data_3MZ3
#
_model_server_result.job_id            d2nFb8gZVZSAcXspkhM3oA 
_model_server_result.datetime_utc      '2024-12-27 03:47:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3mz3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":400}' 
#
_entry.id    3MZ3 
#
_exptl.entry_id    3MZ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.933 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.07 
_cell.angle_gamma         90 
_cell.entry_id            3MZ3 
_cell.length_a            55.626 
_cell.length_b            86.143 
_cell.length_c            94.508 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3MZ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 176 A ASP 176 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc2 A O ASP 176 A ASP 176 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 A O ASP 178 A ASP 178 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc6 A O HIS 180 A HIS 180 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc7 A O PHE 189 A PHE 189 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc8 A O THR 192 A THR 192 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc9 A O VAL 195 A VAL 195 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc10 A OG SER 199 A SER 199 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? 
metalc ? metalc11 A O LEU 200 A LEU 200 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc12 A O TYR 225 A TYR 225 1_555 E K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
metalc ? metalc14 F O4 B3N . A B3N 390 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc15 F O2 B3N . A B3N 390 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc16 B OD1 ASP 176 B ASP 176 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
metalc ? metalc17 B O ASP 176 B ASP 176 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc18 B OD2 ASP 178 B ASP 178 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
metalc ? metalc19 B O ASP 178 B ASP 178 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc20 B ND1 HIS 180 B HIS 180 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc21 B O HIS 180 B HIS 180 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc22 B O PHE 189 B PHE 189 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc23 B O THR 192 B THR 192 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? 
metalc ? metalc24 B O VAL 195 B VAL 195 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc25 B OG SER 199 B SER 199 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc26 B O LEU 200 B LEU 200 1_555 H K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc27 B O TYR 225 B TYR 225 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc28 B OD2 ASP 267 B ASP 267 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc29 J O4 B3N . B B3N 390 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc30 J O2 B3N . B B3N 390 1_555 G CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc31 L O HOH . B HOH 393 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc32 L O HOH . B HOH 395 1_555 I K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
#
_chem_comp.formula           'Co 2' 
_chem_comp.formula_weight    58.933 
_chem_comp.id                CO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3MZ3 
_atom_sites.fract_transf_matrix[1][1]    0.017977 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001279 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011609 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010608 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO A 1 400 400 CO CO . 
D 3 K A 1 402 402 K K . 
E 3 K A 1 404 404 K K . 
F 4 B3N A 1 390 381 B3N B3N . 
G 2 CO B 1 401 401 CO CO . 
H 3 K B 1 403 403 K K . 
I 3 K B 1 405 405 K K . 
J 4 B3N B 1 390 382 B3N B3N . 
K 5 HOH A 1 391 1 HOH HOH . 
K 5 HOH A 2 392 3 HOH HOH . 
K 5 HOH A 3 393 6 HOH HOH . 
K 5 HOH A 4 394 7 HOH HOH . 
K 5 HOH A 5 395 9 HOH HOH . 
K 5 HOH A 6 396 14 HOH HOH . 
K 5 HOH A 7 397 18 HOH HOH . 
K 5 HOH A 8 398 19 HOH HOH . 
K 5 HOH A 9 399 22 HOH HOH . 
K 5 HOH A 10 401 23 HOH HOH . 
K 5 HOH A 11 403 28 HOH HOH . 
K 5 HOH A 12 405 31 HOH HOH . 
K 5 HOH A 13 406 32 HOH HOH . 
K 5 HOH A 14 407 34 HOH HOH . 
K 5 HOH A 15 408 35 HOH HOH . 
L 5 HOH B 1 391 2 HOH HOH . 
L 5 HOH B 2 392 4 HOH HOH . 
L 5 HOH B 3 393 5 HOH HOH . 
L 5 HOH B 4 394 8 HOH HOH . 
L 5 HOH B 5 395 10 HOH HOH . 
L 5 HOH B 6 396 11 HOH HOH . 
L 5 HOH B 7 397 12 HOH HOH . 
L 5 HOH B 8 398 13 HOH HOH . 
L 5 HOH B 9 399 15 HOH HOH . 
L 5 HOH B 10 400 16 HOH HOH . 
L 5 HOH B 11 402 17 HOH HOH . 
L 5 HOH B 12 404 20 HOH HOH . 
L 5 HOH B 13 406 21 HOH HOH . 
L 5 HOH B 14 407 24 HOH HOH . 
L 5 HOH B 15 408 25 HOH HOH . 
L 5 HOH B 16 409 26 HOH HOH . 
L 5 HOH B 17 410 27 HOH HOH . 
L 5 HOH B 18 411 29 HOH HOH . 
L 5 HOH B 19 412 30 HOH HOH . 
L 5 HOH B 20 413 33 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CO 
_atom_site.label_atom_id         CO 
_atom_site.label_comp_id         CO 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               18.707 
_atom_site.Cartn_y               23.711 
_atom_site.Cartn_z               17.885 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        74.25 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CO 
_atom_site.auth_comp_id          CO 
_atom_site.auth_seq_id           400 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#