data_3MZ7 # _model_server_result.job_id yzJbRaEschpkfLO4L3UNng _model_server_result.datetime_utc '2024-11-24 00:07:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":706}' # _entry.id 3MZ7 # _exptl.entry_id 3MZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MZ7 _cell.length_a 91.799 _cell.length_b 88.431 _cell.length_c 52.503 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 176 A ASP 176 1_555 C K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc2 A O ASP 176 A ASP 176 1_555 C K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 B CO CO . A CO 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 C K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 B CO CO . A CO 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 C K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 D K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 D K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 D K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 C K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 C K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc12 A O TYR 225 A TYR 225 1_555 D K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 B CO CO . A CO 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc14 B CO CO . A CO 390 1_555 G O HOH . A HOH 537 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.057 ? metalc ? metalc15 B CO CO . A CO 390 1_555 G O HOH . A HOH 538 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.739 ? metalc ? metalc16 B CO CO . A CO 390 1_555 E O4 B3N . A B3N 701 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.817 ? metalc ? metalc17 B CO CO . A CO 390 1_555 E O2 B3N . A B3N 701 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.433 ? metalc ? metalc18 B CO CO . A CO 390 1_555 E N3 B3N . A B3N 701 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.528 ? metalc ? metalc19 B CO CO . A CO 390 1_555 E C1 B3N . A B3N 701 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.789 ? metalc ? metalc20 D K K . A K 392 1_555 G O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc21 D K K . A K 392 1_555 G O HOH . A HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 176 n n C1 C2 GOL sing 177 n n C1 H11 GOL sing 178 n n C1 H12 GOL sing 179 n n O1 HO1 GOL sing 180 n n C2 O2 GOL sing 181 n n C2 C3 GOL sing 182 n n C2 H2 GOL sing 183 n n O2 HO2 GOL sing 184 n n C3 O3 GOL sing 185 n n C3 H31 GOL sing 186 n n C3 H32 GOL sing 187 n n O3 HO3 GOL sing 188 n n # _atom_sites.entry_id 3MZ7 _atom_sites.fract_transf_matrix[1][1] 0.010893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 390 1 CO CO . C 3 K A 1 391 1 K K . D 3 K A 1 392 2 K K . E 4 B3N A 1 701 701 B3N B3N . F 5 GOL A 1 706 706 GOL GOL . G 6 HOH A 1 393 1 HOH HOH . G 6 HOH A 2 394 2 HOH HOH . G 6 HOH A 3 395 3 HOH HOH . G 6 HOH A 4 396 4 HOH HOH . G 6 HOH A 5 397 5 HOH HOH . G 6 HOH A 6 398 6 HOH HOH . G 6 HOH A 7 399 7 HOH HOH . G 6 HOH A 8 400 8 HOH HOH . G 6 HOH A 9 401 9 HOH HOH . G 6 HOH A 10 402 10 HOH HOH . G 6 HOH A 11 403 11 HOH HOH . G 6 HOH A 12 404 12 HOH HOH . G 6 HOH A 13 405 13 HOH HOH . G 6 HOH A 14 406 14 HOH HOH . G 6 HOH A 15 407 15 HOH HOH . G 6 HOH A 16 408 16 HOH HOH . G 6 HOH A 17 409 17 HOH HOH . G 6 HOH A 18 410 18 HOH HOH . G 6 HOH A 19 411 19 HOH HOH . G 6 HOH A 20 412 20 HOH HOH . G 6 HOH A 21 413 21 HOH HOH . G 6 HOH A 22 414 22 HOH HOH . G 6 HOH A 23 415 23 HOH HOH . G 6 HOH A 24 416 24 HOH HOH . G 6 HOH A 25 417 25 HOH HOH . G 6 HOH A 26 418 26 HOH HOH . G 6 HOH A 27 419 27 HOH HOH . G 6 HOH A 28 420 28 HOH HOH . G 6 HOH A 29 421 29 HOH HOH . G 6 HOH A 30 422 30 HOH HOH . G 6 HOH A 31 423 31 HOH HOH . G 6 HOH A 32 424 32 HOH HOH . G 6 HOH A 33 425 33 HOH HOH . G 6 HOH A 34 426 34 HOH HOH . G 6 HOH A 35 427 35 HOH HOH . G 6 HOH A 36 428 37 HOH HOH . G 6 HOH A 37 429 38 HOH HOH . G 6 HOH A 38 430 39 HOH HOH . G 6 HOH A 39 431 40 HOH HOH . G 6 HOH A 40 432 41 HOH HOH . G 6 HOH A 41 433 42 HOH HOH . G 6 HOH A 42 434 43 HOH HOH . G 6 HOH A 43 435 44 HOH HOH . G 6 HOH A 44 436 45 HOH HOH . G 6 HOH A 45 437 46 HOH HOH . G 6 HOH A 46 438 47 HOH HOH . G 6 HOH A 47 439 48 HOH HOH . G 6 HOH A 48 440 49 HOH HOH . G 6 HOH A 49 441 50 HOH HOH . G 6 HOH A 50 442 51 HOH HOH . G 6 HOH A 51 443 52 HOH HOH . G 6 HOH A 52 444 53 HOH HOH . G 6 HOH A 53 445 54 HOH HOH . G 6 HOH A 54 446 55 HOH HOH . G 6 HOH A 55 447 56 HOH HOH . G 6 HOH A 56 448 57 HOH HOH . G 6 HOH A 57 449 58 HOH HOH . G 6 HOH A 58 450 59 HOH HOH . G 6 HOH A 59 451 60 HOH HOH . G 6 HOH A 60 452 61 HOH HOH . G 6 HOH A 61 453 62 HOH HOH . G 6 HOH A 62 454 64 HOH HOH . G 6 HOH A 63 455 65 HOH HOH . G 6 HOH A 64 456 66 HOH HOH . G 6 HOH A 65 457 67 HOH HOH . G 6 HOH A 66 458 68 HOH HOH . G 6 HOH A 67 459 69 HOH HOH . G 6 HOH A 68 460 70 HOH HOH . G 6 HOH A 69 461 71 HOH HOH . G 6 HOH A 70 462 72 HOH HOH . G 6 HOH A 71 463 73 HOH HOH . G 6 HOH A 72 464 74 HOH HOH . G 6 HOH A 73 465 75 HOH HOH . G 6 HOH A 74 466 76 HOH HOH . G 6 HOH A 75 467 77 HOH HOH . G 6 HOH A 76 468 78 HOH HOH . G 6 HOH A 77 469 79 HOH HOH . G 6 HOH A 78 470 80 HOH HOH . G 6 HOH A 79 471 81 HOH HOH . G 6 HOH A 80 472 82 HOH HOH . G 6 HOH A 81 473 83 HOH HOH . G 6 HOH A 82 474 84 HOH HOH . G 6 HOH A 83 475 85 HOH HOH . G 6 HOH A 84 476 86 HOH HOH . G 6 HOH A 85 477 87 HOH HOH . G 6 HOH A 86 478 89 HOH HOH . G 6 HOH A 87 479 90 HOH HOH . G 6 HOH A 88 480 91 HOH HOH . G 6 HOH A 89 481 92 HOH HOH . G 6 HOH A 90 482 93 HOH HOH . G 6 HOH A 91 483 94 HOH HOH . G 6 HOH A 92 484 95 HOH HOH . G 6 HOH A 93 485 96 HOH HOH . G 6 HOH A 94 486 97 HOH HOH . G 6 HOH A 95 487 98 HOH HOH . G 6 HOH A 96 488 99 HOH HOH . G 6 HOH A 97 489 100 HOH HOH . G 6 HOH A 98 490 101 HOH HOH . G 6 HOH A 99 491 102 HOH HOH . G 6 HOH A 100 492 103 HOH HOH . G 6 HOH A 101 493 104 HOH HOH . G 6 HOH A 102 494 105 HOH HOH . G 6 HOH A 103 495 106 HOH HOH . G 6 HOH A 104 496 107 HOH HOH . G 6 HOH A 105 497 108 HOH HOH . G 6 HOH A 106 498 109 HOH HOH . G 6 HOH A 107 499 110 HOH HOH . G 6 HOH A 108 500 111 HOH HOH . G 6 HOH A 109 501 112 HOH HOH . G 6 HOH A 110 502 113 HOH HOH . G 6 HOH A 111 503 114 HOH HOH . G 6 HOH A 112 504 115 HOH HOH . G 6 HOH A 113 505 116 HOH HOH . G 6 HOH A 114 506 117 HOH HOH . G 6 HOH A 115 507 118 HOH HOH . G 6 HOH A 116 508 119 HOH HOH . G 6 HOH A 117 509 120 HOH HOH . G 6 HOH A 118 510 121 HOH HOH . G 6 HOH A 119 511 122 HOH HOH . G 6 HOH A 120 512 123 HOH HOH . G 6 HOH A 121 513 124 HOH HOH . G 6 HOH A 122 514 125 HOH HOH . G 6 HOH A 123 515 126 HOH HOH . G 6 HOH A 124 516 127 HOH HOH . G 6 HOH A 125 517 128 HOH HOH . G 6 HOH A 126 518 129 HOH HOH . G 6 HOH A 127 519 130 HOH HOH . G 6 HOH A 128 520 131 HOH HOH . G 6 HOH A 129 521 132 HOH HOH . G 6 HOH A 130 522 133 HOH HOH . G 6 HOH A 131 523 134 HOH HOH . G 6 HOH A 132 524 135 HOH HOH . G 6 HOH A 133 525 136 HOH HOH . G 6 HOH A 134 526 137 HOH HOH . G 6 HOH A 135 527 138 HOH HOH . G 6 HOH A 136 528 139 HOH HOH . G 6 HOH A 137 529 140 HOH HOH . G 6 HOH A 138 530 141 HOH HOH . G 6 HOH A 139 531 142 HOH HOH . G 6 HOH A 140 532 143 HOH HOH . G 6 HOH A 141 533 144 HOH HOH . G 6 HOH A 142 534 145 HOH HOH . G 6 HOH A 143 535 146 HOH HOH . G 6 HOH A 144 536 147 HOH HOH . G 6 HOH A 145 537 150 HOH HOH . G 6 HOH A 146 538 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 4.45 32.826 6.719 0.8 37.66 ? C1 GOL 706 A 1 HETATM 2 O O1 GOL . A . F 5 4.682 31.53 7.129 0.25 37.55 ? O1 GOL 706 A 1 HETATM 3 O O1 GOL . B . F 5 3.586 33.624 7.452 0.25 31.99 ? O1 GOL 706 A 1 HETATM 4 O O1 GOL . C . F 5 5.487 33.042 7.608 0.25 33.26 ? O1 GOL 706 A 1 HETATM 5 C C2 GOL . . . F 5 4.712 33.206 5.296 0.8 39.74 ? C2 GOL 706 A 1 HETATM 6 O O2 GOL . . . F 5 4.485 32.255 4.331 0.8 41.8 ? O2 GOL 706 A 1 HETATM 7 C C3 GOL . . . F 5 4.233 34.56 4.902 0.8 45.48 ? C3 GOL 706 A 1 HETATM 8 O O3 GOL . C . F 5 3.764 34.746 3.611 0.25 43.84 ? O3 GOL 706 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #