data_3MZE # _model_server_result.job_id 3w2-XmlYdoSqFuPBbjFBSA _model_server_result.datetime_utc '2024-10-09 23:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":364}' # _entry.id 3MZE # _exptl.entry_id 3MZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.44 _cell.angle_gamma 90 _cell.entry_id 3MZE _cell.length_a 109.42 _cell.length_b 50.34 _cell.length_c 84.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 44 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C14 _struct_conn.ptnr2_label_comp_id 1QL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 1QL _struct_conn.ptnr2_auth_seq_id 364 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.365 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H19 N3 O7 S2' _chem_comp.formula_weight 429.468 _chem_comp.id 1QL _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Cefoxitin, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 S1 1QL sing 1 n n C9 C10 1QL sing 2 n n C11 C10 1QL sing 3 n n S1 C8 1QL sing 4 n n C10 C13 1QL doub 5 n n O4 C14 1QL doub 6 n n C8 N2 1QL sing 7 n n C8 C1 1QL sing 8 n n C14 C1 1QL sing 9 n n C13 N2 1QL sing 10 n n C13 C15 1QL sing 11 n n C1 O 1QL sing 12 n n C1 N 1QL sing 13 n n O C 1QL sing 14 n n C15 O5 1QL doub 15 n n C15 O6 1QL sing 16 n n N C2 1QL sing 17 n n O1 C2 1QL doub 18 n n C2 C3 1QL sing 19 n n C5 C4 1QL doub 20 n y C5 C6 1QL sing 21 n y C3 C4 1QL sing 22 n n C4 S 1QL sing 23 n y C6 C7 1QL doub 24 n y C7 S 1QL sing 25 n y C6 H1 1QL sing 26 n n O6 H2 1QL sing 27 n n C5 H3 1QL sing 28 n n C8 H4 1QL sing 29 n n C11 H5 1QL sing 30 n n C11 H6 1QL sing 31 n n C9 H7 1QL sing 32 n n C9 H8 1QL sing 33 n n C14 H9 1QL sing 34 n n C H10 1QL sing 35 n n C H11 1QL sing 36 n n C H12 1QL sing 37 n n N H13 1QL sing 38 n n C3 H14 1QL sing 39 n n C3 H15 1QL sing 40 n n C7 H16 1QL sing 41 n n C11 O2 1QL sing 42 n n O2 C16 1QL sing 43 n n N2 H17 1QL sing 44 n n C16 O3 1QL doub 45 n n C16 N1 1QL sing 46 n n N1 H24 1QL sing 47 n n N1 H25 1QL sing 48 n n # _atom_sites.entry_id 3MZE _atom_sites.fract_transf_matrix[1][1] 0.009139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005369 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1QL A 1 364 1 1QL CFX . C 3 GOL A 1 365 1 GOL GOL . D 3 GOL A 1 366 2 GOL GOL . E 3 GOL A 1 367 3 GOL GOL . F 3 GOL A 1 368 4 GOL GOL . G 4 HOH A 1 369 1 HOH HOH . G 4 HOH A 2 370 2 HOH HOH . G 4 HOH A 3 371 3 HOH HOH . G 4 HOH A 4 372 4 HOH HOH . G 4 HOH A 5 373 5 HOH HOH . G 4 HOH A 6 374 6 HOH HOH . G 4 HOH A 7 375 7 HOH HOH . G 4 HOH A 8 376 8 HOH HOH . G 4 HOH A 9 377 9 HOH HOH . G 4 HOH A 10 378 