data_3MZD # _model_server_result.job_id FrCKaI2YcxD4aoRPC-8dqA _model_server_result.datetime_utc '2024-10-09 23:22:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":365}' # _entry.id 3MZD # _exptl.entry_id 3MZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.93 _cell.angle_gamma 90 _cell.entry_id 3MZD _cell.length_a 109.84 _cell.length_b 50.23 _cell.length_c 84.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 44 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id CXV _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CXV _struct_conn.ptnr2_auth_seq_id 364 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.377 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 3MZD _atom_sites.fract_transf_matrix[1][1] 0.009104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005241 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CXV A 1 364 1 CXV CXV . C 3 GOL A 1 365 1 GOL GOL . D 4 HOH A 1 366 1 HOH HOH . D 4 HOH A 2 367 2 HOH HOH . D 4 HOH A 3 368 3 HOH HOH . D 4 HOH A 4 369 4 HOH HOH . D 4 HOH A 5 370 6 HOH HOH . D 4 HOH A 6 371 7 HOH HOH . D 4 HOH A 7 372 8 HOH HOH . D 4 HOH A 8 373 9 HOH HOH . D 4 HOH A 9 374 10 HOH HOH . D 4 HOH A 10 375 11 HOH HOH . D 4 HOH A 11 376 12 HOH HOH . D 4 HOH A 12 377 13 HOH HOH . D 4 HOH A 13 378 14 HOH HOH . D 4 HOH A 14 379 15 HOH HOH . D 4 HOH A 15 380 16 HOH HOH . D 4 HOH A 16 381 17 HOH HOH . D 4 HOH A 17 382 18 HOH HOH . D 4 HOH A 18 383 20 HOH HOH . D 4 HOH A 19 384 21 HOH HOH . D 4 HOH A 20 385 24 HOH HOH . D 4 HOH A 21 386 25 HOH HOH . D 4 HOH A 22 387 26 HOH HOH . D 4 HOH A 23 388 28 HOH HOH . D 4 HOH A 24 389 29 HOH HOH . D 4 HOH A 25 390 30 HOH HOH . D 4 HOH A 26 391 32 HOH HOH . D 4 HOH A 27 392 33 HOH HOH . D 4 HOH A 28 393 34 HOH HOH . D 4 HOH A 29 394 36 HOH HOH . D 4 HOH A 30 395 37 HOH HOH . D 4 HOH A 31 396 38 HOH HOH . D 4 HOH A 32 397 39 HOH HOH . D 4 HOH A 33 398 40 HOH HOH . D 4 HOH A 34 399 41 HOH HOH . D 4 HOH A 35 400 42 HOH HOH . D 4 HOH A 36 401 43 HOH HOH . D 4 HOH A 37 402 44 HOH HOH . D 4 HOH A 38 403 45 HOH HOH . D 4 HOH A 39 404 46 HOH HOH . D 4 HOH A 40 405 48 HOH HOH . D 4 HOH A 41 406 50 HOH HOH . D 4 HOH A 42 407 51 HOH HOH . D 4 HOH A 43 408 52 HOH HOH . D 4 HOH A 44 409 53 HOH HOH . D 4 HOH A 45 410 54 HOH HOH . D 4 HOH A 46 411 55 HOH HOH . D 4 HOH A 47 412 56 HOH HOH . D 4 HOH A 48 413 57 HOH HOH . D 4 HOH A 49 414 59 HOH HOH . D 4 HOH A 50 415 60 HOH HOH . D 4 HOH A 51 416 62 HOH HOH . D 4 HOH A 52 417 63 HOH HOH . D 4 HOH A 53 418 64 HOH HOH . D 4 HOH A 54 419 65 HOH HOH . D 4 HOH A 55 420 66 HOH HOH . D 4 HOH A 56 421 67 HOH HOH . D 4 HOH A 57 422 68 HOH HOH . D 4 HOH A 58 423 69 HOH HOH . D 4 HOH A 59 424 71 HOH HOH . D 4 HOH A 60 425 73 HOH HOH . D 4 HOH A 61 426 74 HOH HOH . D 4 HOH A 62 427 75 HOH HOH . D 4 HOH A 63 428 77 