293 HOH HOH . 
D 4 HOH A 47 294 294 HOH HOH . 
D 4 HOH A 48 295 295 HOH HOH . 
D 4 HOH A 49 296 296 HOH HOH . 
D 4 HOH A 50 297 297 HOH HOH . 
D 4 HOH A 51 298 298 HOH HOH . 
D 4 HOH A 52 299 299 HOH HOH . 
D 4 HOH A 53 300 300 HOH HOH . 
D 4 HOH A 54 303 303 HOH HOH . 
D 4 HOH A 55 304 304 HOH HOH . 
D 4 HOH A 56 305 305 HOH HOH . 
D 4 HOH A 57 306 306 HOH HOH . 
D 4 HOH A 58 307 307 HOH HOH . 
D 4 HOH A 59 308 308 HOH HOH . 
D 4 HOH A 60 309 309 HOH HOH . 
D 4 HOH A 61 310 310 HOH HOH . 
D 4 HOH A 62 311 311 HOH HOH . 
D 4 HOH A 63 312 312 HOH HOH . 
D 4 HOH A 64 313 313 HOH HOH . 
D 4 HOH A 65 314 314 HOH HOH . 
D 4 HOH A 66 315 315 HOH HOH . 
D 4 HOH A 67 316 316 HOH HOH . 
D 4 HOH A 68 317 317 HOH HOH . 
D 4 HOH A 69 318 318 HOH HOH . 
D 4 HOH A 70 319 319 HOH HOH . 
D 4 HOH A 71 320 320 HOH HOH . 
D 4 HOH A 72 321 321 HOH HOH . 
D 4 HOH A 73 322 322 HOH HOH . 
D 4 HOH A 74 323 323 HOH HOH . 
D 4 HOH A 75 324 324 HOH HOH . 
D 4 HOH A 76 325 325 HOH HOH . 
D 4 HOH A 77 326 326 HOH HOH . 
D 4 HOH A 78 327 327 HOH HOH . 
D 4 HOH A 79 328 328 HOH HOH . 
D 4 HOH A 80 329 329 HOH HOH . 
D 4 HOH A 81 330 330 HOH HOH . 
D 4 HOH A 82 331 331 HOH HOH . 
D 4 HOH A 83 332 332 HOH HOH . 
D 4 HOH A 84 333 333 HOH HOH . 
D 4 HOH A 85 334 334 HOH HOH . 
D 4 HOH A 86 335 335 HOH HOH . 
D 4 HOH A 87 336 336 HOH HOH . 
D 4 HOH A 88 337 337 HOH HOH . 
D 4 HOH A 89 338 338 HOH HOH . 
D 4 HOH A 90 339 339 HOH HOH . 
D 4 HOH A 91 340 340 HOH HOH . 
D 4 HOH A 92 341 341 HOH HOH . 
D 4 HOH A 93 342 342 HOH HOH . 
D 4 HOH A 94 343 343 HOH HOH . 
D 4 HOH A 95 344 344 HOH HOH . 
D 4 HOH A 96 345 345 HOH HOH . 
D 4 HOH A 97 346 346 HOH HOH . 
D 4 HOH A 98 347 347 HOH HOH . 
D 4 HOH A 99 348 348 HOH HOH . 
D 4 HOH A 100 349 349 HOH HOH . 
D 4 HOH A 101 350 350 HOH HOH . 
D 4 HOH A 102 351 351 HOH HOH . 
D 4 HOH A 103 352 352 HOH HOH . 
D 4 HOH A 104 353 353 HOH HOH . 
D 4 HOH A 105 354 354 HOH HOH . 
D 4 HOH A 106 355 355 HOH HOH . 
D 4 HOH A 107 356 356 HOH HOH . 
D 4 HOH A 108 357 357 HOH HOH . 
D 4 HOH A 109 358 358 HOH HOH . 
D 4 HOH A 110 359 359 HOH HOH . 
D 4 HOH A 111 360 360 HOH HOH . 
D 4 HOH A 112 361 361 HOH HOH . 
D 4 HOH A 113 362 362 HOH HOH . 
D 4 HOH A 114 363 363 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MY6 . . . C 3 21.532 8.117 9.737 1 75.5 ? C1 MY6 247 A 1 
HETATM 2 N N2 MY6 . . . C 3 22.714 5.061 8.24 1 76.32 ? N2 MY6 247 A 1 
HETATM 3 C C3 MY6 . . . C 3 22.329 6.343 8.209 1 76.03 ? C3 MY6 247 A 1 
HETATM 4 N N4 MY6 . . . C 3 21.999 6.727 9.444 1 76.24 ? N4 MY6 247 A 1 
HETATM 5 C C5 MY6 . . . C 3 22.174 5.692 10.314 1 75.25 ? C5 MY6 247 A 1 
HETATM 6 C C6 MY6 . . . C 3 22.007 5.436 11.729 1 74.14 ? C6 MY6 247 A 1 
HETATM 7 O O7 MY6 . . . C 3 21.572 6.393 12.615 1 72.68 ? O7 MY6 247 A 1 
HETATM 8 N N8 MY6 . . . C 3 22.315 4.18 12.23 1 73.63 ? N8 MY6 247 A 1 
HETATM 9 C C9 MY6 . . . C 3 22.766 3.15 11.423 1 73.98 ? C9 MY6 247 A 1 
HETATM 10 N N10 MY6 . . . C 3 23.055 1.95 11.94 1 72.19 ? N10 MY6 247 A 1 
HETATM 11 N N11 MY6 . . . C 3 22.925 3.373 10.07 1 74.54 ? N11 MY6 247 A 1 
HETATM 12 C C12 MY6 . . . C 3 22.641 4.61 9.504 1 75.77 ? C12 MY6 247 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#