data_3MZ3
#
_model_server_result.job_id            rhBJ1OwK17BwSe676Cm-jw 
_model_server_result.datetime_utc      '2024-12-27 03:07:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mz3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":390}' 
#
_entry.id    3MZ3 
#
_exptl.entry_id    3MZ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              307.388 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.07 
_cell.angle_gamma         90 
_cell.entry_id            3MZ3 
_cell.length_a            55.626 
_cell.length_b            86.143 
_cell.length_c            94.508 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MZ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 176 A ASP 176 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc2 A O ASP 176 A ASP 176 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 A O ASP 178 A ASP 178 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc6 A O HIS 180 A HIS 180 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc7 A O PHE 189 A PHE 189 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc8 A O THR 192 A THR 192 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc9 A O VAL 195 A VAL 195 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc10 A OG SER 199 A SER 199 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? 
metalc ? metalc11 A O LEU 200 A LEU 200 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc12 A O TYR 225 A TYR 225 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
metalc ? metalc14 F O4 B3N . A B3N 390 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc15 F O2 B3N . A B3N 390 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc16 B OD1 ASP 176 B ASP 176 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
metalc ? metalc17 B O ASP 176 B ASP 176 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc18 B OD2 ASP 178 B ASP 178 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
metalc ? metalc19 B O ASP 178 B ASP 178 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc20 B ND1 HIS 180 B HIS 180 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc21 B O HIS 180 B HIS 180 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc22 B O PHE 189 B PHE 189 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc23 B O THR 192 B THR 192 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? 
metalc ? metalc24 B O VAL 195 B VAL 195 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc25 B OG SER 199 B SER 199 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc26 B O LEU 200 B LEU 200 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc27 B O TYR 225 B TYR 225 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc28 B OD2 ASP 267 B ASP 267 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc29 J O4 B3N . B B3N 390 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc30 J O2 B3N . B B3N 390 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc31 L O HOH . B HOH 393 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc32 L O HOH . B HOH 395 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
#
_chem_comp.formula           'C16 H25 N3 O3' 
_chem_comp.formula_weight    307.388 
_chem_comp.id                B3N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     M344 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 C13 B3N doub 70 n n 
C13 C14 B3N sing 71 n n 
C13 N12 B3N sing 72 n n 
C14 C15 B3N doub 73 n y 
C14 C19 B3N sing 74 n y 
C15 C16 B3N sing 75 n y 
C15 H15 B3N sing 76 n n 
C16 C17 B3N doub 77 n y 
C16 H16 B3N sing 78 n n 
C17 N20 B3N sing 79 n n 
C17 C18 B3N sing 80 n y 
N20 C22 B3N sing 81 n n 
N20 C21 B3N sing 82 n n 
C22 H221 B3N sing 83 n n 
C22 H222 B3N sing 84 n n 
C22 H223 B3N sing 85 n n 
C21 H211 B3N sing 86 n n 
C21 H212 B3N sing 87 n n 
C21 H213 B3N sing 88 n n 
C18 C19 B3N doub 89 n y 
C18 H18 B3N sing 90 n n 
C19 H19 B3N sing 91 n n 
N12 C10 B3N sing 92 n n 
N12 H12 B3N sing 93 n n 
C10 C9 B3N sing 94 n n 
C10 H101 B3N sing 95 n n 
C10 H102 B3N sing 96 n n 
C9 C8 B3N sing 97 n n 
C9 H91 B3N sing 98 n n 
C9 H92 B3N sing 99 n n 
C8 C7 B3N sing 100 n n 
C8 H81 B3N sing 101 n n 
C8 H82 B3N sing 102 n n 
C7 C6 B3N sing 103 n n 
C7 H71 B3N sing 104 n n 
C7 H72 B3N sing 105 n n 
C6 C5 B3N sing 106 n n 
C6 H61 B3N sing 107 n n 
C6 H62 B3N sing 108 n n 
C5 C1 B3N sing 109 n n 
C5 H51 B3N sing 110 n n 
C5 H52 B3N sing 111 n n 
C1 O2 B3N doub 112 n n 
C1 N3 B3N sing 113 n n 
N3 O4 B3N sing 114 n n 
N3 H24 B3N sing 115 n n 
O4 H25 B3N sing 116 n n 
#
_atom_sites.entry_id                     3MZ3 
_atom_sites.fract_transf_matrix[1][1]    0.017977 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001279 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011609 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO A 1 400 400 CO CO . 
D 3 K A 1 402 402 K K . 
E 3 K A 1 404 404 K K . 
F 4 B3N A 1 390 381 B3N B3N . 
G 2 CO B 1 401 401 CO CO . 
H 3 K B 1 403 403 K K . 
I 3 K B 1 405 405 K K . 
J 4 B3N B 1 390 382 B3N B3N . 
K 5 HOH A 1 391 1 HOH HOH . 
K 5 HOH A 2 392 3 HOH HOH . 
K 5 HOH A 3 393 6 HOH HOH . 