HOH HOH . D 4 HOH A 64 429 78 HOH HOH . D 4 HOH A 65 430 79 HOH HOH . D 4 HOH A 66 431 80 HOH HOH . D 4 HOH A 67 432 81 HOH HOH . D 4 HOH A 68 433 82 HOH HOH . D 4 HOH A 69 434 83 HOH HOH . D 4 HOH A 70 435 85 HOH HOH . D 4 HOH A 71 436 86 HOH HOH . D 4 HOH A 72 437 90 HOH HOH . D 4 HOH A 73 438 91 HOH HOH . D 4 HOH A 74 439 92 HOH HOH . D 4 HOH A 75 440 93 HOH HOH . D 4 HOH A 76 441 94 HOH HOH . D 4 HOH A 77 442 96 HOH HOH . D 4 HOH A 78 443 97 HOH HOH . D 4 HOH A 79 444 98 HOH HOH . D 4 HOH A 80 445 99 HOH HOH . D 4 HOH A 81 446 100 HOH HOH . D 4 HOH A 82 447 101 HOH HOH . D 4 HOH A 83 448 102 HOH HOH . D 4 HOH A 84 449 104 HOH HOH . D 4 HOH A 85 450 105 HOH HOH . D 4 HOH A 86 451 106 HOH HOH . D 4 HOH A 87 452 107 HOH HOH . D 4 HOH A 88 453 108 HOH HOH . D 4 HOH A 89 454 110 HOH HOH . D 4 HOH A 90 455 111 HOH HOH . D 4 HOH A 91 456 112 HOH HOH . D 4 HOH A 92 457 113 HOH HOH . D 4 HOH A 93 458 114 HOH HOH . D 4 HOH A 94 459 115 HOH HOH . D 4 HOH A 95 460 117 HOH HOH . D 4 HOH A 96 461 118 HOH HOH . D 4 HOH A 97 462 119 HOH HOH . D 4 HOH A 98 463 120 HOH HOH . D 4 HOH A 99 464 121 HOH HOH . D 4 HOH A 100 465 122 HOH HOH . D 4 HOH A 101 466 123 HOH HOH . D 4 HOH A 102 467 124 HOH HOH . D 4 HOH A 103 468 125 HOH HOH . D 4 HOH A 104 469 126 HOH HOH . D 4 HOH A 105 470 128 HOH HOH . D 4 HOH A 106 471 129 HOH HOH . D 4 HOH A 107 472 130 HOH HOH . D 4 HOH A 108 473 132 HOH HOH . D 4 HOH A 109 474 133 HOH HOH . D 4 HOH A 110 475 134 HOH HOH . D 4 HOH A 111 476 136 HOH HOH . D 4 HOH A 112 477 137 HOH HOH . D 4 HOH A 113 478 138 HOH HOH . D 4 HOH A 114 479 139 HOH HOH . D 4 HOH A 115 480 141 HOH HOH . D 4 HOH A 116 481 142 HOH HOH . D 4 HOH A 117 482 143 HOH HOH . D 4 HOH A 118 483 145 HOH HOH . D 4 HOH A 119 484 146 HOH HOH . D 4 HOH A 120 485 147 HOH HOH . D 4 HOH A 121 486 148 HOH HOH . D 4 HOH A 122 487 149 HOH HOH . D 4 HOH A 123 488 150 HOH HOH . D 4 HOH A 124 489 152 HOH HOH . D 4 HOH A 125 490 153 HOH HOH . D 4 HOH A 126 491 154 HOH HOH . D 4 HOH A 127 492 155 HOH HOH . D 4 HOH A 128 493 156 HOH HOH . D 4 HOH A 129 494 157 HOH HOH . D 4 HOH A 130 495 158 HOH HOH . D 4 HOH A 131 496 159 HOH HOH . D 4 HOH A 132 497 160 HOH HOH . D 4 HOH A 133 498 163 HOH HOH . D 4 HOH A 134 499 164 HOH HOH . D 4 HOH A 135 500 165 HOH HOH . D 4 HOH A 136 501 167 HOH HOH . D 4 HOH A 137 502 168 HOH HOH . D 4 HOH A 138 503 169 HOH HOH . D 4 HOH A 139 504 170 HOH HOH . D 4 HOH A 140 505 171 HOH HOH . D 4 HOH A 141 506 172 HOH HOH . D 4 HOH A 142 507 174 HOH HOH . D 4 HOH A 143 508 175 HOH HOH . D 4 HOH A 144 509 176 HOH HOH . D 4 HOH A 145 510 177 HOH HOH . D 4 HOH A 146 511 178 HOH HOH . D 4 HOH A 147 512 179 HOH HOH . D 4 HOH A 148 513 180 HOH HOH . D 4 HOH A 149 514 181 HOH HOH . D 4 HOH A 150 515 182 HOH HOH . D 4 HOH A 151 516 183 HOH HOH . D 