10 HOH HOH . G 4 HOH A 11 379 11 HOH HOH . G 4 HOH A 12 380 12 HOH HOH . G 4 HOH A 13 381 13 HOH HOH . G 4 HOH A 14 382 14 HOH HOH . G 4 HOH A 15 383 15 HOH HOH . G 4 HOH A 16 384 16 HOH HOH . G 4 HOH A 17 385 17 HOH HOH . G 4 HOH A 18 386 18 HOH HOH . G 4 HOH A 19 387 19 HOH HOH . G 4 HOH A 20 388 20 HOH HOH . G 4 HOH A 21 389 21 HOH HOH . G 4 HOH A 22 390 22 HOH HOH . G 4 HOH A 23 391 23 HOH HOH . G 4 HOH A 24 392 24 HOH HOH . G 4 HOH A 25 393 25 HOH HOH . G 4 HOH A 26 394 26 HOH HOH . G 4 HOH A 27 395 27 HOH HOH . G 4 HOH A 28 396 28 HOH HOH . G 4 HOH A 29 397 29 HOH HOH . G 4 HOH A 30 398 30 HOH HOH . G 4 HOH A 31 399 31 HOH HOH . G 4 HOH A 32 400 32 HOH HOH . G 4 HOH A 33 401 33 HOH HOH . G 4 HOH A 34 402 34 HOH HOH . G 4 HOH A 35 403 35 HOH HOH . G 4 HOH A 36 404 36 HOH HOH . G 4 HOH A 37 405 37 HOH HOH . G 4 HOH A 38 406 38 HOH HOH . G 4 HOH A 39 407 39 HOH HOH . G 4 HOH A 40 408 40 HOH HOH . G 4 HOH A 41 409 41 HOH HOH . G 4 HOH A 42 410 42 HOH HOH . G 4 HOH A 43 411 43 HOH HOH . G 4 HOH A 44 412 44 HOH HOH . G 4 HOH A 45 413 45 HOH HOH . G 4 HOH A 46 414 46 HOH HOH . G 4 HOH A 47 415 47 HOH HOH . G 4 HOH A 48 416 48 HOH HOH . G 4 HOH A 49 417 49 HOH HOH . G 4 HOH A 50 418 50 HOH HOH . G 4 HOH A 51 419 51 HOH HOH . G 4 HOH A 52 420 52 HOH HOH . G 4 HOH A 53 421 53 HOH HOH . G 4 HOH A 54 422 54 HOH HOH . G 4 HOH A 55 423 55 HOH HOH . G 4 HOH A 56 424 56 HOH HOH . G 4 HOH A 57 425 57 HOH HOH . G 4 HOH A 58 426 58 HOH HOH . G 4 HOH A 59 427 59 HOH HOH . G 4 HOH A 60 428 60 HOH HOH . G 4 HOH A 61 429 61 HOH HOH . G 4 HOH A 62 430 62 HOH HOH . G 4 HOH A 63 431 63 HOH HOH . G 4 HOH A 64 432 64 HOH HOH . G 4 HOH A 65 433 65 HOH HOH . G 4 HOH A 66 434 66 HOH HOH . G 4 HOH A 67 435 67 HOH HOH . G 4 HOH A 68 436 68 HOH HOH . G 4 HOH A 69 437 69 HOH HOH . G 4 HOH A 70 438 70 HOH HOH . G 4 HOH A 71 439 71 HOH HOH . G 4 HOH A 72 440 72 HOH HOH . G 4 HOH A 73 441 73 HOH HOH . G 4 HOH A 74 442 74 HOH HOH . G 4 HOH A 75 443 75 HOH HOH . G 4 HOH A 76 444 76 HOH HOH . G 4 HOH A 77 445 77 HOH HOH . G 4 HOH A 78 446 78 HOH HOH . G 4 HOH A 79 447 79 HOH HOH . G 4 HOH A 80 448 80 HOH HOH . G 4 HOH A 81 449 81 HOH HOH . G 4 HOH A 82 450 82 HOH HOH . G 4 HOH A 83 451 83 HOH HOH . G 4 HOH A 84 452 84 HOH HOH . G 4 HOH A 85 453 85 HOH HOH . G 4 HOH A 86 454 86 HOH HOH . G 4 HOH A 87 455 87 HOH HOH . G 4 HOH A 88 456 88 HOH HOH . G 4 HOH A 89 457 89 HOH HOH . G 4 HOH A 90 458 90 HOH HOH . G 4 HOH A 91 459 91 HOH HOH . G 4 HOH A 92 460 92 HOH HOH . G 4 HOH A 93 461 93 HOH HOH . G 4 HOH A 94 462 94 HOH HOH . G 4 HOH A 95 463 95 HOH HOH . G 4 HOH A 96 464 96 HOH HOH . G 4 HOH A 97 465 97 HOH HOH . G 4 HOH A 98 466 98 HOH HOH . G 4 HOH A 99 467 99 HOH HOH . G 4 HOH A 100 468 100 HOH HOH . G 4 HOH A 101 469 101 HOH HOH . G 4 HOH A 102 470 102 HOH HOH . G 4 HOH A 103 471 103 HOH HOH . G 4 HOH A 104 472 104 HOH HOH . G 4 HOH A 105 473 105 HOH HOH . G 4 HOH A 106 474 106 HOH HOH . G 4 HOH A 107 475 107 HOH HOH . G 4 HOH A 108 476 108 HOH HOH . G 4 HOH A 109 477 109 HOH HOH . G 4 HOH A 110 478 110 HOH HOH . G 4 HOH A 111 479 111 HOH HOH . G 4 HOH A 112 480 112 HOH HOH . G 4 HOH A 113 481 113 HOH HOH . G 4 HOH A 114 482 114 HOH HOH . G 4 HOH A 115 483 115 HOH HOH . G 4 HOH A 116 484 116 HOH HOH . G 4 HOH A 117 485 117 HOH HOH . G 4 HOH A 118 486 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1QL . . . B 2 40.506 7.763 32.165 0 51.48 ? C4 1QL 364 A 1 HETATM 2 C C2 1QL . . . B 2 40.317 7.411 29.652 1 46.72 ? C2 1QL 364 A 1 HETATM 3 N N2 1QL . . . B 2 44.431 5.978 28.124 1 44.24 ? N2 1QL 364 A 1 HETATM 4 C C6 1QL . . . B 2 41.94 8.183 33.866 0 52.23 ? C6 1QL 364 A 1 HETATM 5 O O6 1QL . . . B 2 44.253 2.713 28.842 1 43.13 ? O6 1QL 364 A 1 HETATM 6 C C5 1QL . . . B 2 41.495 7.305 32.943 0 52.14 ? C5 1QL 364 A 1 HETATM 7 C C8 1QL . . . B 2 44.025 7.344 28.602 1 42.94 ? C8 1QL 364 A 1 HETATM 8 C C15 1QL . . . B 2 44.975 3.585 28.307 1 44.64 ? C15 1QL 364 A 1 HETATM 9 O O5 1QL . . . B 2 45.893 3.327 27.5 1 42.5 ? O5 1QL 364 A 1 HETATM 10 C C13 1QL . . . B 2 44.984 5.016 28.883 1 44.77 ? C13 1QL 364 A 1 HETATM 11 C C10 1QL . . . B 2 45.595 5.221 30.123 1 46.26 ? C10 1QL 364 A 1 HETATM 12 C C11 1QL . . . B 2 46.199 4.001 30.841 0 47.47 ? C11 1QL 364 A 1 HETATM 13 C C9 1QL . . . B 2 45.738 6.551 30.855 1 45.14 ? C9 1QL 364 A 1 HETATM 14 S S1 1QL . . . B 2 44.554 7.831 30.304 1 45.14 ? S1 1QL 364 A 1 HETATM 15 C C14 1QL . . . B 2 42.092 6.772 27.11 1 37.03 ? C14 1QL 364 A 1 HETATM 16 O O4 1QL . . . B 2 41.461 5.716 27.173 1 37.07 ? O4 1QL 364 A 1 HETATM 17 C C1 1QL . . . B 2 42.491 7.61 28.36 1 41.2 ? C1 1QL 364 A 1 HETATM 18 O O 1QL . . . B 2 42.439 9.093 28.172 1 41.48 ? O 1QL 364 A 1 HETATM 19 C C 1QL . . . B 2 41.256 9.684 27.552 1 40.97 ? C 1QL 364 A 1 HETATM 20 N N 1QL . . . B 2 41.655 7.293 29.545 1 42.81 ? N 1QL 364 A 1 HETATM 21 O O1 1QL . . . B 2 39.532 7.767 28.765 1 45.95 ? O1 1QL 364 A 1 HETATM 22 C C3 1QL . . . B 2 39.763 7.032 31.032 0 49.74 ? C3 1QL 364 A 1 HETATM 23 S S 1QL . . . B 2 40.161 9.355 32.655 0 53.17 ? S 1QL 364 A 1 HETATM 24 C C7 1QL . . . B 2 41.329 9.381 33.877 0 51.72 ? C7 1QL 364 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #