data_3MZ6 # _model_server_result.job_id 8WnnTfjPJDH5-vW9oC9Lig _model_server_result.datetime_utc '2024-11-21 16:46:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 3MZ6 # _exptl.entry_id 3MZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.388 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MZ6 _cell.length_a 91.616 _cell.length_b 87.561 _cell.length_c 52.488 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 176 A ASP 176 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc2 A O ASP 176 A ASP 176 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 B FE FE2 . A FE2 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 B FE FE2 . A FE2 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc12 A O TYR 225 A TYR 225 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 B FE FE2 . A FE2 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc14 F O HOH . A HOH 390 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc15 F O HOH . A HOH 391 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc16 F O HOH . A HOH 397 1_555 B FE FE2 . A FE2 400 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc17 B FE FE2 . A FE2 400 1_555 F O HOH . A HOH 545 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.128 ? metalc ? metalc18 B FE FE2 . A FE2 400 1_555 E O4 B3N . A B3N 701 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.906 ? metalc ? metalc19 B FE FE2 . A FE2 400 1_555 E O2 B3N . A B3N 701 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C16 H25 N3 O3' _chem_comp.formula_weight 307.388 _chem_comp.id B3N _chem_comp.mon_nstd_flag . _chem_comp.name 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms M344 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C13 B3N doub 70 n n C13 C14 B3N sing 71 n n C13 N12 B3N sing 72 n n C14 C15 B3N doub 73 n y C14 C19 B3N sing 74 n y C15 C16 B3N sing 75 n y C15 H15 B3N sing 76 n n C16 C17 B3N doub 77 n y C16 H16 B3N sing 78 n n C17 N20 B3N sing 79 n n C17 C18 B3N sing 80 n y N20 C22 B3N sing 81 n n N20 C21 B3N sing 82 n n C22 H221 B3N sing 83 n n C22 H222 B3N sing 84 n n C22 H223 B3N sing 85 n n C21 H211 B3N sing 86 n n C21 H212 B3N sing 87 n n C21 H213 B3N sing 88 n n C18 C19 B3N doub 89 n y C18 H18 B3N sing 90 n n C19 H19 B3N sing 91 n n N12 C10 B3N sing 92 n n N12 H12 B3N sing 93 n n C10 C9 B3N sing 94 n n C10 H101 B3N sing 95 n n C10 H102 B3N sing 96 n n C9 C8 B3N sing 97 n n C9 H91 B3N sing 98 n n C9 H92 B3N sing 99 n n C8 C7 B3N sing 100 n n C8 H81 B3N sing 101 n n C8 H82 B3N sing 102 n n C7 C6 B3N sing 103 n n C7 H71 B3N sing 104 n n C7 H72 B3N sing 105 n n C6 C5 B3N sing 106 n n C6 H61 B3N sing 107 n n C6 H62 B3N sing 108 n n C5 C1 B3N sing 109 n n C5 H51 B3N sing 110 n n C5 H52 B3N sing 111 n n C1 O2 B3N doub 112 n n C1 N3 B3N sing 113 n n N3 O4 B3N sing 114 n n N3 H24 B3N sing 115 n n O4 H25 B3N sing 116 n n # _atom_sites.entry_id 3MZ6 _atom_sites.fract_transf_matrix[1][1] 0.010915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 400 400 FE2 FE2 . C 3 K A 1 401 401 K K . D 3 K A 1 402 402 K K . E 4 B3N A 1 701 701 B3N B3N . F 5 HOH A 1 390 390 HOH HOH . F 5 HOH A 2 391 391 HOH HOH . F 5 HOH A 3 392 392 HOH HOH . F 5 HOH A 4 393 393 HOH HOH . F 5 HOH A 5 394 394 HOH HOH . F 5 HOH A 6 395 395 HOH HOH . F 5 HOH A 7 396 396 HOH HOH . F 5 HOH A 8 397 397 HOH HOH . F 5 HOH A 9 398 398 HOH HOH . F 5 HOH A 10 399 399 HOH HOH . F 5 HOH A 11 403 403 HOH HOH . F 5 HOH A 12 404 404 HOH HOH . F 5 HOH A 13 405 405 HOH HOH . F 5 HOH A 14 406 406 HOH HOH . F 5 HOH A 15 407 407 HOH HOH . F 5 HOH A 16 408 408 HOH HOH . F 5 HOH A 17 409 409 HOH HOH . F 5 HOH A 18 410 410 HOH HOH . F 5 HOH A 19 411 411 HOH HOH . F 5 HOH A 20 412 412 HOH HOH . F 5 HOH A 21 413 413 HOH HOH . F 5 HOH A 22 414 414 HOH HOH . F 5 HOH A 23 415 415 HOH HOH . F 5 HOH A 24 416 416 HOH HOH . F 5 HOH A 25 417 417 HOH HOH . F 5 HOH A 26 418 418 HOH HOH . F 5 HOH A 27 419 419 HOH HOH . F 5 HOH A 28 420 420 HOH HOH . F 5 HOH A 29 421 421 HOH HOH . F 5 HOH A 30 422 422 HOH HOH . F 5 HOH A 31 423 423 HOH HOH . F 5 HOH A 32 424 424 HOH HOH . F 5 HOH A 33 425 425 HOH HOH . F 5 HOH A 34 426 426 HOH HOH . F 5 HOH A 35 427 427 HOH HOH . F 5 HOH A 36 428 428 HOH HOH . F 5 HOH A 37 429 429 HOH HOH . F 5 HOH A 38 430 430 HOH HOH . F 5 HOH A 39 431 431 HOH HOH . F 5 HOH A 40 432 432 HOH HOH . F 5 HOH A 41 433 433 HOH HOH . F 5 HOH A 42 434 434 HOH HOH . F 5 HOH A 43 435 435 HOH HOH . F 5 HOH A 44 436 436 HOH HOH . F 5 HOH A 45 437 437 HOH HOH . F 5 HOH A 46 438 438 HOH HOH . F 5 HOH A 47 439 439 HOH HOH . F 5 HOH A 48 440 440 HOH HOH . F 5 HOH A 49 441 441 HOH HOH . F 5 HOH A 50 442 442 HOH HOH . F 5 HOH A 51 443 443 HOH HOH . F 5 HOH A 52 444 444 HOH HOH . F 5 HOH A 53 445 445 HOH HOH . F 5 HOH A 54 446 446 HOH HOH . F 5 HOH A 55 447 447 HOH HOH . F 5 HOH A 56 448 448 HOH HOH . F 5 HOH A 57 449 449 HOH HOH . F 5 HOH A 58 450 450 HOH HOH . F 5 HOH A 59 451 451 HOH HOH . F 5 HOH A 60 452 452 HOH HOH . F 5 HOH A 61 453 453 HOH HOH . F 5 HOH A 62 454 454 HOH HOH . F 5 HOH A 63 455 455 HOH HOH . F 5 HOH A 64 456 456 HOH HOH . F 5 HOH A 65 457 457 HOH HOH . F 5 HOH A 66 458 458 HOH HOH . F 5 HOH A 67 459 459 HOH HOH . F 5 HOH A 68 460 460 HOH HOH . F 5 HOH A 69 461 461 HOH HOH . F 5 HOH A 70 462 462 HOH HOH . F 5 HOH A 71 463 463 HOH HOH . F 5 HOH A 72 464 464 HOH HOH . F 5 HOH A 73 465 465 HOH HOH . F 5 HOH A 74 466 466 HOH HOH . F 5 HOH A 75 467 467 HOH HOH . F 5 HOH A 76 468 468 HOH HOH . F 5 HOH A 77 469 469 HOH HOH . F 5 HOH A 78 470 470 HOH HOH . F 5 HOH A 79 471 471 HOH HOH . F 5 HOH A 80 472 472 HOH HOH . F 5 HOH A 81 473 473 HOH HOH . F 5 HOH A 82 474 474 HOH HOH . F 5 HOH A 83 475 475 HOH HOH . F 5 HOH A 84 476 476 HOH HOH . F 5 HOH A 85 477 477 HOH HOH . F 5 HOH A 86 478 478 HOH HOH . F 5 HOH A 87 479 479 HOH HOH . F 5 HOH A 88 480 480 HOH HOH . F 5 HOH A 89 481 481 HOH HOH . F 5 HOH A 90 482 482 HOH HOH . F 5 HOH A 91 483 483 HOH HOH . F 5 HOH A 92 484 484 HOH HOH . F 5 HOH A 93 485 485 HOH HOH . F 5 HOH A 94 486 486 HOH HOH . F 5 HOH A 95 487 487 HOH HOH . F 5 HOH A 96 488 488 HOH HOH . F 5 HOH A 97 489 489 HOH HOH . F 5 HOH A 98 490 490 HOH HOH . F 5 HOH A 99 491 491 HOH HOH . F 5 HOH A 100 492 492 HOH HOH . F 5 HOH A 101 493 493 HOH HOH . F 5 HOH A 102 494 494 HOH HOH . F 5 HOH A 103 495 495 HOH HOH . F 5 HOH A 104 496 496 HOH HOH . F 5 HOH A 105 497 497 HOH HOH . F 5 HOH A 106 498 498 HOH HOH . F 5 HOH A 107 499 499 HOH HOH . F 5 HOH A 108 500 500 HOH HOH . F 5 HOH A 109 501 501 HOH HOH . F 5 HOH A 110 502 502 HOH HOH . F 5 HOH A 111 503 503 HOH HOH . F 5 HOH A 112 504 504 HOH HOH . F 5 HOH A 113 505 505 HOH HOH . F 5 HOH A 114 506 506 HOH HOH . F 5 HOH A 115 507 507 HOH HOH . F 5 HOH A 116 508 508 HOH HOH . F 5 HOH A 117 509 509 HOH HOH . F 5 HOH A 118 510 510 HOH HOH . F 5 HOH A 119 511 511 HOH HOH . F 5 HOH A 120 512 512 HOH HOH . F 5 HOH A 121 513 513 HOH HOH . F 5 HOH A 122 514 514 HOH HOH . F 5 HOH A 123 515 515 HOH HOH . F 5 HOH A 124 516 516 HOH HOH . F 5 HOH A 125 517 517 HOH HOH . F 5 HOH A 126 518 518 HOH HOH . F 5 HOH A 127 519 519 HOH HOH . F 5 HOH A 128 520 520 HOH HOH . F 5 HOH A 129 521 521 HOH HOH . F 5 HOH A 130 522 522 HOH HOH . F 5 HOH A 131 523 523 HOH HOH . F 5 HOH A 132 524 524 HOH HOH . F 5 HOH A 133 525 525 HOH HOH . F 5 HOH A 134 526 526 HOH HOH . F 5 HOH A 135 527 527 HOH HOH . F 5 HOH A 136 528 528 HOH HOH . F 5 HOH A 137 529 529 HOH HOH . F 5 HOH A 138 530 530 HOH HOH . F 5 HOH A 139 531 531 HOH HOH . F 5 HOH A 140 532 532 HOH HOH . F 5 HOH A 141 533 533 HOH HOH . F 5 HOH A 142 534 534 HOH HOH . F 5 HOH A 143 535 535 HOH HOH . F 5 HOH A 144 536 536 HOH HOH . F 5 HOH A 145 537 537 HOH HOH . F 5 HOH A 146 538 538 HOH HOH . F 5 HOH A 147 539 539 HOH HOH . F 5 HOH A 148 540 540 HOH HOH . F 5 HOH A 149 541 541 HOH HOH . F 5 HOH A 150 542 542 HOH HOH . F 5 HOH A 151 543 543 HOH HOH . F 5 HOH A 152 544 544 HOH HOH . F 5 HOH A 153 545 545 HOH HOH . F 5 HOH A 154 546 546 HOH HOH . F 5 HOH A 155 547 547 HOH HOH . F 5 HOH A 156 548 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 B3N . A . E 4 -0.542 43.61 0.586 0.5 45.15 ? O23 B3N 701 A 1 HETATM 2 C C13 B3N . A . E 4 -0.481 43.926 1.531 0.5 42.25 ? C13 B3N 701 A 1 HETATM 3 C C14 B3N . A . E 4 -0.71 45.425 1.812 0.5 41.5 ? C14 B3N 701 A 1 HETATM 4 C C15 B3N . A . E 4 0.078 46.153 2.794 0.5 39.78 ? C15 B3N 701 A 1 HETATM 5 C C16 B3N . A . E 4 -0.154 47.562 3.05 0.5 38.67 ? C16 B3N 701 A 1 HETATM 6 C C17 B3N . A . E 4 -1.188 48.295 2.329 0.5 37.73 ? C17 B3N 701 A 1 HETATM 7 N N20 B3N . A . E 4 -1.458 49.709 2.566 0.5 37.7 ? N20 B3N 701 A 1 HETATM 8 C C22 B3N . A . E 4 -2.569 50.401 1.9 0.5 36.23 ? C22 B3N 701 A 1 HETATM 9 C C21 B3N . A . E 4 -0.696 50.52 3.516 0.5 37.71 ? C21 B3N 701 A 1 HETATM 10 C C18 B3N . A . E 4 -1.993 47.53 1.346 0.5 38.43 ? C18 B3N 701 A 1 HETATM 11 C C19 B3N . A . E 4 -1.737 46.151 1.09 0.5 39.56 ? C19 B3N 701 A 1 HETATM 12 N N12 B3N . A . E 4 -0.216 43.086 2.573 0.5 43 ? N12 B3N 701 A 1 HETATM 13 C C10 B3N . A . E 4 0.046 41.623 2.586 0.5 40.3 ? C10 B3N 701 A 1 HETATM 14 C C9 B3N . A . E 4 0.631 41.009 1.298 0.5 38.72 ? C9 B3N 701 A 1 HETATM 15 C C8 B3N . A . E 4 1.724 39.973 1.623 0.5 33.49 ? C8 B3N 701 A 1 HETATM 16 C C7 B3N . A . E 4 1.201 38.671 2.195 0.5 31.37 ? C7 B3N 701 A 1 HETATM 17 C C6 B3N . A . E 4 1.744 37.468 1.429 0.5 28.82 ? C6 B3N 701 A 1 HETATM 18 C C5 B3N . A . E 4 2.397 36.509 2.416 0.5 25.93 ? C5 B3N 701 A 1 HETATM 19 C C1 B3N . A . E 4 1.874 35.069 2.338 0.5 23.8 ? C1 B3N 701 A 1 HETATM 20 O O2 B3N . A . E 4 0.768 34.776 2.796 0.5 22.08 ? O2 B3N 701 A 1 HETATM 21 N N3 B3N . A . E 4 2.606 34.127 1.768 0.5 26.31 ? N3 B3N 701 A 1 HETATM 22 O O4 B3N . A . E 4 2.154 32.979 1.712 0.5 28.72 ? O4 B3N 701 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 22 #