K 5 HOH A 4 394 7 HOH HOH . 
K 5 HOH A 5 395 9 HOH HOH . 
K 5 HOH A 6 396 14 HOH HOH . 
K 5 HOH A 7 397 18 HOH HOH . 
K 5 HOH A 8 398 19 HOH HOH . 
K 5 HOH A 9 399 22 HOH HOH . 
K 5 HOH A 10 401 23 HOH HOH . 
K 5 HOH A 11 403 28 HOH HOH . 
K 5 HOH A 12 405 31 HOH HOH . 
K 5 HOH A 13 406 32 HOH HOH . 
K 5 HOH A 14 407 34 HOH HOH . 
K 5 HOH A 15 408 35 HOH HOH . 
L 5 HOH B 1 391 2 HOH HOH . 
L 5 HOH B 2 392 4 HOH HOH . 
L 5 HOH B 3 393 5 HOH HOH . 
L 5 HOH B 4 394 8 HOH HOH . 
L 5 HOH B 5 395 10 HOH HOH . 
L 5 HOH B 6 396 11 HOH HOH . 
L 5 HOH B 7 397 12 HOH HOH . 
L 5 HOH B 8 398 13 HOH HOH . 
L 5 HOH B 9 399 15 HOH HOH . 
L 5 HOH B 10 400 16 HOH HOH . 
L 5 HOH B 11 402 17 HOH HOH . 
L 5 HOH B 12 404 20 HOH HOH . 
L 5 HOH B 13 406 21 HOH HOH . 
L 5 HOH B 14 407 24 HOH HOH . 
L 5 HOH B 15 408 25 HOH HOH . 
L 5 HOH B 16 409 26 HOH HOH . 
L 5 HOH B 17 410 27 HOH HOH . 
L 5 HOH B 18 411 29 HOH HOH . 
L 5 HOH B 19 412 30 HOH HOH . 
L 5 HOH B 20 413 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O23 B3N . . . J 4 19.292 32.426 27.135 1 87.01 ? O23 B3N 390 B 1 
HETATM 2 C C13 B3N . . . J 4 20.309 31.69 27.329 1 88.91 ? C13 B3N 390 B 1 
HETATM 3 C C14 B3N . . . J 4 21.056 31.198 26.125 1 91.37 ? C14 B3N 390 B 1 
HETATM 4 C C15 B3N . . . J 4 22.496 30.975 26.135 1 93.19 ? C15 B3N 390 B 1 
HETATM 5 C C16 B3N . . . J 4 23.136 30.504 24.915 1 94.87 ? C16 B3N 390 B 1 
HETATM 6 C C17 B3N . . . J 4 22.332 30.251 23.674 1 95.71 ? C17 B3N 390 B 1 
HETATM 7 N N20 B3N . . . J 4 22.9 29.781 22.433 1 97.26 ? N20 B3N 390 B 1 
HETATM 8 C C22 B3N . . . J 4 24.328 29.502 22.257 1 98.34 ? C22 B3N 390 B 1 
HETATM 9 C C21 B3N . . . J 4 22.045 29.55 21.247 1 97.01 ? C21 B3N 390 B 1 
HETATM 10 C C18 B3N . . . J 4 20.902 30.49 23.721 1 94.66 ? C18 B3N 390 B 1 
HETATM 11 C C19 B3N . . . J 4 20.284 30.951 24.914 1 93.28 ? C19 B3N 390 B 1 
HETATM 12 N N12 B3N . . . J 4 20.748 31.345 28.571 1 86.65 ? N12 B3N 390 B 1 
HETATM 13 C C10 B3N . . . J 4 20.13 31.761 29.847 1 84.29 ? C10 B3N 390 B 1 
HETATM 14 C C9 B3N . . . J 4 20.595 33.127 30.362 1 80.48 ? C9 B3N 390 B 1 
HETATM 15 C C8 B3N . . . J 4 19.972 34.259 29.548 1 76.93 ? C8 B3N 390 B 1 
HETATM 16 C C7 B3N . . . J 4 20.451 35.601 30.023 1 75.04 ? C7 B3N 390 B 1 
HETATM 17 C C6 B3N . . . J 4 19.888 36.767 29.257 1 73.84 ? C6 B3N 390 B 1 
HETATM 18 C C5 B3N . . . J 4 20.475 38.045 29.833 1 74.5 ? C5 B3N 390 B 1 
HETATM 19 C C1 B3N . . . J 4 19.66 39.287 29.475 1 74.86 ? C1 B3N 390 B 1 
HETATM 20 O O2 B3N . . . J 4 19.414 39.63 28.307 1 73.65 ? O2 B3N 390 B 1 
HETATM 21 N N3 B3N . . . J 4 19.226 39.999 30.5 1 75.5 ? N3 B3N 390 B 1 
HETATM 22 O O4 B3N . . . J 4 18.564 41.023 30.316 1 77.34 ? O4 B3N 390 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           22 
#