4 HOH A 152 517 186 HOH HOH . D 4 HOH A 153 518 187 HOH HOH . D 4 HOH A 154 519 188 HOH HOH . D 4 HOH A 155 520 189 HOH HOH . D 4 HOH A 156 521 190 HOH HOH . D 4 HOH A 157 522 191 HOH HOH . D 4 HOH A 158 523 192 HOH HOH . D 4 HOH A 159 524 193 HOH HOH . D 4 HOH A 160 525 197 HOH HOH . D 4 HOH A 161 526 198 HOH HOH . D 4 HOH A 162 527 199 HOH HOH . D 4 HOH A 163 528 205 HOH HOH . D 4 HOH A 164 529 206 HOH HOH . D 4 HOH A 165 530 207 HOH HOH . D 4 HOH A 166 531 209 HOH HOH . D 4 HOH A 167 532 210 HOH HOH . D 4 HOH A 168 533 212 HOH HOH . D 4 HOH A 169 534 214 HOH HOH . D 4 HOH A 170 535 216 HOH HOH . D 4 HOH A 171 536 218 HOH HOH . D 4 HOH A 172 537 222 HOH HOH . D 4 HOH A 173 538 223 HOH HOH . D 4 HOH A 174 539 224 HOH HOH . D 4 HOH A 175 540 226 HOH HOH . D 4 HOH A 176 541 227 HOH HOH . D 4 HOH A 177 542 228 HOH HOH . D 4 HOH A 178 543 230 HOH HOH . D 4 HOH A 179 544 231 HOH HOH . D 4 HOH A 180 545 235 HOH HOH . D 4 HOH A 181 546 238 HOH HOH . D 4 HOH A 182 547 242 HOH HOH . D 4 HOH A 183 548 243 HOH HOH . D 4 HOH A 184 549 245 HOH HOH . D 4 HOH A 185 550 248 HOH HOH . D 4 HOH A 186 551 249 HOH HOH . D 4 HOH A 187 552 251 HOH HOH . D 4 HOH A 188 553 252 HOH HOH . D 4 HOH A 189 554 254 HOH HOH . D 4 HOH A 190 555 255 HOH HOH . D 4 HOH A 191 556 256 HOH HOH . D 4 HOH A 192 557 258 HOH HOH . D 4 HOH A 193 558 259 HOH HOH . D 4 HOH A 194 559 261 HOH HOH . D 4 HOH A 195 560 264 HOH HOH . D 4 HOH A 196 561 265 HOH HOH . D 4 HOH A 197 562 267 HOH HOH . D 4 HOH A 198 563 271 HOH HOH . D 4 HOH A 199 564 273 HOH HOH . D 4 HOH A 200 565 278 HOH HOH . D 4 HOH A 201 566 279 HOH HOH . D 4 HOH A 202 567 280 HOH HOH . D 4 HOH A 203 568 281 HOH HOH . D 4 HOH A 204 569 282 HOH HOH . D 4 HOH A 205 570 286 HOH HOH . D 4 HOH A 206 571 288 HOH HOH . D 4 HOH A 207 572 292 HOH HOH . D 4 HOH A 208 573 293 HOH HOH . D 4 HOH A 209 574 294 HOH HOH . D 4 HOH A 210 575 295 HOH HOH . D 4 HOH A 211 576 298 HOH HOH . D 4 HOH A 212 577 299 HOH HOH . D 4 HOH A 213 578 300 HOH HOH . D 4 HOH A 214 579 301 HOH HOH . D 4 HOH A 215 580 302 HOH HOH . D 4 HOH A 216 581 303 HOH HOH . D 4 HOH A 217 582 304 HOH HOH . D 4 HOH A 218 583 305 HOH HOH . D 4 HOH A 219 584 306 HOH HOH . D 4 HOH A 220 585 307 HOH HOH . D 4 HOH A 221 586 308 HOH HOH . D 4 HOH A 222 587 309 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 29.423 11.722 12.578 1 36.41 ? C1 GOL 365 A 1 HETATM 2 O O1 GOL . . . C 3 29.092 12.666 13.572 1 36.1 ? O1 GOL 365 A 1 HETATM 3 C C2 GOL . . . C 3 28.176 10.994 12.08 1 37.8 ? C2 GOL 365 A 1 HETATM 4 O O2 GOL . . . C 3 27.496 11.765 11.104 1 37.67 ? O2 GOL 365 A 1 HETATM 5 C C3 GOL . . . C 3 27.249 10.669 13.244 1 37.35 ? C3 GOL 365 A 1 HETATM 6 O O3 GOL . . . C 3 26.005 10.246 12.73 1 37.46 ? O3 GOL 365 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #